C++ (Cpp) qes_seqfile_guess_format 예제들

예제 #1

파일: test_seqfile.c 프로젝트: kdmurray91/axe

static void
test_qes_seqfile_guess_format (void *ptr)
{
    struct qes_seqfile *sf = NULL;
    int res = -1;
    char *fname = NULL;

    (void) ptr;
    /* Test file opening for reading */
    fname = find_data_file("test.fastq");
    tt_assert(fname != NULL);
    sf = qes_seqfile_create(fname, "r");
    /* test with a FASTQ file */
    res = qes_seqfile_guess_format(sf);
    tt_int_op(res, ==, FASTQ_FMT);
    tt_int_op(sf->format, ==, FASTQ_FMT);
    qes_seqfile_destroy(sf);
    free(fname);
    /* test with a FASTA file */
    fname = find_data_file("test.fasta");
    tt_assert(fname != NULL);
    sf = qes_seqfile_create(fname, "r");
    res = qes_seqfile_guess_format(sf);
    tt_int_op(res, ==, FASTA_FMT);
    tt_int_op(sf->format, ==, FASTA_FMT);
    qes_seqfile_destroy(sf);
    free(fname);
    fname = NULL;
#ifdef ZLIB_FOUND
    /* test with a gziped FASTQ file */
    fname = find_data_file("test.fastq.gz");
    tt_assert(fname != NULL);
    sf = qes_seqfile_create(fname, "r");
    res = qes_seqfile_guess_format(sf);
    tt_int_op(res, ==, FASTQ_FMT);
    tt_int_op(sf->format, ==, FASTQ_FMT);
    qes_seqfile_destroy(sf);
#endif
end:
    qes_seqfile_destroy(sf);
    if (fname != NULL) free(fname);
}

예제 #2

파일: qes_seqfile.c 프로젝트: sylvainforet/libqes

struct qes_seqfile *
qes_seqfile_create (const char *path, const char *mode)
{
    struct qes_seqfile *sf = NULL;
    if (path == NULL || mode == NULL) return NULL;
    sf = qes_calloc(1, sizeof(*sf));
    sf->qf = qes_file_open(path, mode);
    if (sf->qf == NULL) {
        qes_free(sf->qf);
        qes_free(sf);
        return NULL;
    }
    qes_str_init(&sf->scratch, __INIT_LINE_LEN);
    sf->n_records = 0;
    qes_seqfile_guess_format(sf);
    return sf;
}