bool CTestDiagApp::TestApp_Args(CArgDescriptions& args) { args.AddPositional("case_number", "case number", CArgDescriptions::eInteger); args.SetConstraint("case_number", new CArgAllow_Integers(1, 47)); return true; }
BEGIN_NCBI_SCOPE void CAVApp::Init(void) { // create command-line argument descriptions CArgDescriptions *argDescr = new CArgDescriptions(); // usage argDescr->SetUsageContext(GetArguments().GetProgramName(), "CDD Alignment Viewer"); // output type (required) argDescr->AddKey("type", "type", "one of: 'text' (unformatted), 'HTML', or 'FASTA'", argDescr->eString); argDescr->SetConstraint("type", (new CArgAllow_Strings())->Allow("text")->Allow("HTML")->Allow("FASTA")); // lowercase flag for FASTA argDescr->AddFlag("fasta_lc", "whether to show unaligned residues in lowercase in FASTA output"); // paragraph width (optional, default 60) argDescr->AddDefaultKey("width", "integer", "paragraph width", argDescr->eInteger, "60"); argDescr->SetConstraint("width", new CArgAllow_Integers(1, kMax_Int)); // conservation threshhold (optional, default 2.0) argDescr->AddDefaultKey("cons", "bits", "conservation threshhold (bit score)", argDescr->eDouble, "2.0"); argDescr->AddFlag("identity", "show identity, ignoring bit score"); // whether to output left/right tails argDescr->AddFlag("lefttails", "whether to show left tails"); argDescr->AddFlag("righttails", "whether to show right tails"); // whether to do condensed display argDescr->AddFlag("condensed", "condensed incompletely aligned columns (text/HTML only)"); // don't use colored backgrounds argDescr->AddFlag("no_color_bg", "don't use colored backgrounds for alignment paragraphs (HTML only)"); // ignore bad pairwise alignments argDescr->AddFlag("ignore_bad_aln", "ignore invalid pairwise alignments in input data"); // input file name (required) argDescr->AddPositional("in", "name of input file", argDescr->eString); SetupArgDescriptions(argDescr); }