CSeq_annot_EditHandle
CSeq_entry_EditHandle::AttachAnnot(CRef<CSeq_annot_Info> annot) const
{
typedef CAttachAnnot_EditCommand<CRef<CSeq_annot_Info> > TCommand;
CCommandProcessor processor(x_GetScopeImpl());
return processor.run(new TCommand(*this, annot, x_GetScopeImpl()));
}
void CBioseq_EditHandle::x_Detach(void) const
{
typedef CRemoveBioseq_EditCommand TCommand;
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new TCommand(*this, x_GetScopeImpl()));
// x_GetScopeImpl().RemoveBioseq(*this);
}
CSeq_annot_EditHandle
CSeq_entry_EditHandle::AttachAnnot(const CSeq_annot_EditHandle& annot) const
{
typedef CAttachAnnot_EditCommand<CSeq_annot_EditHandle> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
return processor.run(new TCommand(*this, annot, x_GetScopeImpl()));
//return x_GetScopeImpl().AttachAnnot(*this, annot);
}
void CBioseq_EditHandle::SetInst_Hist(TInst_Hist& v) const
{
typedef CSet_SeqInstHist_EditCommand TCommand;
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new TCommand(*this, v));
// x_GetInfo().SetInst_Hist(v);
}
bool CBioseq_EditHandle::RemoveId(const CSeq_id_Handle& id) const
{
typedef CRemoveId_EditCommand TCommand;
CCommandProcessor processor(x_GetScopeImpl());
return processor.run(new TCommand(*this,id));
// return x_GetScopeInfo().RemoveId(id);
}
void CBioseq_EditHandle::AddSeq_descr(TDescr& v) const
{
typedef CAddDescr_EditCommand<CBioseq_EditHandle> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new TCommand(*this, v));
// x_GetInfo().AddSeq_descr(v);
}
CBioseq_EditHandle::TDescr& CBioseq_EditHandle::SetDescr(void) const
{
if (x_GetScopeImpl().IsTransactionActive()
|| GetTSE_Handle().x_GetTSE_Info().GetEditSaver() ) {
NCBI_THROW(CObjMgrException, eTransaction,
"TDescr& CBioseq_EditHandle::SetDescr(): "
"method can not be called if a transaction is required");
}
return x_GetInfo().SetDescr();
}
CSeq_annot_EditHandle
CSeq_entry_EditHandle::TakeAnnot(const CSeq_annot_EditHandle& annot) const
{
CRef<IScopeTransaction_Impl> tr(x_GetScopeImpl().CreateTransaction());
annot.Remove();
CSeq_annot_EditHandle handle = AttachAnnot(annot);
tr->Commit();
return handle;
// return x_GetScopeImpl().TakeAnnot(*this, annot);
}
void CBioseq_EditHandle::Remove(CBioseq_EditHandle::ERemoveMode mode) const
{
if (mode == eKeepSeq_entry)
x_Detach();
else {
CRef<IScopeTransaction_Impl> tr(x_GetScopeImpl().CreateTransaction());
CSeq_entry_EditHandle parent = GetParentEntry();
x_Detach();
parent.Remove();
tr->Commit();
}
}
CBioseq_Handle CTSE_Handle::GetBioseqHandle(const CSeq_id_Handle& id) const
{
return x_GetScopeImpl().GetBioseqHandleFromTSE(id, *this);
}
CRef<CSeqdesc> CBioseq_EditHandle::RemoveSeqdesc(const CSeqdesc& d) const
{
typedef CDesc_EditCommand<CBioseq_EditHandle,false> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
return processor.run(new TCommand(*this, d));
}
bool CBioseq_EditHandle::AddSeqdesc(CSeqdesc& d) const
{
typedef CDesc_EditCommand<CBioseq_EditHandle,true> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
return processor.run(new TCommand(*this, d));
}
void CBioseq_EditHandle::SetDescr(TDescr& v) const
{
typedef CSetValue_EditCommand<CBioseq_EditHandle,TDescr> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new TCommand(*this, v));
}
void CBioseq_EditHandle::ResetId(void) const
{
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new CResetIds_EditCommand(*this));
}
CBioseq_EditHandle CSeq_entry_EditHandle::SetSeq(void) const
{
return x_GetScopeImpl().GetBioseqHandle(x_GetInfo().SetSeq(),
GetTSE_Handle()).GetEditHandle();
}
CBioseq_EditHandle CBioseq_Handle::GetEditHandle(void) const
{
return x_GetScopeImpl().GetEditHandle(*this);
}
void CSeq_entry_EditHandle::AddDescr(TDescr& v) const
{
typedef CAddDescr_EditCommand<CSeq_entry_EditHandle> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new TCommand(*this, v));
}
void CSeq_entry_EditHandle::ResetDescr(void) const
{
typedef CResetValue_EditCommand<CSeq_entry_EditHandle,TDescr> TCommand;
CCommandProcessor processor(x_GetScopeImpl());
processor.run(new TCommand(*this));
}