void BasicSkewGenerator::DoStepForSkew(ShortStack &total_theory) {
UpdateSkewGenerator(total_theory);
UpdateSkewEstimates(total_theory);
total_theory.UpdateRelevantLikelihoods();
}
// run one sigma generator for each strand
void StrandedSigmaGenerator::DoStepForSigma(ShortStack &total_theory){
UpdateSigmaGenerator(total_theory);
UpdateSigmaEstimates(total_theory);
total_theory.UpdateRelevantLikelihoods();
}
void BasicBiasGenerator::ResetActiveBias(ShortStack &total_theory) {
total_theory.ResetRelevantResiduals();
UpdateResidualsFromBias(total_theory);
total_theory.UpdateRelevantLikelihoods();
}