optional<expr> mk_class_instance(environment const & env, io_state const & ios, local_context const & ctx,
name const & prefix, expr const & type, bool relax_opaque, bool use_local_instances,
unifier_config const & cfg) {
auto C = std::make_shared<class_instance_context>(env, ios, prefix, relax_opaque, use_local_instances);
if (!is_ext_class(C->tc(), type))
return none_expr();
expr meta = ctx.mk_meta(C->m_ngen, some_expr(type), type.get_tag());
unsigned depth = 0;
constraint c = mk_class_instance_cnstr(C, ctx, meta, depth);
unifier_config new_cfg(cfg);
new_cfg.m_discard = true;
new_cfg.m_use_exceptions = true;
new_cfg.m_pattern = true;
new_cfg.m_kind = C->m_conservative ? unifier_kind::VeryConservative : unifier_kind::Liberal;
try {
auto seq = unify(env, 1, &c, C->m_ngen.mk_child(), substitution(), new_cfg);
while (true) {
auto p = seq.pull();
lean_assert(p);
substitution s = p->first.first;
expr r = s.instantiate_all(meta);
if (!has_expr_metavar_relaxed(r))
return some_expr(r);
seq = p->second;
}
} catch (exception &) {
return none_expr();
}
}
bool match_pattern(type_checker & tc, expr const & pattern, declaration const & d, unsigned max_steps, bool cheap) {
name_generator ngen = tc.mk_ngen();
buffer<level> ls;
unsigned num_ls = d.get_num_univ_params();
for (unsigned i = 0; i < num_ls; i++)
ls.push_back(mk_meta_univ(ngen.next()));
expr dt = instantiate_type_univ_params(d, to_list(ls.begin(), ls.end()));
unsigned num_e = get_expect_num_args(tc, pattern);
unsigned num_d = get_expect_num_args(tc, dt);
if (num_e > num_d)
return false;
for (unsigned i = 0; i < num_d - num_e; i++) {
dt = tc.whnf(dt).first;
expr local = mk_local(ngen.next(), binding_domain(dt));
dt = instantiate(binding_body(dt), local);
}
try {
unifier_config cfg;
cfg.m_max_steps = max_steps;
cfg.m_kind = cheap ? unifier_kind::Cheap : unifier_kind::Liberal;
cfg.m_ignore_context_check = true;
auto r = unify(tc.env(), pattern, dt, tc.mk_ngen(), substitution(), cfg);
return static_cast<bool>(r.pull());
} catch (exception&) {
return false;
}
}
string subst (const string& model, const string& a0, const string& a1)
{
vector<string> args(10);
args[0] = a0;
args[1] = a1;
return substitution (model, args);
}
int main()
{
Test test;
substitution(test);
std::cout << test.integer << std::endl;
return 0;
}
string subst (const string& model, const string& a0, const string& a1, const string& a2, const string& a3)
{
vector<string> args(10);
args[0] = a0;
args[1] = a1;
args[2] = a2;
args[3] = a3;
return substitution (model, args);
}
string subst (const string& model, const string& a0, const string& a1, const string& a2, const string& a3, const string& a4, const string& a5, const string& a6)
{
vector<string> args(10);
args[0] = a0;
args[1] = a1;
args[2] = a2;
args[3] = a3;
args[4] = a4;
args[5] = a5;
args[6] = a6;
return substitution (model, args);
}
QVariant QSystemLocalePrivate::toString(const QDate &date, QLocale::FormatType type)
{
SYSTEMTIME st;
memset(&st, 0, sizeof(SYSTEMTIME));
st.wYear = date.year();
st.wMonth = date.month();
st.wDay = date.day();
DWORD flags = (type == QLocale::LongFormat ? DATE_LONGDATE : DATE_SHORTDATE);
wchar_t buf[255];
if (GetDateFormat(lcid, flags, &st, NULL, buf, 255)) {
QString format = QString::fromWCharArray(buf);
if (substitution() == SAlways)
substituteDigits(format);
return format;
}
return QString();
}
void potential_mut(int codon[], double *s_total)
{
int k, l, same, nonsense, substcodon[3][3][3];
substitution(codon, substcodon);
for(k = 0; k < 3; k++) {
same = 0;
nonsense = 0;
for(l = 0; l < 3; l++) {
if(aa[calc_codon(substcodon[k][l])] == stopcodon) {
nonsense++;
} else {
if(aa[calc_codon(substcodon[k][l])] == aa[calc_codon(codon)]) same++;
}
}
*s_total += (double)same / (double)(3 - nonsense);
}
}
QVariant QSystemLocalePrivate::toString(const QTime &time, QLocale::FormatType)
{
SYSTEMTIME st;
memset(&st, 0, sizeof(SYSTEMTIME));
st.wHour = time.hour();
st.wMinute = time.minute();
st.wSecond = time.second();
st.wMilliseconds = 0;
DWORD flags = 0;
wchar_t buf[255];
if (GetTimeFormat(lcid, flags, &st, NULL, buf, 255)) {
QString format = QString::fromWCharArray(buf);
if (substitution() == SAlways)
substituteDigits(format);
return format;
}
return QString();
}
/**
* Text substitution. Creates a string by replacing all the $n
* occurences in the model string, with the corresponding arguments.
* Example :
* subst("float $0 = $1;", "var", T(10.2))
*/
string subst (const string& model, const vector<string>& args)
{
return substitution(model, args);
}
/** Run alignment algorithm.
\param first_last Last aligned position in first sequence (output)
\param second_last Last aligned position in second sequence (output)
*/
void align(int& first_last, int& second_last) const {
adjust_matrix_size();
limit_range();
make_frame();
ASSERT_TRUE(!local() || max_errors() == -1);
int& r_row = first_last;
int& r_col = second_last;
r_row = r_col = -1;
for (int row = 0; row <= max_row(); row++) {
int start_col = min_col(row);
int stop_col = max_col(row);
int min_score_col = start_col;
for (int col = start_col; col <= stop_col; col++) {
ASSERT_TRUE(col >= 0 && col < side());
ASSERT_TRUE(in(row, col));
int match = at(row - 1, col - 1) +
substitution(row, col);
int gap1 = at(row, col - 1) + gap_penalty();
int gap2 = at(row - 1, col) + gap_penalty();
int score = std::min(match, std::min(gap1, gap2));
if (local()) {
score = std::min(score, 0);
}
at(row, col) = score;
if (score < at(row, min_score_col)) {
min_score_col = col;
}
track(row, col) = (score == match) ? MATCH :
(score == gap1) ? COL_INC :
ROW_INC;
}
if (max_errors() != -1 &&
at(row, min_score_col) > max_errors()) {
break;
}
r_row = row;
r_col = min_score_col;
}
if (max_errors() == -1) {
// col -> max_col in this row
ASSERT_TRUE(in(max_row(), max_col(max_row())));
ASSERT_EQ(r_row, max_row());
r_col = max_col(max_row());
// if stopped earlier because of gap range
int last_row = contents().first_size() - 1;
int last_col = contents().second_size() - 1;
if (r_row == last_row) {
while (r_col < last_col) {
r_col += 1;
track(r_row, r_col) = COL_INC;
}
} else if (r_col == last_col) {
while (r_row < last_row) {
r_row += 1;
track(r_row, r_col) = ROW_INC;
}
} else {
throw Exception("row and column are not last");
}
}
}
format goal::pp(formatter const & fmt) const {
return pp(fmt, substitution());
}
/** \brief Given a term <tt>a : a_type</tt>, and a metavariable \c m, creates a constraint
that considers coercions from a_type to the type assigned to \c m. */
constraint mk_coercion_cnstr(type_checker & from_tc, type_checker & to_tc, coercion_info_manager & infom,
expr const & m, expr const & a, expr const & a_type,
justification const & j, unsigned delay_factor, bool lift_coe) {
auto choice_fn = [=, &from_tc, &to_tc, &infom](expr const & meta, expr const & d_type, substitution const & s) {
expr new_a_type;
justification new_a_type_jst;
if (is_meta(a_type)) {
auto p = substitution(s).instantiate_metavars(a_type);
new_a_type = p.first;
new_a_type_jst = p.second;
} else {
new_a_type = a_type;
}
if (is_meta(new_a_type)) {
if (delay_factor < to_delay_factor(cnstr_group::DelayedChoice)) {
// postpone...
return lazy_list<constraints>(constraints(mk_coercion_cnstr(from_tc, to_tc, infom, m, a, a_type, justification(),
delay_factor+1, lift_coe)));
} else {
// giveup...
return lazy_list<constraints>(constraints(mk_eq_cnstr(meta, a, justification())));
}
}
constraint_seq cs;
new_a_type = from_tc.whnf(new_a_type, cs);
if ((lift_coe && is_pi_meta(d_type)) || (!lift_coe && is_meta(d_type))) {
// case-split
buffer<expr> locals;
expr it_from = new_a_type;
expr it_to = d_type;
while (is_pi(it_from) && is_pi(it_to)) {
expr dom_from = binding_domain(it_from);
expr dom_to = binding_domain(it_to);
if (!from_tc.is_def_eq(dom_from, dom_to, justification(), cs))
return lazy_list<constraints>();
expr local = mk_local(mk_fresh_name(), binding_name(it_from), dom_from, binder_info());
locals.push_back(local);
it_from = instantiate(binding_body(it_from), local);
it_to = instantiate(binding_body(it_to), local);
}
buffer<expr> alts;
get_coercions_from(from_tc.env(), it_from, alts);
expr fn_a;
if (!locals.empty())
fn_a = mk_local(mk_fresh_name(), "f", new_a_type, binder_info());
buffer<constraints> choices;
buffer<expr> coes;
// first alternative: no coercion
constraint_seq cs1 = cs + mk_eq_cnstr(meta, a, justification());
choices.push_back(cs1.to_list());
unsigned i = alts.size();
while (i > 0) {
--i;
expr coe = alts[i];
if (!locals.empty())
coe = Fun(fn_a, Fun(locals, mk_app(coe, mk_app(fn_a, locals))));
expr new_a = copy_tag(a, mk_app(coe, a));
coes.push_back(coe);
constraint_seq csi = cs + mk_eq_cnstr(meta, new_a, new_a_type_jst);
choices.push_back(csi.to_list());
}
return choose(std::make_shared<coercion_elaborator>(infom, meta,
to_list(choices.begin(), choices.end()),
to_list(coes.begin(), coes.end())));
} else {
list<expr> coes = get_coercions_from_to(from_tc, to_tc, new_a_type, d_type, cs, lift_coe);
if (is_nil(coes)) {
expr new_a = a;
infom.erase_coercion_info(a);
cs += mk_eq_cnstr(meta, new_a, new_a_type_jst);
return lazy_list<constraints>(cs.to_list());
} else if (is_nil(tail(coes))) {
expr new_a = copy_tag(a, mk_app(head(coes), a));
infom.save_coercion_info(a, new_a);
cs += mk_eq_cnstr(meta, new_a, new_a_type_jst);
return lazy_list<constraints>(cs.to_list());
} else {
list<constraints> choices = map2<constraints>(coes, [&](expr const & coe) {
expr new_a = copy_tag(a, mk_app(coe, a));
constraint c = mk_eq_cnstr(meta, new_a, new_a_type_jst);
return (cs + c).to_list();
});
return choose(std::make_shared<coercion_elaborator>(infom, meta, choices, coes, false));
}
}
};
return mk_choice_cnstr(m, choice_fn, delay_factor, true, j);
}
constraint mk_class_instance_root_cnstr(std::shared_ptr<class_instance_context> const & C, local_context const & _ctx,
expr const & m, bool is_strict, unifier_config const & cfg, delay_factor const & factor) {
environment const & env = C->env();
justification j = mk_failed_to_synthesize_jst(env, m);
auto choice_fn = [=](expr const & meta, expr const & meta_type, substitution const & s,
name_generator const & ngen) {
environment const & env = C->env();
auto cls_name_it = is_ext_class(C->tc(), meta_type);
if (!cls_name_it) {
// do nothing, since type is not a class.
return lazy_list<constraints>(constraints());
}
local_context ctx = _ctx.instantiate(substitution(s));
pair<expr, justification> mj = update_meta(meta, s);
expr new_meta = mj.first;
justification new_j = mj.second;
unsigned depth = 0;
constraint c = mk_class_instance_cnstr(C, ctx, new_meta, depth);
unifier_config new_cfg(cfg);
new_cfg.m_discard = false;
new_cfg.m_use_exceptions = false;
new_cfg.m_pattern = true;
new_cfg.m_kind = C->m_conservative ? unifier_kind::VeryConservative : unifier_kind::Liberal;
auto to_cnstrs_fn = [=](substitution const & subst, constraints const & cnstrs) -> constraints {
substitution new_s = subst;
// some constraints may have been postponed (example: universe level constraints)
constraints postponed = map(cnstrs,
[&](constraint const & c) {
// we erase internal justifications
return update_justification(c, mk_composite1(j, new_j));
});
metavar_closure cls(new_meta);
cls.add(meta_type);
bool relax = C->m_relax;
constraints cs = cls.mk_constraints(new_s, new_j, relax);
return append(cs, postponed);
};
auto no_solution_fn = [=]() {
if (is_strict)
return lazy_list<constraints>();
else
return lazy_list<constraints>(constraints());
};
unify_result_seq seq1 = unify(env, 1, &c, ngen, substitution(), new_cfg);
unify_result_seq seq2 = filter(seq1, [=](pair<substitution, constraints> const & p) {
substitution new_s = p.first;
expr result = new_s.instantiate(new_meta);
// We only keep complete solutions (modulo universe metavariables)
return !has_expr_metavar_relaxed(result);
});
if (get_class_unique_class_instances(C->m_ios.get_options())) {
optional<expr> solution;
substitution subst;
constraints cnstrs;
for_each(seq2, [&](pair<substitution, constraints> const & p) {
subst = p.first;
cnstrs = p.second;
expr next_solution = subst.instantiate(new_meta);
if (solution) {
throw_class_exception(m, [=](formatter const & fmt) {
format r = format("ambiguous class-instance resolution, "
"there is more than one solution");
r += pp_indent_expr(fmt, *solution);
r += compose(line(), format("and"));
r += pp_indent_expr(fmt, next_solution);
return r;
});
} else {
solution = next_solution;
}
});
if (!solution) {
return no_solution_fn();
} else {
// some constraints may have been postponed (example: universe level constraints)
return lazy_list<constraints>(to_cnstrs_fn(subst, cnstrs));
}
} else {
if (try_multiple_instances(env, *cls_name_it)) {
lazy_list<constraints> seq3 = map2<constraints>(seq2, [=](pair<substitution, constraints> const & p) {
return to_cnstrs_fn(p.first, p.second);
});
if (is_strict) {
return seq3;
} else {
// make sure it does not fail by appending empty set of constraints
return append(seq3, lazy_list<constraints>(constraints()));
}
} else {
auto p = seq2.pull();
if (!p)
return no_solution_fn();
else
return lazy_list<constraints>(to_cnstrs_fn(p->first.first, p->first.second));
}
}
};
bool owner = false;
bool relax = C->m_relax;
return mk_choice_cnstr(m, choice_fn, factor, owner, j, relax);
}
QVariant QSystemLocalePrivate::toCurrencyString(const QSystemLocale::CurrencyToStringArgument &arg)
{
QString value;
switch (arg.value.type()) {
case QVariant::Int:
value = QLocalePrivate::longLongToString(QLatin1Char('0'), QLatin1Char(','), QLatin1Char('+'), QLatin1Char('-'),
arg.value.toInt(), -1, 10, -1, QLocale::OmitGroupSeparator);
break;
case QVariant::UInt:
value = QLocalePrivate::unsLongLongToString(QLatin1Char('0'), QLatin1Char(','), QLatin1Char('+'),
arg.value.toUInt(), -1, 10, -1, QLocale::OmitGroupSeparator);
break;
case QVariant::Double:
value = QLocalePrivate::doubleToString(QLatin1Char('0'), QLatin1Char('+'), QLatin1Char('-'),
QLatin1Char(' '), QLatin1Char(','), QLatin1Char('.'),
arg.value.toDouble(), -1, QLocalePrivate::DFDecimal, -1, QLocale::OmitGroupSeparator);
break;
case QVariant::LongLong:
value = QLocalePrivate::longLongToString(QLatin1Char('0'), QLatin1Char(','), QLatin1Char('+'), QLatin1Char('-'),
arg.value.toLongLong(), -1, 10, -1, QLocale::OmitGroupSeparator);
break;
case QVariant::ULongLong:
value = QLocalePrivate::unsLongLongToString(QLatin1Char('0'), QLatin1Char(','), QLatin1Char('+'),
arg.value.toULongLong(), -1, 10, -1, QLocale::OmitGroupSeparator);
break;
default:
return QVariant();
}
QVarLengthArray<wchar_t, 64> out(64);
QString decimalSep;
QString thousandSep;
CURRENCYFMT format;
CURRENCYFMT *pformat = NULL;
if (!arg.symbol.isEmpty()) {
format.NumDigits = getLocaleInfo_int(lcid, LOCALE_ICURRDIGITS);
format.LeadingZero = getLocaleInfo_int(lcid, LOCALE_ILZERO);
decimalSep = getLocaleInfo(lcid, LOCALE_SMONDECIMALSEP);
format.lpDecimalSep = (wchar_t *)decimalSep.utf16();
thousandSep = getLocaleInfo(lcid, LOCALE_SMONTHOUSANDSEP);
format.lpThousandSep = (wchar_t *)thousandSep.utf16();
format.NegativeOrder = getLocaleInfo_int(lcid, LOCALE_INEGCURR);
format.PositiveOrder = getLocaleInfo_int(lcid, LOCALE_ICURRENCY);
format.lpCurrencySymbol = (wchar_t *)arg.symbol.utf16();
// grouping is complicated and ugly:
// int(0) == "123456789.00" == string("0")
// int(3) == "123,456,789.00" == string("3;0")
// int(30) == "123456,789.00" == string("3;0;0")
// int(32) == "12,34,56,789.00" == string("3;2;0")
// int(320)== "1234,56,789.00" == string("3;2")
QString groupingStr = getLocaleInfo(lcid, LOCALE_SMONGROUPING);
format.Grouping = groupingStr.remove(QLatin1Char(';')).toInt();
if (format.Grouping % 10 == 0) // magic
format.Grouping /= 10;
else
format.Grouping *= 10;
pformat = &format;
}
int ret = ::GetCurrencyFormat(lcid, 0, reinterpret_cast<const wchar_t *>(value.utf16()),
pformat, out.data(), out.size());
if (ret == 0 && GetLastError() == ERROR_INSUFFICIENT_BUFFER) {
ret = ::GetCurrencyFormat(lcid, 0, reinterpret_cast<const wchar_t *>(value.utf16()),
pformat, out.data(), 0);
out.resize(ret);
::GetCurrencyFormat(lcid, 0, reinterpret_cast<const wchar_t *>(value.utf16()),
pformat, out.data(), out.size());
}
value = QString::fromWCharArray(out.data());
if (substitution() == SAlways)
substituteDigits( value);
return value;
}
/**
* @brief parse
* @param[in] fp : file stream
* @param[out] conf : configuration
* @param[in] line : reading line
* @retval ==0 : success
* @retval < 0 : failure
*/
inline
int file_stream::_parse_(FILE *fp, configuration *conf, int *line)
{
char ws[512];
int ret;
LogDebugf("Begin - int FileStream::_parse_(%p, %p, %p)\n", fp, conf, line);
LogIndent();
// ---> file read loop
while( !::feof(fp) ){
// zero clear workspace
::memset(ws, 0, sizeof(ws));
// file read
if( !::fgets(ws + ::strlen(ws), sizeof(ws) - ::strlen(ws), fp) )
break;
// count line number
(*line)++;
LogDebugf("line \'%d\'\n", *line);
conf->show(0);
// erase comment
erase_comment(ws);
if( (ret = find_separater(ws)) < 0){
if( unnamed(ws, conf, line) < 0){
LogUnindent();
LogDebugf("Fail - int FileStream::_parse_(%p, %p, %p)", fp, conf, line);
return -1;
}
}
else {
LogDebugf("get separater \'%c\'\n", ws[ret]);
switch( ws[ret] ){
// substruct
case TokenSubst:
{
ws[ret] = '\0';
if( substitution(fp, ws, ws + ret + 1, conf, line) < 0){
LogUnindent();
LogDebugf("Fail - int FileStream::_parse_(%p, %p, %p)", fp, conf, line);
return -1;
}
}
break;
// nesting
case TokenBeginScope:
LogDebug("invalid nesting");
break;
case TokenEndScope:
if( unnamed(ws, conf, line) < 0){
LogDebugf("configure read error at line %d\n", *line);
LogUnindent();
LogDebugf(" Fail: int FileStream::_parse_(%p, %p, %p)", fp, conf, line);
return -1;
}
return 0;
// unnamed value
case TokenComment:
case TokenEndValue:
case TokenEndLine:
if( unnamed(ws, conf, line) < 0){
LogDebugf("configure read error at line %d\n", *line);
LogUnindent();
LogDebugf(" Fail: int FileStream::_parse_(%p, %p, %p)", fp, conf, line);
return -1;
}
break;
} // <--- switch
}
}
// <--- file read loop
LogUnindent();
LogDebugf(" End: int FileStream::_parse_(%p, %p, %p)\n", fp, conf, line);
return 0;
}
edit_distance(char * X,char * Y, int x1,int x2, int y1, int y2)//,int a,int b, int c, int d)
{ //this function calculates the edit distance between 2 strings
int i,j,k;
//int maxDist,minI,minJ;
int del,ins,sub;
//int dist;
//initialization
int M ;
M= x2-x1+1;
int N ;
N= y2-y1+1;
char *A = malloc(sizeof(char)*(M+1));
char *B = malloc(sizeof(char)*(N+1));
strncpy(A, &(X[x1]), M);
strncpy(B, &(Y[y1]), N);
//printf("point3\n");
int distance[M][N]; //create a MxN matrix where D(i,j) stores the edit distance between A1....AM to B1.....BN
/*int trace[M][N]; // create a matrix to store the pointers for backtracing */
char alignA[M+N]; // aligned sequence for A
char alignB[M+N]; // aligned sequence for B
//printf("point4\n");
for(i=0;i<M;i++) distance[i][0] = -i;
for(j=0;j<N;j++) distance[0][j] = -j;
//printf("point5\n");
/*for(i=0;i<M;i++) trace[i][0] = 0;
for(j=0;j<N;j++) trace[0][j] = 0;*/
/*printf("point6\n");
maxDist=0;
minI=0;
minJ=0;
*/
//fill in the matrix
for(i=1;i<M;i++){ //each i = i...M
for (j= 1;j<N;j++){//each j = 1....N
/******/
//distance[0][0] =
//dist = 0;
//trace[i][j] = STOP;
/********/
printf("point6.1: j= %d, i = %d\n",j,i);
del = distance[i-1][j] - 1; //deletion penalty is 1
//printf("point6.3\n");
ins = distance[i][j-1] - 1; // insertion penalty is 1
//printf("point6.5: j= %d, i = %d\n",j,i);
sub = distance[i-1][j-1] - substitution(A[i-1],B[j-1]); // substitution penalty is 1
printf("comparing %c, and %c\n",A[i-1],B[j-1]);
printf("del is: %d, ins is: %d, sub is %d\n",del,ins,sub);
//printf("point6.8: j= %d, i = %d\n",j,i);
distance[i][j] = max (del, ins, sub); // D(i-1,j)-1: deletion ; D(i,j-1)-1 : insertion ; M(i-1,j-1)-S(A[i],B[j]): substitution
//printf("point6.9: j= %d, i = %d\n",j,i);
printf("what is distance? ---------- %d\n",distance[i][j]);
// store the trace matrix based on the different operations we perform
/*if (distance[i][j] == del)
trace[i][j] = LEFT; // LEFT for insertion; DOWN for deletion; DIAG for substitution
if (distance[i][j] == ins)
trace[i][j] = UP; //DOWN
if (distance[i][j] == sub)
trace[i][j] = DIAG; //DIAG
*/
}
}
/****print the trace graph****/
/*for(i=0;i<M;i++){
for(j=0;j<N;j++){
printf("%.2i.",abs(trace[i][j]));
}
printf("\n");
} */
printf("\n");
for(i=0;i<M;i++){
for(j=0;j<N;j++){
printf("%.2i.",(distance[i][j]));
}
printf("\n");
}
//printf("point8\n");
//printf("minI = %d,minJ=%d\n",minI,minJ);
//printf("maxDist is: %d\n",maxDist);
//now we create aligned sequence alignA and alignB (in reverse order)
i = M-1; //start from the top right ie. backtrace
j = N-1;
k = 0; // this is the index for the aligned sequence
printf("start!\n");
//backtrace(i,j,k);
while (k<M+N){
if( i>0 && j>0 && (distance[i][j] == distance [i-1][j-1]) ){ // this suggest a match between the two sequence
alignB[k] = B[j-1];
alignA[k] = A[i-1];
i=i-1;
j=j-1;
k++;
}
if(i>0 && j>0 && (distance[i][j] == distance[i-1][j-1] -1) ){ //this suggest a mismatch
alignB[k]= B[j-1];
alignA[k]= A[i-1];
i=i-1;
j=j-1;
k++;
}
if(j>0 && (distance[i][j] == distance[i][j-1] -1) ) { // this suggest a insertion
alignA[k] = '-';
alignB[k] = B[j-1];
j=j-1 ;
k++;
}
if(i>0 && (distance[i][j] == distance[i-1][j] -1)){ // this suggest a deletion
alignA[k] = A[i-1];
alignB[k] = '-';
i=i-1 ;
k++;
}
if(i==0 && j ==0)
break;
}
/* print in reverse order */
printf("printing!\n");
for(i=k-1;i>=0;i--) printf("%c",alignB[i]);
//printf("%s",alignB);
printf("\n");
//printf("%s",alignA);
for(i=k-1;i>=0;i--) printf("%c",alignA[i]);
printf("\n");
}
/// computes a junction tree from an elimination tree
void DefaultJunctionTreeStrategy::__computeJunctionTree() {
// if no triangulation is assigned to the strategy, do nothing
if (!__triangulation)
return;
// get the elimination tree
const CliqueGraph &elim_tree = __triangulation->eliminationTree();
// copy the elimination tree into the junction tree
__junction_tree = elim_tree;
// mark all the edges of the junction tree to false
EdgeProperty<bool> mark = __junction_tree.edgesProperty(false);
// create a vector indicating by which clique a given clique has been
// substituted during the transformation from the elimination tree to the
// junction tree. Assume that clique J of the elmination tree has been
// substituted by clique K of the elimination tree, and that clique J
// (resp. K) was the jth (resp. kth) one created during the triangulation
// process. Then, in the vector below, substitution[j] = k.
const std::vector<NodeId> &elim_order = __triangulation->eliminationOrder();
std::vector<unsigned int> substitution(elim_order.size());
for (unsigned int i = 0; i < substitution.size(); ++i)
substitution[i] = i;
// for all cliques C_i, from the last one created to the first one, check if
// there exists a parent C_j (a neighbour created before C_i) such that
// |C_j| = |C_i| + 1 and such that the edge is not marked. In this case, this
// means that C_j contains C_i. Hence, we should remove C_i, and link all of
// its neighbours to C_j. These links will be marked to true as no such
// neighbour can be included in C_j (and conversely).
// NodeSetIterator iter;
for (unsigned int i = elim_order.size() - 1; i < elim_order.size(); --i) {
NodeId C_i = i;
unsigned int card_C_i = __junction_tree.clique(C_i).size();
// search for C_j such that |C_j| = [C_i| + 1
NodeId C_j = C_i;
for (const auto C_jj : __junction_tree.neighbours(C_i))
if ((i > C_jj) && !mark[Edge(C_i, C_jj)] &&
(__junction_tree.clique(C_jj).size() == card_C_i + 1)) {
// ok, here we found a parent such that |C_jj| = [C_i| + 1
C_j = C_jj;
__junction_tree.eraseEdge(Edge(C_i, C_j));
break;
}
// if we found a C_j, link the neighbours of C_i to C_j
if (C_j != C_i) {
for (const auto nei : __junction_tree.neighbours(C_i)) {
__junction_tree.addEdge(C_j, nei);
mark.insert(Edge(C_j, nei), true);
}
substitution[i] = C_j;
__junction_tree.eraseNode(C_i);
}
}
// compute the transitive closure of vector substitution
for (unsigned int i = 0; i < substitution.size(); ++i)
substitution[i] = substitution[substitution[i]];
// using the transitive closure of vector substitution, compute for each node
// the clique of the junction tree that was created by its elimination during
// the triangulation
for (unsigned int i = 0; i < elim_order.size(); ++i) {
__node_2_junction_clique.insert(elim_order[i], substitution[i]);
}
__has_junction_tree = true;
}
/** \brief Create a "choice" constraint that postpones the resolution of a calc proof step.
By delaying it, we can perform quick fixes such as:
- adding symmetry
- adding !
- adding subst
*/
constraint mk_calc_proof_cnstr(environment const & env, options const & opts,
old_local_context const & _ctx, expr const & m, expr const & _e,
constraint_seq const & cs, unifier_config const & cfg,
info_manager * im, update_type_info_fn const & fn) {
justification j = mk_failed_to_synthesize_jst(env, m);
auto choice_fn = [=](expr const & meta, expr const & _meta_type, substitution const & _s) {
old_local_context ctx = _ctx;
expr e = _e;
substitution s = _s;
expr meta_type = _meta_type;
type_checker_ptr tc = mk_type_checker(env);
constraint_seq new_cs = cs;
expr e_type = tc->infer(e, new_cs);
e_type = s.instantiate(e_type);
tag g = e.get_tag();
bool calc_assistant = get_elaborator_calc_assistant(opts);
if (calc_assistant) {
// add '!' is needed
while (is_norm_pi(*tc, e_type, new_cs)) {
binder_info bi = binding_info(e_type);
if (!bi.is_implicit() && !bi.is_inst_implicit()) {
if (!has_free_var(binding_body(e_type), 0)) {
// if the rest of the type does not reference argument,
// then we also stop consuming arguments
break;
}
}
expr imp_arg = ctx.mk_meta(some_expr(binding_domain(e_type)), g);
e = mk_app(e, imp_arg, g);
e_type = instantiate(binding_body(e_type), imp_arg);
}
if (im)
fn(e);
}
e_type = head_beta_reduce(e_type);
expr const & meta_type_fn = get_app_fn(meta_type);
expr const & e_type_fn = get_app_fn(e_type);
if (is_constant(meta_type_fn) && (!is_constant(e_type_fn) || const_name(e_type_fn) != const_name(meta_type_fn))) {
// try to make sure meta_type and e_type have the same head symbol
if (!try_normalize_to_head(env, const_name(meta_type_fn), e_type, new_cs) &&
is_constant(e_type_fn)) {
try_normalize_to_head(env, const_name(e_type_fn), meta_type, new_cs);
}
}
auto try_alternative = [&](expr const & e, expr const & e_type, constraint_seq fcs, bool conservative) {
justification new_j = mk_type_mismatch_jst(e, e_type, meta_type);
if (!tc->is_def_eq(e_type, meta_type, new_j, fcs))
throw unifier_exception(new_j, s);
buffer<constraint> cs_buffer;
fcs.linearize(cs_buffer);
metavar_closure cls(meta);
cls.add(meta_type);
cls.mk_constraints(s, j, cs_buffer);
unifier_config new_cfg(cfg);
new_cfg.m_discard = false;
new_cfg.m_kind = conservative ? unifier_kind::Conservative : unifier_kind::Liberal;
unify_result_seq seq = unify(env, cs_buffer.size(), cs_buffer.data(), substitution(), new_cfg);
auto p = seq.pull();
lean_assert(p);
substitution new_s = p->first.first;
constraints postponed = map(p->first.second,
[&](constraint const & c) {
// we erase internal justifications
return update_justification(c, j);
});
expr new_e = new_s.instantiate(e);
if (conservative && has_expr_metavar_relaxed(new_s.instantiate_all(e)))
throw_elaborator_exception("solution contains metavariables", e);
if (im)
im->instantiate(new_s);
constraints r = cls.mk_constraints(new_s, j);
buffer<expr> locals;
expr mvar = get_app_args(meta, locals);
expr val = Fun(locals, new_e);
r = cons(mk_eq_cnstr(mvar, val, j), r);
return append(r, postponed);
};
if (!get_elaborator_calc_assistant(opts)) {
bool conservative = false;
return try_alternative(e, e_type, new_cs, conservative);
} else {
// TODO(Leo): after we have the simplifier and rewriter tactic, we should revise
// this code. It is "abusing" the higher-order unifier.
{
// Try the following possible intrepretations using a "conservative" unification procedure.
// That is, we only unfold definitions marked as reducible.
// Assume pr is the proof provided.
// 1. pr
bool conservative = true;
try { return try_alternative(e, e_type, new_cs, conservative); } catch (exception & ex) {}
// 2. eq.symm pr
constraint_seq symm_cs = new_cs;
auto symm = apply_symmetry(env, ctx, tc, e, e_type, symm_cs, g);
if (symm) {
try { return try_alternative(symm->first, symm->second, symm_cs, conservative); } catch (exception &) {}
}
// 3. subst pr (eq.refl lhs)
constraint_seq subst_cs = new_cs;
if (auto subst = apply_subst(env, ctx, tc, e, e_type, meta_type, subst_cs, g)) {
try { return try_alternative(subst->first, subst->second, subst_cs, conservative); } catch (exception&) {}
}
// 4. subst (eq.symm pr) (eq.refl lhs)
if (symm) {
constraint_seq subst_cs = symm_cs;
if (auto subst = apply_subst(env, ctx, tc, symm->first, symm->second,
meta_type, subst_cs, g)) {
try { return try_alternative(subst->first, subst->second, subst_cs, conservative); }
catch (exception&) {}
}
}
}
{
// Try the following possible insterpretations using the default unification procedure.
// 1. pr
bool conservative = false;
std::unique_ptr<throwable> saved_ex;
try {
return try_alternative(e, e_type, new_cs, conservative);
} catch (exception & ex) {
saved_ex.reset(ex.clone());
}
// 2. eq.symm pr
constraint_seq symm_cs = new_cs;
auto symm = apply_symmetry(env, ctx, tc, e, e_type, symm_cs, g);
if (symm) {
try { return try_alternative(symm->first, symm->second, symm_cs, conservative); }
catch (exception &) {}
}
// We use the exception for the first alternative as the error message
saved_ex->rethrow();
lean_unreachable();
}
}
};
bool owner = false;
return mk_choice_cnstr(m, choice_fn, to_delay_factor(cnstr_group::Epilogue), owner, j);
}
