void convertLayoutToL2()
{
if (_doc == NULL || _doc->getModel() == NULL)
return;
layoutNsUri = "http://projects.eml.org/bcb/sbml/level2";
layoutNs = new LayoutPkgNamespaces(2, 1);
#ifdef LIBSBML_HAS_PACKAGE_RENDER
foundRenderElements = false;
renderNsUri = "http://projects.eml.org/bcb/sbml/render/level2";
renderNs = new RenderPkgNamespaces(2, 1);
#endif
LayoutModelPlugin* plugin
= (LayoutModelPlugin*)_doc->getModel()->getPlugin("layout");
if (plugin == NULL)
return;
ConversionProperties prop(new SBMLNamespaces(2, 4));
prop.addOption("strict", false);
prop.addOption("setLevelAndVersion", true);
prop.addOption("ignorePackages", true);
if (_doc->convert(prop) != LIBSBML_OPERATION_SUCCESS)
{
cout << "Conversion failed!" << endl;
_doc->printErrors();
exit(2);
}
plugin->setElementNamespace(layoutNsUri);
SBMLDocumentPlugin *docPlugin = (SBMLDocumentPlugin*)_doc->getPlugin("layout");
if (docPlugin != NULL)
docPlugin->setElementNamespace(layoutNsUri);
updateNs(plugin->getListOfLayouts());
_doc->getSBMLNamespaces()->removePackageNamespace(3, 1, "layout", 1);
#ifdef LIBSBML_HAS_PACKAGE_RENDER
SBMLDocumentPlugin *rdocPlugin = (SBMLDocumentPlugin*)_doc->getPlugin("render");
if (rdocPlugin!= NULL)
rdocPlugin->setElementNamespace(renderNsUri);
_doc->getSBMLNamespaces()->removePackageNamespace(3, 1, "render", 1);
#endif
}
void convertLayoutToL3()
{
if (_doc == NULL || _doc->getModel() == NULL)
return;
layoutNsUri = "http://www.sbml.org/sbml/level3/version1/layout/version1";
layoutNs = new LayoutPkgNamespaces(3, 1, 1);
#ifdef CONVERT_RENDER
renderNsUri = "http://www.sbml.org/sbml/level3/version1/render/version1";
renderNs = new RenderPkgNamespaces(3, 1, 1);
#endif
LayoutModelPlugin* plugin = (LayoutModelPlugin*)_doc->getModel()->getPlugin("layout");
if (plugin == NULL)
return;
ConversionProperties prop(new SBMLNamespaces(3, 1));
prop.addOption("strict", false);
prop.addOption("setLevelAndVersion", true);
prop.addOption("ignorePackages", true);
_doc->convert(prop);
plugin->setElementNamespace(layoutNsUri);
SBMLDocumentPlugin *docPlugin = (SBMLDocumentPlugin*)_doc->getPlugin("layout");
if (docPlugin != NULL)
docPlugin->setElementNamespace(layoutNsUri);
updateNs(plugin->getListOfLayouts());
_doc->getSBMLNamespaces()->addPackageNamespace("layout", 1);
_doc->setPackageRequired("layout", false);
#ifdef CONVERT_RENDER
SBMLDocumentPlugin *rdocPlugin = (SBMLDocumentPlugin*)_doc->getPlugin("render");
if (rdocPlugin != NULL)
rdocPlugin->setElementNamespace(renderNsUri);
_doc->getSBMLNamespaces()->addPackageNamespace("render", 1);
_doc->setPackageRequired("render", false);
#endif
}
bool
RenderExtension::isInUse(SBMLDocument *doc) const
{
if (doc == NULL || doc->getModel() == NULL) return false;
LayoutModelPlugin* plugin = (LayoutModelPlugin*)doc->getModel()->getPlugin("layout");
if (plugin == NULL || plugin->getNumLayouts() == 0) return false;
RenderListOfLayoutsPlugin* lolPlugin = (RenderListOfLayoutsPlugin*) plugin->getListOfLayouts()->getPlugin("render");
if (lolPlugin != NULL && lolPlugin->getNumGlobalRenderInformationObjects() > 0) return true;
for(int i = 0; i < plugin->getNumLayouts(); i++)
{
Layout* layout = plugin->getLayout(i);
RenderLayoutPlugin* rPlugin = (RenderLayoutPlugin*)layout->getPlugin("render");
if (rPlugin != NULL && rPlugin->getNumLocalRenderInformationObjects() > 0) return true;
}
return false;
}