Istream& IPstream::read(word& w)
{
size_t ws;
readFromBuffer(ws);
w = &buf_[bufPosition_];
bufPosition_ += ws + 1;
checkEof();
return *this;
}
Foam::Istream& Foam::IPstream::read(word& str)
{
size_t len;
readFromBuffer(len);
str = &buf_[bufPosition_];
bufPosition_ += len + 1;
checkEof();
return *this;
}
Foam::Istream& Foam::UIPstream::read(string& str)
{
size_t len;
readFromBuffer(len);
str = &externalBuf_[externalBufPosition_];
externalBufPosition_ += len + 1;
checkEof();
return *this;
}
Istream& IPstream::read(string& s)
{
size_t ss;
readFromBuffer(ss);
s = &buf_[bufPosition_];
bufPosition_ += ss + 1;
checkEof();
return *this;
}
Foam::Istream& Foam::UIPstream::read(char* data, std::streamsize count)
{
if (format() != BINARY)
{
FatalErrorIn("UIPstream::read(char*, std::streamsize)")
<< "stream format not binary"
<< Foam::abort(FatalError);
}
readFromBuffer(data, count, 8);
return *this;
}
void cluster_t::update_map_distance_gpu(){
#ifdef USE_GPU
int x_dim = BLOCK_WIDTH * variable_blocks;
runKernel("update_map_distance",kernel_update_map_distance,x_dim,1,1,BLOCK_WIDTH,1,1);
float norm1_arr[variable_blocks];
float norm2_arr[variable_blocks];
readFromBuffer(buffer_variable_block_norms1,variable_blocks,norm1_arr,"buffer_variable_block_norms1");
readFromBuffer(buffer_variable_block_norms2,variable_blocks,norm2_arr,"buffer_variable_block_norms2");
float norm1=0,norm2=0;
for(int i=0;i<variable_blocks;++i){
//cerr<<"GPU Block "<<i<<" norm: "<<norm1_arr[i]<<","<<norm2_arr[i]<<endl;
norm1+=norm1_arr[i];
norm2+=norm2_arr[i];
}
if(config->verbose) cerr<<"GPU Norm1 was "<<norm1<<" and norm2 was "<<norm2<<endl;
float norm = norm1+norm2;
this->map_distance = norm;
this->dist_func = sqrt(this->map_distance+epsilon);
if(config->verbose)cerr<<"GET_MAP_DISTANCE: New map distance is "<<norm<<" with U distance="<<norm1<<", V distance="<<norm2<<" dist_func: "<<dist_func<<endl;
#endif
}
void cluster_t::finalize_iteration_gpu(){
#ifdef USE_GPU
int x_dim = BLOCK_WIDTH * n;
runKernel("get_U_norm_diff",kernel_get_U_norm_diff,x_dim,1,1,BLOCK_WIDTH,1,1);
readFromBuffer(buffer_n_norms,n,norm1_arr,"buffer_n_norms");
float gpu_U_norm_diff = 0;
for(int i=0;i<n;++i){
gpu_U_norm_diff+=norm1_arr[i];
}
U_norm_diff = sqrt(gpu_U_norm_diff);
if(config->verbose)cerr<<"FINALIZE_ITERATION: GPU U_norm_diff: "<<U_norm_diff<<endl;
#endif
}
extern Chain* chainCreateFromBuffer(char* fileBuffer, SWPrefs* swPrefs) {
Chain* chain = (Chain*) malloc(sizeof(struct Chain));
chain->subchain = 0;
readFromBuffer(chain, fileBuffer, swPrefsGetMatcher(swPrefs));
if (swPrefsSolveOnly(swPrefs)) {
chain->reverseCodes = NULL;
chain->reverseItems = NULL;
} else {
addReversedChain(chain);
}
return chain;
}
void cluster_t::store_U_projection_gpu(){
#ifdef USE_GPU
int x_dim = BLOCK_WIDTH * variable_blocks;
runKernel("store_U_project",kernel_store_U_project,x_dim,n,1,BLOCK_WIDTH,1,1);
bool debug_gpu = false;
if(debug_gpu){
float testArr[n*p];
readFromBuffer(buffer_U_project,n*p,testArr,"buffer_U_project");
for(int i=0;i<n;++i){
for(int j=0;j<p;++j){
if(i>(n-3) && j>(p-3)){
cerr<<"GPU store U_project for subject,var: "<<i<<","<<j<<": "<<testArr[i*p+j]<<endl;
}
}
}
}
#endif
}
void cluster_t::initialize_gpu(){
#ifdef USE_GPU
int x_dim = BLOCK_WIDTH * variable_blocks;
runKernel("init_U",kernel_init_U,x_dim,n,1,BLOCK_WIDTH,1,1);
bool debug_gpu = false;
if(debug_gpu){
float testArr[n*p];
readFromBuffer(buffer_U_project,n*p,testArr,"buffer_U_project");
for(int i=0;i<n;++i){
for(int j=0;j<p;++j){
if(i==(n-10) && j>(p-10)){
cerr<<"GPU: U_project_orig "<<i<<","<<j<<": "<<testArr[i*p+j]<<endl;
}
}
}
}
#endif
}
void cluster_t::init_v_project_coeff_gpu(){
#ifdef USE_GPU
float unweighted_lambda = mu * dist_func / rho;
writeToBuffer(buffer_unweighted_lambda, 1, &unweighted_lambda, "buffer_unweighted_lambda");
runKernel("init_v_project_coeff",kernel_init_v_project_coeff,BLOCK_WIDTH*n,n,1,BLOCK_WIDTH,1,1);
bool debug_gpu = false;
if(debug_gpu){
float * testv = new float[triangle_dim];
readFromBuffer(buffer_V_project_coeff,triangle_dim,testv,"buffer_V_project_coeff");
for(int index1=0;index1<n-1;++index1){
for(int index2=index1+1;index2<n;++index2){
float & scaler = testv[offsets[index1]+(index2-index1)];
if (scaler !=0 && scaler !=1 )
cerr<<"GPU Init_V Index: "<<index1<<","<<index2<<": "<<scaler<<endl;
}
}
}
#endif
}
void cluster_t::update_u_gpu(){
#ifdef USE_GPU
writeToBuffer(buffer_dist_func,1,&dist_func,"buffer_dist_func");
writeToBuffer(buffer_rho,1,&rho,"buffer_rho");
int x_dim = BLOCK_WIDTH * variable_blocks;
runKernel("update_U",kernel_update_U,x_dim,n,1,BLOCK_WIDTH,1,1);
bool debug_gpu = false;
if(debug_gpu){
float testArr[n*p];
readFromBuffer(buffer_U,n*p,testArr,"buffer_U");
for(int i=0;i<n;++i){
for(int j=0;j<p;++j){
if(i==(n-10) && j>(p-10)){
cerr<<"update U GPU: U: "<<i<<","<<j<<": "<<testArr[i*p+j]<<endl;
}
}
}
}
#endif
}
bool ZLXMLReader::readDocument(shared_ptr<ZLInputStream> stream) {
if (stream.isNull() || !stream->open()) {
return false;
}
bool useWindows1252 = false;
stream->read(myParserBuffer, 256);
std::string stringBuffer(myParserBuffer, 256);
stream->seek(0, true);
int index = stringBuffer.find('>');
if (index > 0) {
stringBuffer = stringBuffer.substr(0, index);
if (!ZLUnicodeUtil::isUtf8String(stringBuffer)) {
return false;
}
stringBuffer = ZLUnicodeUtil::toLower(stringBuffer);
int index = stringBuffer.find("\"iso-8859-1\"");
if (index > 0) {
useWindows1252 = true;
}
}
initialize(useWindows1252 ? "windows-1252" : 0);
std::size_t length;
do {
length = stream->read(myParserBuffer, BUFFER_SIZE);
if (!readFromBuffer(myParserBuffer, length)) {
break;
}
} while ((length == BUFFER_SIZE) && !myInterrupted);
stream->close();
shutdown();
return true;
}
ssize_t AudioAACStreamIn::read(void* buffer, ssize_t bytes)
{
// while ( GetLock(infd) == 1){ // lock is found
// ALOGI("lock found sleeping...\n");
// usleep(500000); // half a second for now
// }
//ALOGI("No lock found reading...\n");
AutoMutex lock(mLock);
struct timeval end;
gettimeofday(&end, NULL);
int diff = end.tv_usec-last.tv_usec+1000000ll*(end.tv_sec-last.tv_sec);
if(diff>250000||diff<0) { // 1/4sec
ALOGI("read:: Resetting time; had %d diff\n", diff);
gettimeofday(&last, NULL);
}
//readFromBuffer(bytes/sizeof(unsigned short),(unsigned short*)buffer); // bytes/2 is because I care about shorts, not bytes
readFromBuffer(bytes,(unsigned short*)buffer);
// advance the time time by a frame
last.tv_usec += (bytes * 1000000ll) / sizeof(int16_t) / AudioSystem::popCount(channels()) / sampleRate();
if(last.tv_usec>1000000ll) {
last.tv_sec++;
last.tv_usec-=1000000;
}
diff = last.tv_usec-end.tv_usec+1000000ll*(last.tv_sec-end.tv_sec);
if(diff>0) // If it's positive, sleep the difference between the expected end time and the actual end time
usleep(diff);
// set read lock. Must be unlocked by next write.
//SetLock(infd);
return bytes/sizeof(unsigned short);
}
GpsSatInfoHolder::GpsSatInfoHolder(Buffer *buf)
{
m_satInfo = 0;
readFromBuffer(buf);
}
Stack iteration (int sockfd, char* buffer, Stack stack) {
bzero(buffer, PACKET_SIZE_MAX);
struct sockaddr_in serv_addr;
socklen_t servlen = sizeof(serv_addr);
int n = recvfrom(sockfd, buffer, PACKET_SIZE_MAX, 0, (struct sockaddr *)&serv_addr ,&servlen);
if (n < 0)exception("ERROR reading from socket");
//printf("READ %d bytes fom a reply\n", n);
Packet p = readFromBuffer(buffer, n);
ppacket(p, "RECV");
// only possible exit
if (p.pt == EOT) {
if (p.sn != checkStackWindow(stack)) {
failure("Packet SN out of order on EOT");
return iteration(sockfd, buffer, stack);
}
ppacket(p, "SEND");
writeToBuffer(buffer, PACKET_SIZE_MAX, p);
int n = sendto(sockfd, buffer, p.pl, 0, (struct sockaddr *)&serv_addr, sizeof(serv_addr));
if (n < 0)exception("ERROR writing to socket");
stack = addPacket(stack, p);
return stack;
}
if (p.pt != DAT) {
failure("Packet Type other than EOT and DAT aren't supportted");
return iteration(sockfd, buffer, stack);
}
if (p.sn < stack.window_low || p.sn > stack.window_high) {
failure("Packet SN out of order");
return iteration(sockfd, buffer, stack);
}
p.pt = ACK;
stack = addPacket(stack, p);
// dummy window size management for now
stack.window_high = stack.size;
//stack = updateStackWindow(stack, p);
p.pl = PACKET_SIZE_MIN;
#ifdef GBN
p.sn = checkStackWindow(stack) - 1;
#endif
#ifdef SR
// don't need to do anything
#endif
ppacket(p, "SEND");
if (p.sn >= 0){
writeToBuffer(buffer, PACKET_SIZE_MAX, p);
int n = sendto(sockfd, buffer, p.pl, 0, (struct sockaddr *)&serv_addr, sizeof(serv_addr));
if (n < 0)exception("ERROR writing to socket");
}
return iteration(sockfd, buffer, stack);
}
void cluster_t::get_U_gpu(){
#ifdef USE_GPU
readFromBuffer(buffer_U,n*p,U,"buffer_U");
#endif
}
Foam::Istream& Foam::UIPstream::read(label& val)
{
readFromBuffer(val);
return *this;
}
Foam::Istream& Foam::UIPstream::read(doubleScalar& val)
{
readFromBuffer(val);
return *this;
}
Foam::Istream& Foam::IPstream::read(floatScalar& val)
{
readFromBuffer(val);
return *this;
}
void DeathCommand::unserialize( const char* buffer, size_t& index )
{
Message::unserialize( buffer, index );
readFromBuffer( m_deadActorID, buffer, index );
}
Istream& IPstream::read(doubleScalar& s)
{
readFromBuffer(s);
return *this;
}
Istream& IPstream::read(floatScalar& s)
{
readFromBuffer(s);
return *this;
}
Istream& IPstream::read(label& l)
{
readFromBuffer(l);
return *this;
}
