int main(int argc, char *argv[])
/* Process command line. */
{
optionInit(&argc, argv, options);
if (argc != 2)
usage();
fieldListIn = optionVal("fieldListIn", NULL);
fieldListOut = optionVal("fieldListOut", NULL);
identifier = optionVal("identifier", NULL);
database = optionVal("database", NULL);
checkFields = optionExists("fields");
foreignKeys = optionExists("keys");
dbCoverage = optionExists("dbCoverage");
tableCoverage = optionExists("tableCoverage");
checkTimes = optionExists("times");
if (optionExists("all"))
{
checkFields = foreignKeys = dbCoverage = tableCoverage = checkTimes = TRUE;
}
allDbHash = sqlHashOfDatabases();
if (database)
{
if (! hashLookup(allDbHash, database))
errAbort("specified database '%s' not available", database);
}
joinerCheck(argv[1]);
return 0;
}
struct slName *getDbListForGenome()
/* Get list of selectable databases. */
{
struct hash *hash = sqlHashOfDatabases();
struct slName *dbList = NULL;
addIfExists(hash, &dbList, database);
addIfExists(hash, &dbList, "uniProt");
addIfExists(hash, &dbList, "proteome");
addIfExists(hash, &dbList, "go");
addIfExists(hash, &dbList, "hgFixed");
addIfExists(hash, &dbList, "visiGene");
addIfExists(hash, &dbList, "ultra");
return dbList;
}
