int main(int argc, char *argv[])
{
if (argc != 3)
{
std::cout << std::endl
<< "Filter peptides is used to filter pep.xml files from blacklisted peptides after the search has been performed. For example shared peptides between two species or known containments."
<< std::endl;
std::cerr << "Usage: filterPeptides [file.pep.xml] [blacklist]" << std::endl;
exit(1);
}
//Load the blacklist in our hashmap for fast acces
std::unordered_set<std::string> blacklistSet(loadBlacklist(argv[2]));
std::cout << "Blacklist (" << argv[2] << ") contains " << blacklistSet.size() << " peptides" << std::endl;
std::string inFile(argv[1]);
std::string extension(".pep.xml");
std::string outFile(inFile.substr(0, inFile.length() - extension.length()));
outFile.append(".filtered.pep.xml");
std::ofstream outputStream(outFile, std::ofstream::out | std::ofstream::trunc);
pugi::xml_document doc;
pugi::xml_parse_result result = doc.load_file(argv[1]);
if (result)
{
pugi::xml_object_range<pugi::xml_named_node_iterator> spectrumQueries =
doc.child("msms_pipeline_analysis").child("msms_run_summary").children("spectrum_query");
std::cout << "pugixml: [" << argv[1] << "] parsed without errors, total spectrum queries: "
<< std::distance(spectrumQueries.begin(), spectrumQueries.end()) << "\n";
}
else
{
std::cout << "pugixml: [" << argv[1] << "] parsed with errors\n";
std::cout << "Error description: " << result.description() << "\n";
std::cout << "Error offset: " << result.offset;
exit(1);
}
unsigned totalDeleted = 0;
unsigned totalPeptides = 0;
//Containers to store our nodes we need to delete afterwards
std::vector<pugi::xml_node> spectrumToDelete;
std::vector<pugi::xml_node> searchhitToDelete;
//Initialize the searchhitNodes counter
unsigned searchhitNodes = 0;
for (pugi::xml_node spectrum : doc.child("msms_pipeline_analysis").child("msms_run_summary").children(
"spectrum_query"))
{
//Temp variable for easier acces
pugi::xml_object_range<pugi::xml_named_node_iterator> search_resultNodes =
spectrum.child("search_result").children("search_hit");
for (pugi::xml_node search_hit : search_resultNodes)
{
if (blacklistSet.find(search_hit.attribute("peptide").as_string()) != blacklistSet.end())
{
//notify the user of our node deletion
std::cout << "Deleting from spectrum '" << spectrum.attribute("spectrum").as_string();
std::cout << "' peptide hit '" << search_hit.attribute("peptide").as_string();
std::cout << "' (rank:" << search_hit.attribute("hit_rank").as_uint() << ")" << "\n";
searchhitToDelete.push_back(search_hit);
}
totalPeptides++;
}
if (searchhitToDelete.size() == 0)
{
//Short circuit and skip expensive deletion of nodes
continue;
}
//Count the total amount of nodes
searchhitNodes = std::distance(search_resultNodes.begin(), search_resultNodes.end());
totalDeleted+=searchhitToDelete.size();
if ((searchhitNodes - searchhitToDelete.size()) == 0)
{
//if the results are empty, delete the whole spectrum with it's query entries
spectrumToDelete.push_back(spectrum);
}
else
{
//Remove the required nodes
for (pugi::xml_node &search_hit : searchhitToDelete)
{
spectrum.child("search_result").remove_child(search_hit);
}
//TODO re-score the hit ranks of the other nodes
}
searchhitToDelete.clear();
}
//Clean up empty spectrum nodes
for (pugi::xml_node &spectrum : spectrumToDelete)
{
doc.child("msms_pipeline_analysis").child("msms_run_summary").remove_child(spectrum);
}
//Pritn final results to the user
std::cout << "Total peptides deleted: " << totalDeleted << " of " << totalPeptides << " peptide hits and removed "
<< spectrumToDelete.size() << " empty spectrum_query results." << std::endl;
std::cout << "Saving result: " << (doc.save_file(outFile.c_str(), "") ? outFile.c_str() : "failed") << std::endl
<< std::endl;
}
void BandwidthMeter::render(int screenWidth, int screenHeight) {
int x = BORDER_DISTANCE_HORIZ + (AREA_WIDTH >= 0 ? 0 : screenWidth + AREA_WIDTH);
int y = BORDER_DISTANCE_VERT + (AREA_HEIGHT >= 0 ? 0 : screenHeight + AREA_HEIGHT);
int w = glm::abs(AREA_WIDTH), h = glm::abs(AREA_HEIGHT);
// Determine total
float totalIn = 0.0f, totalOut = 0.0f;
for (size_t i = 0; i < N_CHANNELS; ++i) {
totalIn += inputStream(ChannelIndex(i)).getValue();
totalOut += outputStream(ChannelIndex(i)).getValue();
}
totalIn *= UNIT_SCALE;
totalOut *= UNIT_SCALE;
float totalMax = glm::max(totalIn, totalOut);
// Get font / caption metrics
QFontMetrics const& fontMetrics = _textRenderer->metrics();
int fontDescent = fontMetrics.descent();
int labelWidthIn = fontMetrics.width(CAPTION_IN);
int labelWidthOut = fontMetrics.width(CAPTION_OUT);
int labelWidthInOut = glm::max(labelWidthIn, labelWidthOut);
int labelHeight = fontMetrics.ascent() + fontDescent;
int labelWidthUnit = fontMetrics.width(CAPTION_UNIT);
int labelsWidth = labelWidthInOut + SPACING_RIGHT_CAPTION_IN_OUT + SPACING_LEFT_CAPTION_UNIT + labelWidthUnit;
// Calculate coordinates and dimensions
int barX = x + labelWidthInOut + SPACING_RIGHT_CAPTION_IN_OUT;
int barWidth = w - labelsWidth;
int barHeight = (h - SPACING_VERT_BARS) / 2;
int textYcenteredLine = h - centered(labelHeight, h) - fontDescent;
int textYupperLine = barHeight - centered(labelHeight, barHeight) - fontDescent;
int textYlowerLine = h - centered(labelHeight, barHeight) - fontDescent;
// Center of coordinate system -> upper left of bar
glPushMatrix();
glTranslatef((float)barX, (float)y, 0.0f);
// Render captions
glm::vec4 textColor = getColorRGBA(COLOR_TEXT);
_textRenderer->draw(barWidth + SPACING_LEFT_CAPTION_UNIT, textYcenteredLine, CAPTION_UNIT, textColor);
_textRenderer->draw(-labelWidthIn - SPACING_RIGHT_CAPTION_IN_OUT, textYupperLine, CAPTION_IN, textColor);
_textRenderer->draw(-labelWidthOut - SPACING_RIGHT_CAPTION_IN_OUT, textYlowerLine, CAPTION_OUT, textColor);
// Render vertical lines for the frame
// TODO: I think there may be a bug in this newest code and/or the GeometryCache code, because it seems like
// sometimes the bandwidth meter doesn't render the vertical lines
renderVerticalLine(0, 0, h, COLOR_FRAME);
renderVerticalLine(barWidth, 0, h, COLOR_FRAME);
// Adjust scale
int steps;
double step, scaleMax;
bool commit = false;
do {
steps = (_scaleMaxIndex % 9) + 2;
step = pow(10.0, (_scaleMaxIndex / 9) - 10);
scaleMax = step * steps;
if (commit) {
// printLog("Bandwidth meter scale: %d\n", _scaleMaxIndex);
break;
}
if (totalMax < scaleMax * 0.5) {
_scaleMaxIndex = glm::max(0, _scaleMaxIndex - 1);
commit = true;
} else if (totalMax > scaleMax) {
_scaleMaxIndex += 1;
commit = true;
}
} while (commit);
step = scaleMax / NUMBER_OF_MARKERS;
if (scaleMax < MIN_METER_SCALE) {
scaleMax = MIN_METER_SCALE;
}
// Render scale indicators
for (int j = NUMBER_OF_MARKERS; --j > 0;) {
renderVerticalLine((barWidth * j) / NUMBER_OF_MARKERS, 0, h, COLOR_INDICATOR);
}
// Render bars
int xIn = 0, xOut = 0;
for (size_t i = 0; i < N_CHANNELS; ++i) {
ChannelIndex chIdx = ChannelIndex(i);
int wIn = (int)(barWidth * inputStream(chIdx).getValue() * UNIT_SCALE / scaleMax);
int wOut = (int)(barWidth * outputStream(chIdx).getValue() * UNIT_SCALE / scaleMax);
if (wIn > 0) {
renderBox(xIn, 0, wIn, barHeight, channelInfo(chIdx).colorRGBA);
}
xIn += wIn;
if (wOut > 0) {
renderBox(xOut, h - barHeight, wOut, barHeight, channelInfo(chIdx).colorRGBA);
}
xOut += wOut;
}
// Render numbers
char fmtBuf[8];
sprintf(fmtBuf, "%0.1f", totalIn);
_textRenderer->draw(glm::max(xIn - fontMetrics.width(fmtBuf) - PADDING_HORIZ_VALUE,
PADDING_HORIZ_VALUE),
textYupperLine, fmtBuf, textColor);
sprintf(fmtBuf, "%0.1f", totalOut);
_textRenderer->draw(glm::max(xOut - fontMetrics.width(fmtBuf) - PADDING_HORIZ_VALUE,
PADDING_HORIZ_VALUE),
textYlowerLine, fmtBuf, textColor);
glPopMatrix();
// After rendering, indicate that no data has been sent/received since the last feed.
// This way, the meters fall when not continuously fed.
for (size_t i = 0; i < N_CHANNELS; ++i) {
inputStream(ChannelIndex(i)).updateValue(0);
outputStream(ChannelIndex(i)).updateValue(0);
}
}
synthclone::Sample *
SessionSampleData::updateSample(synthclone::Sample &sample, bool forceCopy,
QObject *parent)
{
if (! sampleDirectory) {
// The session is being unloaded.
return 0;
}
synthclone::SampleInputStream inputStream(sample);
ChannelConvertAlgorithm channelConvertAlgorithm;
synthclone::SampleChannelCount inputChannels = inputStream.getChannels();
if (sampleChannelCount == inputChannels) {
channelConvertAlgorithm = CHANNELCONVERTALGORITHM_NONE;
} else if (sampleChannelCount == 1) {
channelConvertAlgorithm = CHANNELCONVERTALGORITHM_TO_MONO;
} else if (inputChannels == 1) {
channelConvertAlgorithm = CHANNELCONVERTALGORITHM_FROM_MONO;
} else {
// How does one convert a multi-channel sample to a different channel
// count that isn't mono? I'm open to ideas.
return 0;
}
// If the sample rate isn't set, then set it to the sample rate of the new
// sample.
synthclone::SampleRate inputSampleRate = inputStream.getSampleRate();
if (sampleRate == synthclone::SAMPLE_RATE_NOT_SET) {
setSampleRate(inputSampleRate);
}
bool sampleConversionRequired = inputSampleRate != sampleRate;
QString newPath = createUniqueFile(sampleDirectory);
if ((channelConvertAlgorithm == CHANNELCONVERTALGORITHM_NONE) &&
(! sampleConversionRequired) && (! forceCopy)) {
if (sampleDirectory) {
if (QFileInfo(sample.getPath()).absolutePath() ==
sampleDirectory->absolutePath()) {
// Nothing needs to be done.
return &sample;
}
}
}
// At this point, either some sort of conversion is required, the sample is
// being moved from outside the sample directory into the sample directory,
// or a forced copy was requested.
float *channelBuffer;
// For some reason, the empty QScopedArrayPointer constructor is not
// available on the Mac OSX platform.
QScopedArrayPointer<float> channelBufferPtr(static_cast<float *>(0));
float *convertBuffer = new float[sampleChannelCount * 512];
QScopedArrayPointer<float> convertBufferPtr(convertBuffer);
SampleRateConverter *converter;
QScopedPointer<SampleRateConverter> converterPtr;
float *inputBuffer = new float[inputChannels * 512];
QScopedArrayPointer<float> inputBufferPtr(inputBuffer);
if (! sampleConversionRequired) {
channelBuffer = convertBuffer;
converter = 0;
} else {
if (channelConvertAlgorithm != CHANNELCONVERTALGORITHM_NONE) {
channelBuffer = new float[sampleChannelCount];
channelBufferPtr.reset(channelBuffer);
} else {
channelBuffer = inputBuffer;
}
double ratio = static_cast<double>(sampleRate) / inputSampleRate;
converter = new SampleRateConverter(sampleChannelCount, ratio, this);
converterPtr.reset(converter);
}
// Create the new sample object.
synthclone::Sample *outputSample = new synthclone::Sample(newPath, parent);
QScopedPointer<synthclone::Sample> outputSamplePtr(outputSample);
synthclone::SampleOutputStream
outputStream(*outputSample, sampleRate, sampleChannelCount);
// Convert.
synthclone::SampleFrameCount framesRead;
long outputFramesUsed;
do {
// Get data from input stream.
framesRead = inputStream.read(inputBuffer, 512);
// Channel conversion.
switch (channelConvertAlgorithm) {
case CHANNELCONVERTALGORITHM_TO_MONO:
for (int i = 0; i < framesRead; i++) {
float n = 0.0;
for (int j = 0; j < inputChannels; j++) {
n += inputBuffer[(i * inputChannels) + j];
}
channelBuffer[i] = n / inputChannels;
}
break;
case CHANNELCONVERTALGORITHM_FROM_MONO:
for (int i = 0; i < framesRead; i++) {
float n = inputBuffer[i];
for (int j = 0; j < sampleChannelCount; j++) {
channelBuffer[(i * sampleChannelCount) + j] = n;
}
}
break;
case 0:
// There's no channel conversion. Above, we assign the
// 'channelBuffer' to 'inputBuffer' when there's no channel
// conversion. So, the data is already in 'channelBuffer'.
;
}
// Sample rate conversion.
if (sampleConversionRequired) {
long inputFramesUsed =
converter->convert(channelBuffer, static_cast<long>(framesRead),
convertBuffer, 512, outputFramesUsed,
! framesRead);
if (inputFramesUsed != framesRead) {
inputStream.seek(inputFramesUsed - framesRead,
synthclone::SampleStream::OFFSET_CURRENT);
}
} else {
// If sample rate conversion isn't required, then the data to write
// is already in 'convertBuffer', as 'convertBuffer' and
// 'channelBuffer' point to the same memory area.
outputFramesUsed = framesRead;
}
// Write data to output stream.
if (outputFramesUsed) {
outputStream.write(convertBuffer,
static_cast<synthclone::SampleFrameCount>
(outputFramesUsed));
}
} while (framesRead);
// Finish up sample rate conversion.
if (sampleConversionRequired && outputFramesUsed) {
for (;;) {
converter->convert(channelBuffer, 0, convertBuffer, 512,
outputFramesUsed, true);
if (! outputFramesUsed) {
break;
}
outputStream.write(convertBuffer,
static_cast<synthclone::SampleFrameCount>
(outputFramesUsed));
}
}
// Cleanup.
outputStream.close();
return outputSamplePtr.take();
}
void LogsDialog::exportToGoogleEarth()
{
// filter data points
QList<QStringList> dataPoints = filterGePoints(csvlog);
int n = dataPoints.count(); // number of points to export
if (n==0) return;
int latcol=0, longcol=0, altcol=0, speedcol=0;
QSet<int> nondataCols;
for (int i=1; i<dataPoints.at(0).count(); i++) {
// Long,Lat,Course,GPS Speed,GPS Alt
if (dataPoints.at(0).at(i).contains("Long")) {
longcol = i;
nondataCols << i;
}
if (dataPoints.at(0).at(i).contains("Lat")) {
latcol = i;
nondataCols << i;
}
if (dataPoints.at(0).at(i).contains("GPS Alt") || dataPoints.at(0).at(i).contains("GAlt")) {
altcol = i;
nondataCols << i;
}
if (dataPoints.at(0).at(i).contains("GPS Speed")) {
speedcol = i;
nondataCols << i;
}
}
if (longcol==0 || latcol==0) {
return;
}
QString geIconFilename = generateProcessUniqueTempFileName("track0.png");
if (QFile::exists(geIconFilename)) {
QFile::remove(geIconFilename);
}
QFile::copy(":/images/track0.png", geIconFilename);
QString geFilename = generateProcessUniqueTempFileName("flight.kml");
if (QFile::exists(geFilename)) {
QFile::remove(geFilename);
}
QFile geFile(geFilename);
if (!geFile.open(QIODevice::WriteOnly | QIODevice::Text)) {
QMessageBox::warning(this, tr("Error"),
tr("Cannot write file %1:\n%2.")
.arg(geFilename)
.arg(geFile.errorString()));
return;
}
QTextStream outputStream(&geFile);
// file header
outputStream << "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n<kml xmlns=\"http://www.opengis.net/kml/2.2\" xmlns:gx=\"http://www.google.com/kml/ext/2.2\">\n";
outputStream << "\t<Document>\n\t\t<name>" << logFilename << "</name>\n";
outputStream << "\t\t<Style id=\"multiTrack_n\">\n\t\t\t<IconStyle>\n\t\t\t\t<Icon>\n\t\t\t\t\t<href>file://" << geIconFilename << "</href>\n\t\t\t\t</Icon>\n\t\t\t</IconStyle>\n\t\t\t<LineStyle>\n\t\t\t\t<color>991081f4</color>\n\t\t\t\t<width>6</width>\n\t\t\t</LineStyle>\n\t\t</Style>\n";
outputStream << "\t\t<Style id=\"multiTrack_h\">\n\t\t\t<IconStyle>\n\t\t\t\t<scale>0</scale>\n\t\t\t\t<Icon>\n\t\t\t\t\t<href>file://" << geIconFilename << "</href>\n\t\t\t\t</Icon>\n\t\t\t</IconStyle>\n\t\t\t<LineStyle>\n\t\t\t\t<color>991081f4</color>\n\t\t\t\t<width>8</width>\n\t\t\t</LineStyle>\n\t\t</Style>\n";
outputStream << "\t\t<StyleMap id=\"multiTrack\">\n\t\t\t<Pair>\n\t\t\t\t<key>normal</key>\n\t\t\t\t<styleUrl>#multiTrack_n</styleUrl>\n\t\t\t</Pair>\n\t\t\t<Pair>\n\t\t\t\t<key>highlight</key>\n\t\t\t\t<styleUrl>#multiTrack_h</styleUrl>\n\t\t\t</Pair>\n\t\t</StyleMap>\n";
outputStream << "\t\t<Style id=\"lineStyle\">\n\t\t\t<LineStyle>\n\t\t\t\t<color>991081f4</color>\n\t\t\t\t<width>6</width>\n\t\t\t</LineStyle>\n\t\t</Style>\n";
outputStream << "\t\t<Schema id=\"schema\">\n";
outputStream << "\t\t\t<gx:SimpleArrayField name=\"GPSSpeed\" type=\"float\">\n\t\t\t\t<displayName>GPS Speed</displayName>\n\t\t\t</gx:SimpleArrayField>\n";
// declare additional fields
for (int i=0; i<dataPoints.at(0).count()-2; i++) {
if (ui->FieldsTW->item(0,i)->isSelected() && !nondataCols.contains(i+2)) {
QString origName = dataPoints.at(0).at(i+2);
QString safeName = origName;
safeName.replace(" ","_");
outputStream << "\t\t\t<gx:SimpleArrayField name=\""<< safeName <<"\" ";
outputStream << "type=\"string\""; // additional fields have fixed type: string
outputStream << ">\n\t\t\t\t<displayName>" << origName << "</displayName>\n\t\t\t</gx:SimpleArrayField>\n";
}
}
QString planeName;
if (logFilename.indexOf("-")>0) {
planeName=logFilename.left(logFilename.indexOf("-"));
} else {
planeName=logFilename;
}
outputStream << "\t\t</Schema>\n";
outputStream << "\t\t<Folder>\n\t\t\t<name>Log Data</name>\n\t\t\t<Placemark>\n\t\t\t\t<name>" << planeName << "</name>";
outputStream << "\n\t\t\t\t<styleUrl>#multiTrack</styleUrl>";
outputStream << "\n\t\t\t\t<gx:Track>\n";
outputStream << "\n\t\t\t\t\t<altitudeMode>absolute</altitudeMode>\n";
// time data points
for (int i=1; i<n; i++) {
QString tstamp=dataPoints.at(i).at(0)+QString("T")+dataPoints.at(i).at(1)+QString("Z");
outputStream << "\t\t\t\t\t<when>"<< tstamp <<"</when>\n";
}
// coordinate data points
for (int i=1; i<n; i++) {
QString latitude = dataPoints.at(i).at(latcol).trimmed();
QString longitude = dataPoints.at(i).at(longcol).trimmed();
int altitude = altcol ? dataPoints.at(i).at(altcol).toFloat() : 0;
latitude.sprintf("%3.8f", toDecimalCoordinate(latitude));
longitude.sprintf("%3.8f", toDecimalCoordinate(longitude));
outputStream << "\t\t\t\t\t<gx:coord>" << longitude << " " << latitude << " " << altitude << " </gx:coord>\n" ;
}
// additional data for data points
outputStream << "\t\t\t\t\t<ExtendedData>\n\t\t\t\t\t\t<SchemaData schemaUrl=\"#schema\">\n";
if (speedcol) {
// gps speed data points
outputStream << "\t\t\t\t\t\t\t<gx:SimpleArrayData name=\"GPSSpeed\">\n";
for (int i=1; i<n; i++) {
outputStream << "\t\t\t\t\t\t\t\t<gx:value>"<< dataPoints.at(i).at(speedcol) <<"</gx:value>\n";
}
outputStream << "\t\t\t\t\t\t\t</gx:SimpleArrayData>\n";
}
// add values for additional fields
for (int i=0; i<dataPoints.at(0).count()-2; i++) {
if (ui->FieldsTW->item(0,i)->isSelected() && !nondataCols.contains(i+2)) {
QString safeName = dataPoints.at(0).at(i+2);;
safeName.replace(" ","_");
outputStream << "\t\t\t\t\t\t\t<gx:SimpleArrayData name=\""<< safeName <<"\">\n";
for (int j=1; j<n; j++) {
outputStream << "\t\t\t\t\t\t\t\t<gx:value>"<< dataPoints.at(j).at(i+2) <<"</gx:value>\n";
}
outputStream << "\t\t\t\t\t\t\t</gx:SimpleArrayData>\n";
}
}
outputStream << "\t\t\t\t\t\t</SchemaData>\n\t\t\t\t\t</ExtendedData>\n\t\t\t\t</gx:Track>\n\t\t\t</Placemark>\n\t\t</Folder>\n\t</Document>\n</kml>";
geFile.close();
QString gePath = g.gePath();
QStringList parameters;
#ifdef __APPLE__
parameters << "-a";
parameters << gePath;
gePath = "/usr/bin/open";
#endif
parameters << geFilename;
QProcess *process = new QProcess(this);
process->start(gePath, parameters);
}
bool MdiChild::saveFile(const QString &fileName, bool setCurrent)
{
QString myFile;
myFile = fileName;
if (IS_SKY9X(GetEepromInterface()->getBoard())) {
myFile.replace(".eepe", ".bin");
}
QFile file(myFile);
int fileType = getFileType(myFile);
uint8_t *eeprom = (uint8_t*)malloc(GetEepromInterface()->getEEpromSize());
int eeprom_size = 0;
if (fileType != FILE_TYPE_XML) {
eeprom_size = GetEepromInterface()->save(eeprom, radioData, GetCurrentFirmware()->getVariantNumber(), 0/*last version*/);
if (!eeprom_size) {
QMessageBox::warning(this, tr("Error"),tr("Cannot write file %1:\n%2.").arg(myFile).arg(file.errorString()));
return false;
}
}
if (!file.open(fileType == FILE_TYPE_BIN ? QIODevice::WriteOnly : (QIODevice::WriteOnly | QIODevice::Text))) {
QMessageBox::warning(this, tr("Error"),tr("Cannot write file %1:\n%2.").arg(myFile).arg(file.errorString()));
return false;
}
QTextStream outputStream(&file);
#if 0
if (fileType==FILE_TYPE_XML) {
if (!XmlInterface(outputStream).save(radioData)) {
QMessageBox::warning(this, tr("Error"),tr("Cannot write file %1:\n%2.").arg(myFile).arg(file.errorString()));
file.close();
return false;
}
}
else
#endif
if (fileType==FILE_TYPE_HEX || fileType==FILE_TYPE_EEPE) { // write hex
if (fileType==FILE_TYPE_EEPE)
outputStream << EEPE_EEPROM_FILE_HEADER << "\n";
if (!HexInterface(outputStream).save(eeprom, eeprom_size)) {
QMessageBox::warning(this, tr("Error"),tr("Cannot write file %1:\n%2.").arg(myFile).arg(file.errorString()));
file.close();
return false;
}
}
else if (fileType==FILE_TYPE_BIN) // write binary
{
long result = file.write((char*)eeprom, eeprom_size);
if(result!=eeprom_size) {
QMessageBox::warning(this, tr("Error"),tr("Error writing file %1:\n%2.").arg(myFile).arg(file.errorString()));
return false;
}
}
else {
QMessageBox::warning(this, tr("Error"),tr("Error writing file %1:\n%2.").arg(myFile).arg("Unknown format"));
return false;
}
free(eeprom); // TODO free in all cases ...
file.close();
if(setCurrent) setCurrentFile(myFile);
return true;
}
void QgsSingleBandPseudoColorRendererWidget::on_mExportToFileButton_clicked()
{
QSettings settings;
QString lastDir = settings.value( "lastRasterFileFilterDir", "" ).toString();
QString fileName = QFileDialog::getSaveFileName( this, tr( "Save file" ), lastDir, tr( "Textfile (*.txt)" ) );
if ( !fileName.isEmpty() )
{
if ( !fileName.endsWith( ".txt", Qt::CaseInsensitive ) )
{
fileName = fileName + ".txt";
}
QFile outputFile( fileName );
if ( outputFile.open( QFile::WriteOnly ) )
{
QTextStream outputStream( &outputFile );
outputStream << "# " << tr( "QGIS Generated Color Map Export File" ) << "\n";
outputStream << "INTERPOLATION:";
if ( mColorInterpolationComboBox->currentText() == tr( "Linear" ) )
{
outputStream << "INTERPOLATED\n";
}
else if ( mColorInterpolationComboBox->currentText() == tr( "Discrete" ) )
{
outputStream << "DISCRETE\n";
}
else
{
outputStream << "EXACT\n";
}
int topLevelItemCount = mColormapTreeWidget->topLevelItemCount();
QTreeWidgetItem* currentItem;
QColor color;
for ( int i = 0; i < topLevelItemCount; ++i )
{
currentItem = mColormapTreeWidget->topLevelItem( i );
if ( !currentItem )
{
continue;
}
color = currentItem->background( 1 ).color();
outputStream << currentItem->text( 0 ).toDouble() << ",";
outputStream << color.red() << "," << color.green() << "," << color.blue() << "," << color.alpha() << ",";
if ( currentItem->text( 2 ) == "" )
{
outputStream << "Color entry " << i + 1 << "\n";
}
else
{
outputStream << currentItem->text( 2 ) << "\n";
}
}
outputStream.flush();
outputFile.close();
}
else
{
QMessageBox::warning( this, tr( "Write access denied" ), tr( "Write access denied. Adjust the file permissions and try again.\n\n" ) );
}
}
}
void CoreService::ProcessRequests (int inputFD, int outputFD)
{
try
{
Core = CoreDirect;
shared_ptr <Stream> inputStream (new FileStream (inputFD != -1 ? inputFD : InputPipe->GetReadFD()));
shared_ptr <Stream> outputStream (new FileStream (outputFD != -1 ? outputFD : OutputPipe->GetWriteFD()));
while (true)
{
shared_ptr <CoreServiceRequest> request = Serializable::DeserializeNew <CoreServiceRequest> (inputStream);
try
{
// ExitRequest
if (dynamic_cast <ExitRequest*> (request.get()) != nullptr)
{
if (ElevatedServiceAvailable)
request->Serialize (ServiceInputStream);
return;
}
if (!ElevatedPrivileges && request->ElevateUserPrivileges)
{
if (!ElevatedServiceAvailable)
{
finally_do_arg (string *, &request->AdminPassword, { StringConverter::Erase (*finally_arg); });
CoreService::StartElevated (*request);
ElevatedServiceAvailable = true;
}
request->Serialize (ServiceInputStream);
GetResponse <Serializable>()->Serialize (outputStream);
continue;
}
// CheckFilesystemRequest
CheckFilesystemRequest *checkRequest = dynamic_cast <CheckFilesystemRequest*> (request.get());
if (checkRequest)
{
Core->CheckFilesystem (checkRequest->MountedVolumeInfo, checkRequest->Repair);
CheckFilesystemResponse().Serialize (outputStream);
continue;
}
// DismountFilesystemRequest
DismountFilesystemRequest *dismountFsRequest = dynamic_cast <DismountFilesystemRequest*> (request.get());
if (dismountFsRequest)
{
Core->DismountFilesystem (dismountFsRequest->MountPoint, dismountFsRequest->Force);
DismountFilesystemResponse().Serialize (outputStream);
continue;
}
// DismountVolumeRequest
DismountVolumeRequest *dismountRequest = dynamic_cast <DismountVolumeRequest*> (request.get());
if (dismountRequest)
{
DismountVolumeResponse response;
response.DismountedVolumeInfo = Core->DismountVolume (dismountRequest->MountedVolumeInfo, dismountRequest->IgnoreOpenFiles, dismountRequest->SyncVolumeInfo);
response.Serialize (outputStream);
continue;
}
// GetDeviceSectorSizeRequest
GetDeviceSectorSizeRequest *getDeviceSectorSizeRequest = dynamic_cast <GetDeviceSectorSizeRequest*> (request.get());
if (getDeviceSectorSizeRequest)
{
GetDeviceSectorSizeResponse response;
response.Size = Core->GetDeviceSectorSize (getDeviceSectorSizeRequest->Path);
response.Serialize (outputStream);
continue;
}
// GetDeviceSizeRequest
GetDeviceSizeRequest *getDeviceSizeRequest = dynamic_cast <GetDeviceSizeRequest*> (request.get());
if (getDeviceSizeRequest)
{
GetDeviceSizeResponse response;
response.Size = Core->GetDeviceSize (getDeviceSizeRequest->Path);
response.Serialize (outputStream);
continue;
}
// GetHostDevicesRequest
GetHostDevicesRequest *getHostDevicesRequest = dynamic_cast <GetHostDevicesRequest*> (request.get());
if (getHostDevicesRequest)
{
GetHostDevicesResponse response;
response.HostDevices = Core->GetHostDevices (getHostDevicesRequest->PathListOnly);
response.Serialize (outputStream);
continue;
}
// MountVolumeRequest
MountVolumeRequest *mountRequest = dynamic_cast <MountVolumeRequest*> (request.get());
if (mountRequest)
{
MountVolumeResponse (
Core->MountVolume (*mountRequest->Options)
).Serialize (outputStream);
continue;
}
// SetFileOwnerRequest
SetFileOwnerRequest *setFileOwnerRequest = dynamic_cast <SetFileOwnerRequest*> (request.get());
if (setFileOwnerRequest)
{
CoreUnix *coreUnix = dynamic_cast <CoreUnix *> (Core.get());
if (!coreUnix)
throw ParameterIncorrect (SRC_POS);
coreUnix->SetFileOwner (setFileOwnerRequest->Path, setFileOwnerRequest->Owner);
SetFileOwnerResponse().Serialize (outputStream);
continue;
}
throw ParameterIncorrect (SRC_POS);
}
/**
* Slot called when the pbtnRunQuery button is pressed
*/
void eVisDatabaseConnectionGui::on_pbtnRunQuery_clicked( )
{
//Check to see if we have a query
if ( !teditSqlStatement->toPlainText( ).isEmpty( ) )
{
//Verify that we have an active database connection
if ( 0 != mDatabaseConnection )
{
//Execute query
QSqlQuery* myResults = mDatabaseConnection->query( teditSqlStatement->toPlainText( ) );
if ( 0 == myResults )
{
teditConsole->append( tr( "Error: Query failed: %1" ).arg( mDatabaseConnection->lastError( ) ) );
}
else if ( myResults->isSelect( ) )
{
//if valid and a select query, save results into temporary file and load as layer
myResults->next( );
if ( myResults->isValid( ) )
{
mTempOutputFileList->append( new QTemporaryFile( ) );
if ( mTempOutputFileList->last( )->open( ) )
{
QTextStream outputStream( mTempOutputFileList->last( ) );
QStringList fieldList;
/*
* Output column names
*/
for ( int x = 0; x < myResults->record( ).count( ); x++ )
{
if ( 0 == x )
{
outputStream << myResults->record( ).fieldName( x );
}
else
{
outputStream << "\t" << myResults->record( ).fieldName( x );
}
fieldList << myResults->record( ).fieldName( x );
}
outputStream << endl;
/*
* Output Data
*/
while ( myResults->isValid( ) )
{
for ( int x = 0; x < myResults->record( ).count( ); x++ )
{
if ( x == 0 )
{
outputStream << myResults->value( x ).toString( );
}
else
{
outputStream << "\t" << myResults->value( x ).toString( );
}
}
outputStream << endl;
myResults->next( );
}
mTempOutputFileList->last( )->close( );
mDatabaseLayerFieldSelector->setFieldList( &fieldList );
mDatabaseLayerFieldSelector->show( );
}
else
{
teditConsole->append( tr( "Error: Could not create temporary file, process halted" ) );
}
}
}
}
else
{
teditConsole->append( tr( "Error: A database connection is not currently established" ) );
}
}
}