int main(int argc, char* argv[]) {
START_EASYLOGGINGPP(argc, argv);
parseArgs(argc, argv);
LOG(INFO) << "Initializing alignment provider";
DazAlnProvider* ap;
ap = new DazAlnProvider(popts);
TrgBuf trgBuf(20);
CnsBuf cnsBuf(10);
std::thread writerThread(Writer, std::ref(cnsBuf));
std::vector<std::thread> cnsThreads;
for (int i=0; i < popts.threads; i++) {
std::thread ct(Consensus, i, std::ref(trgBuf), std::ref(cnsBuf));
cnsThreads.push_back(std::move(ct));
}
std::thread readerThread(Reader, std::ref(trgBuf), ap);
writerThread.join();
std::vector<std::thread>::iterator it;
for (it = cnsThreads.begin(); it != cnsThreads.end(); ++it)
it->join();
readerThread.join();
delete ap;
return 0;
}
int main(int argc, char* argv[]) {
std::string input_filename = FILENAME_TESTFILE;
std::string scope_filename = SCOPE_PARAMETERFILE;
std::string output_filename = OUTPUT_FILENAME;
if(argc > 1) {
input_filename = argv[1];
scope_filename = argv[1];
}
if(argc > 2) {
output_filename = argv[2];
}
std::cout << "Args read (" << input_filename << ", " << output_filename << ")" << std::endl;
OutputBuffer inputBuffer(CHUNK_BUFFER_COUNT, 1);
GrayBatReader<Output> gbReader(masterUri, onlineDspUri);
std::cout << "Buffer created." << std::endl;
std::thread writerThread([&inputBuffer](){
std::fstream out;
out.open("results.txt");
while(!inputBuffer.isFinished()) {
auto elem = inputBuffer.pop();
out << elem.status << " " << elem.woffset << " ";
std::cout << elem.status << " " << elem.woffset << " ";
for(auto p : elem.param) out << p << " ";
out << std::endl;
std::cout << std::endl;
}
out.close();
});
gbReader.readToBuffer();
std::cout << "Data read." << std::endl;
//Make sure all results are written back
writerThread.join();
return 0;
}
