int test()
{
#ifdef CH_USE_HDF5
int error;
HDF5Handle testFile;
CH_assert(!testFile.isOpen());
error = testFile.open("data.h5", HDF5Handle::CREATE);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "File creation failed "<<error<<endl;
return error;
}
CH_assert(testFile.isOpen());
Box domain(IntVect::Zero, 20*IntVect::Unit);
DisjointBoxLayout plan1, plan2;
{
IntVectSet tags;
IntVect center = 10*IntVect::Unit;
setCircleTags(tags, 6, 1, center); //circle/sphere
buildDisjointBoxLayout(plan1, tags, domain);
tags.makeEmpty();
setCircleTags(tags, 5, 2, center);
buildDisjointBoxLayout(plan2, tags, domain);
}
if ( verbose )
{
pout() << "plan1: " << procID() << "...." << plan1 << endl;
pout() << "plan2: " << procID() << "...." << plan2 << endl;
}
//test LayoutData<Real> specialization
LayoutData<Real> specialReal(plan1);
LayoutData<Moment> vlPlan(plan1);
LevelData<BaseFab<int> > level1(plan1, 3, IntVect::Unit);
LevelData<BaseFab<int> > level2;
level2.define(level1);
level2.define(plan2, 1);
for (DataIterator i(level2.dataIterator()); i.ok(); ++i)
{
level2[i()].setVal(2);
}
level1.apply(values::setVal1);
level2.apply(values::setVal2);
HDF5HeaderData set1;
Real dx=0.004;
Box b1(IntVect(D_DECL6(1,2,1,1,2,1)), IntVect(D_DECL6(4,4,4,4,4,4)));
Box b2(IntVect(D_DECL6(5,2,1,5,2,1)), IntVect(D_DECL6(12,4,4,12,4,4)));
int currentStep = 2332;
set1.m_string["name"] = "set1";
set1.m_real["dx"] = dx;
set1.m_int["currentStep"] = currentStep;
set1.m_intvect["some intvect or other"] = b1.smallEnd();
set1.m_box["b1"] = b1;
set1.m_box["b2"] = b2;
testFile.setGroupToLevel(1);
error = write(testFile, plan1);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "box write failed "<<error<<endl;
return error;
}
error = write(testFile, level1, "level1 state vector");
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayoutData 1 write failed "<<error<<endl;
return error;
}
testFile.setGroupToLevel(2);
error = write(testFile, plan2);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "box2 write failed "<<error<<endl;
return error;
}
error = write(testFile, level2, "level2 state vector");
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayoutData 2 write failed "<<error<<endl;
return error;
}
LevelData<FArrayBox> state(plan2, 3);
state.apply(values::setVal3);
testFile.setGroupToLevel(0);
set1.writeToFile(testFile);
error = write(testFile, plan2);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "box2 write failed "<<error<<endl;
return error;
}
testFile.setGroup("/");
error = writeLevel(testFile, 0, state, 2, 1, 0.001, b2, 2);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayoutData 2 write failed "<<error<<endl;
return error;
}
set1.writeToFile(testFile);
set1.writeToFile(testFile);
testFile.close();
CH_assert(!testFile.isOpen());
// test the utility functions ReadUGHDF5 and WriteUGHDF5
WriteUGHDF5("UGIO.hdf5", plan2, state, domain);
ReadUGHDF5("UGIO.hdf5", plan2, state, domain);
//========================================================================
//
// now, read this data back in
//
//========================================================================
BoxLayoutData<BaseFab<int> > readlevel1, readlevel2;
error = testFile.open("data.h5", HDF5Handle::OPEN_RDONLY);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "File open failed "<<error<<endl;
return error;
}
testFile.setGroupToLevel(2);
Vector<Box> boxes;
error = read(testFile, boxes);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "box read failed "<<error<<endl;
return error;
}
boxes.sort();
Vector<int> assign;
error = LoadBalance(assign, boxes);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayout LoadBalance failed "<<error<<endl;
return error;
}
BoxLayout readplan2(boxes, assign);
readplan2.close();
error = read(testFile, readlevel2, "level2 state vector", readplan2);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayoutData<BaseFab<int>> read failed "<<error<<endl;
return error;
}
testFile.setGroupToLevel(1);
error = read(testFile, boxes);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "box read failed "<<error<<endl;
return error;
}
error = LoadBalance(assign, boxes);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayout LoadBalance failed "<<error<<endl;
return error;
}
BoxLayout readplan1(boxes, assign);
readplan1.close();
if ( verbose )
{
pout() << "readplan1: " << procID() << "...." << readplan1 << endl;
pout() << "readplan2: " << procID() << "...." << readplan2 << endl;
}
error = read(testFile, readlevel1, "level1 state vector", readplan1);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "BoxLayoutData<BaseFab<int>> read failed "<<error<<endl;
return error;
}
if ( verbose )
pout() << plan1<<readplan1<<endl;
// real test of IO, make sure the data is the same coming and going
DataIterator l1 = level1.dataIterator();
DataIterator rl1 = readlevel1.dataIterator();
DataIterator l2 = level2.dataIterator();
DataIterator rl2 = readlevel2.dataIterator();
if (level1.boxLayout().size() != readlevel1.boxLayout().size())
{
if ( verbose )
pout() << indent2 << "level1.size() != readl1.size() read failed "<<error<<endl;
return 1;
}
if (level2.boxLayout().size() != readlevel2.boxLayout().size())
{
if ( verbose )
pout() << indent2 << "level2.size() != readl2.size() read failed "<<error<<endl;
return 1;
}
// we can assume that BoxLayout IO is tested in HDF5boxIO
BaseFab<int>* before, *after;
for (; l1.ok(); ++l1, ++rl1)
{
before = &(level1[l1()]); after = &(readlevel1[rl1()]);
for (int c=0; c<before->nComp(); ++c)
{
for (BoxIterator it(level1.box(l1())); it.ok(); ++it)
{
if ((*before)(it(), c) != (*after)(it(), c))
{
if ( verbose )
pout() << indent2 << "l1 != readl1 read failed "<<error<<endl;
return 2;
}
}
}
}
for (; l2.ok(); ++l2, ++rl2)
{
before = &(level2[l2()]); after = &(readlevel2[rl2()]);
for (int c=0; c<before->nComp(); ++c)
{
for (BoxIterator it(level2.box(l2())); it.ok(); ++it)
{
if ((*before)(it(), c) != (*after)(it(), c))
{
if ( verbose )
pout() << indent2 << "level2 != readlevel2 read failed "<<error<<endl;
return 3;
}
}
}
}
LevelData<FArrayBox> readState;
Real dt, time;
int refRatio;
testFile.setGroup("/");
error = readLevel(testFile, 0, readState, dx, dt, time, b2, refRatio);
if (error != 0)
{
if ( verbose )
pout() << indent2 << "readLevel failed "<<error<<endl;
return error;
}
#ifndef CH_MPI
// OK, now try to read one FArrayBox at a time
// problem with DataIterator and running the out-of-core in parallel, so
// have to think about that for now BVS.
FArrayBox readFAB;
Interval interval(1,2);
testFile.setGroup("/");
int index=0;
for (DataIterator dit(state.dataIterator()); dit.ok(); ++index,++dit)
{
FArrayBox& fab = state[dit()];
readFArrayBox(testFile, readFAB, 0, index, interval);
for (BoxIterator it(state.box(dit())) ; it.ok() ; ++it)
{
if (readFAB(it(), 0) != fab(it(), 1))
{
if ( verbose )
pout() << indent2 << "state != after for out-of-core "<<error<<endl;
return 3;
}
}
}
#endif
testFile.close();
CH_assert(!testFile.isOpen());
#endif // CH_USE_HDF5
return 0;
}
void KstCurveDialogI::new_I() {
KstWriteLocker ml(&KST::vectorList.lock());
KstVectorList::Iterator VX, VY;
KstVectorList::Iterator EX, EY;
KstVCurvePtr curve;
KstPlot *plot;
if (_xVector->selectedVector().isEmpty()) {
KMessageBox::sorry(0L, i18n("New curve not made: define vectors first."));
return;
}
/* find VX and VY */
VX = KST::vectorList.findTag(_xVector->selectedVector());
VY = KST::vectorList.findTag(_yVector->selectedVector());
EX = KST::vectorList.findTag(_xError->selectedVector());
EY = KST::vectorList.findTag(_yError->selectedVector());
if (VX == KST::vectorList.end() || VY == KST::vectorList.end()) {
kdFatal() << "Bug in kst: the XVector field in plotDialog refers to "
<< "a non existant vector...." << endl;
}
KstReadLocker rl1(*VX), rl2(*VY);
QString tag_name = Select->currentText();
tag_name.replace(i18n("<New_Curve>"), (*VY)->tagName());
/* verify that the curve name is unique */
if (KST::dataTagNameNotUnique(tag_name)) {
return;
}
/* create the curve */
curve = new KstVCurve(tag_name, *VX, *VY,
EX != KST::vectorList.end() ? *EX : KstVectorPtr(0L),
EY != KST::vectorList.end() ? *EY : KstVectorPtr(0L),
_curveAppearance->color());
curve->setHasPoints(_curveAppearance->showPoints());
curve->setHasLines(_curveAppearance->showLines());
curve->Point.setType(_curveAppearance->pointType());
if (_curvePlacement->existingPlot()) {
/* assign curve to plot */
plot = KST::plotList.FindKstPlot(_curvePlacement->plotName());
plot->addCurve(curve);
}
if (_curvePlacement->newPlot()) {
/* assign curve to plot */
plot = KST::plotList.addPlot(QString::null, _curvePlacement->columns());
_curvePlacement->appendPlot(plot->tagName(), true);
plot->addCurve(curve);
plot->GenerateDefaultLabels();
}
KST::dataObjectList.lock().readLock();
KST::dataObjectList.append(curve.data());
KST::dataObjectList.lock().writeUnlock();
curve = 0L;
emit modified();
}