void CHPFileWriter::WriteHeaders()
{
writer->WriteHeader();
DataGroupWriterIt beginGrp;
DataGroupWriterIt endGrp;
writer->GetDataGroupWriters(beginGrp, endGrp);
while(beginGrp != endGrp)
{
DataGroupWriter* dataGroupWriter = &(*beginGrp);
dataGroupWriter->WriteHeader();
DataSetWriterIt beginSet;
DataSetWriterIt endSet;
dataGroupWriter->GetDataSetWriters(beginSet, endSet);
while(beginSet != endSet)
{
dataSetWriter = &(*beginSet);
beginSet->WriteHeader();
SetFilePositions();
beginSet++;
}
dataGroupWriter->UpdateNextDataGroupPos();
beginGrp++;
}
}
void CelFileWriter::WriteHeaders()
{
writer->WriteHeader();
DataGroupWriter* dataGroupWriter = &writer->GetDataGroupWriter(0);
dataGroupWriter->WriteHeader();
DataSetWriterIt begin;
DataSetWriterIt end;
dataGroupWriter->GetDataSetWriters(begin, end);
while(begin != end)
{
dataSetWriter = &(*begin);
begin->WriteHeader();
SetFilePositions();
begin++;
}
}
void CHPQuantificationDetectionFileWriter::WriteHeaders()
{
writer->WriteHeader();
DataGroupWriter &dataGroupWriter = writer->GetDataGroupWriter(0);
dataGroupWriter.WriteHeader();
//int iSet=0;
DataSetWriterIt beginSet;
DataSetWriterIt endSet;
dataGroupWriter.GetDataSetWriters(beginSet, endSet);
if (beginSet != endSet)
{
dataSetWriter = &(*beginSet);
beginSet->WriteHeader();
entryPos = SetFilePositions();
dataGroupWriter.UpdateNextDataGroupPos();
}
}
void DataSetUpdaterTest::CreateReferenceFile()
{
// Create the data object.
GenericData data;
data.Header().SetFilename(TEST_FILE);
DataGroupHeader dgHdr(L"data");
DataSetHeader dsHdr;
dsHdr.SetName(L"test");
dsHdr.AddAsciiColumn(L"string8", 64);
dsHdr.AddUnicodeColumn(L"string16", 64);
dsHdr.AddByteColumn(L"int8");
dsHdr.AddShortColumn(L"int16");
dsHdr.AddIntColumn(L"int32");
dsHdr.AddUByteColumn(L"uint8");
dsHdr.AddUShortColumn(L"uint16");
dsHdr.AddUIntColumn(L"uint32");
dsHdr.AddFloatColumn(L"float");
dsHdr.SetRowCnt(3);
dgHdr.AddDataSetHdr(dsHdr);
data.Header().AddDataGroupHdr(dgHdr);
data.Header().GetGenericDataHdr()->SetFileTypeId("affymetrix.test.data");
// Write the data object to the file
GenericFileWriter writer(&data.Header());
writer.WriteHeader();
DataGroupWriter &dataGroupWriter = writer.GetDataGroupWriter(0);
dataGroupWriter.WriteHeader();
//int iSet=0;
DataSetWriterIt beginSet;
DataSetWriterIt endSet;
dataGroupWriter.GetDataSetWriters(beginSet, endSet);
beginSet->WriteHeader();
int32_t dataSetSz = beginSet->GetDataSetSize();
int32_t offset = writer.GetFilePos();
writer.SeekFromCurrentPos(dataSetSz + 1);
beginSet->UpdateNextDataSetOffset();
dataGroupWriter.UpdateNextDataGroupPos();
writer.SeekFromBeginPos(offset);
// Write the data.
beginSet->Write("first_row", 64);
beginSet->Write(L"first_row", 64);
beginSet->Write((int8_t) 1);
beginSet->Write((int16_t) 1);
beginSet->Write((int32_t) 1);
beginSet->Write((u_int8_t) 1);
beginSet->Write((u_int16_t) 1);
beginSet->Write((u_int32_t) 1);
beginSet->Write(1.0f);
beginSet->Write("second_row", 64);
beginSet->Write(L"second_row", 64);
beginSet->Write((int8_t) 2);
beginSet->Write((int16_t) 2);
beginSet->Write((int32_t) 2);
beginSet->Write((u_int8_t) 2);
beginSet->Write((u_int16_t) 2);
beginSet->Write((u_int32_t) 2);
beginSet->Write(2.0f);
beginSet->Write("third_row", 64);
beginSet->Write(L"third_row", 64);
beginSet->Write((int8_t) 3);
beginSet->Write((int16_t) 3);
beginSet->Write((int32_t) 3);
beginSet->Write((u_int8_t) 3);
beginSet->Write((u_int16_t) 3);
beginSet->Write((u_int32_t) 3);
beginSet->Write(3.0f);
}
