void frameViewer(char* arg) {
//Take the arguments and save them into respective strings
std::string infileName;
std::string inF;
std::string inPrefix;
std::string runs, layers;
std::string runCount;
std::istringstream stm(arg);
inPrefix = "/home/p180f/Do_Jo_Ol_Ma/Analysis/MainProcedure/testMain/rawRoot/";
while (true) {
if (std::getline(stm, layers, ' ')) {
//load the input root files
TChain *chain = new TChain("fourChamTree");
for (int i=0; ; i++) {
runCount = std::to_string(i);
inF = "run" + runCount + "_" + layers + "layers.root";
infileName = inPrefix + inF;
ifstream fin;
fin.open(infileName.c_str());
if (!fin.fail()) {
fin.close();
chain->Add(infileName.c_str());
std::cout << "Got " << inF << std::endl;
} else break;
}
const int width=480; //width of the raw image
const int height=640; //height of the raw image
int x=-10; //x from file
int y=-10; //y from file
int intensity=-10; //pixle intensity from file
int pNum=0;//a counter of the order in which the frame was processed
//the 2d array which will store each frame of image data.
int frame[480][640]={0};
//variables
int UNIXtime=0;
float tdc[2]={-10,-10};
//TTree *T = new TTree("T","TTree of muplus data");
//add the 'branches' to the tree we will now read in
chain->SetBranchAddress("pNum",&pNum); //branch for the frame number
chain->SetBranchAddress("frame",&frame); //branch for frame data
TH2I *frameHisto = new TH2I("Single 4 Spark Event","",width,0,width,height,0,height); //histogram for the stacked images
TH1I *chamber1 = new TH1I("chamber1","Chamber 1",width,0,width);//histogram for chamber 1 (the top one)
TH1I *chamber2 = new TH1I("chamber2","Chamber 2",width,0,width);//histogram for chamber 2
TH1I *chamber3 = new TH1I("chamber3","Chamber 3",width,0,width);//histogram for chamber 3
TH1I *chamber4 = new TH1I("chamber4","Chamber 4",width,0,width);//histogram for chamber 4 (the bottom one)
TH1I *chamber1y = new TH1I("chamber1y","Chamber 1",height,0,height);//histogram for chamber 1 (the top one)
TH1I *chamber2y = new TH1I("chamber2y","Chamber 2",height,0,height);//histogram for chamber 2
TH1I *chamber3y = new TH1I("chamber3y","Chamber 3",height,0,height);//histogram for chamber 3
TH1I *chamber4y = new TH1I("chamber4y","Chamber 4",height,0,height);//histogram for chamber 4 (the bottom one)
//output the plot of the stacked images
TCanvas *fH2 = new TCanvas("fH2", "Single 4 Spark Event", 0, 0, 800, 800);
fH2->cd();
frameHisto->Draw();
frameHisto->GetXaxis()->SetTitle("X position (px)");
frameHisto->GetXaxis()->CenterTitle();
frameHisto->GetYaxis()->SetTitle("Intensity");
frameHisto->GetYaxis()->SetTitleOffset(1.4);
frameHisto->GetYaxis()->CenterTitle();
TCanvas *pc2 = new TCanvas("pc2","Frame",0,0,800,800);
pc2->Divide(2,2);
pc2->cd(1);
chamber1->Draw();
chamber1->GetXaxis()->SetTitle("X position (px)");
chamber1->GetXaxis()->CenterTitle();
chamber1->GetYaxis()->SetTitle("Intensity");
chamber1->GetYaxis()->SetTitleOffset(1.4);
chamber1->GetYaxis()->CenterTitle();
pc2->cd(2);
chamber2->Draw();
chamber2->GetXaxis()->SetTitle("X position (px)");
chamber2->GetXaxis()->CenterTitle();
chamber2->GetYaxis()->SetTitle("Intensity");
chamber2->GetYaxis()->SetTitleOffset(1.4);
chamber2->GetYaxis()->CenterTitle();
pc2->cd(3);
chamber3->Draw();
chamber3->GetXaxis()->SetTitle("X position (px)");
chamber3->GetXaxis()->CenterTitle();
chamber3->GetYaxis()->SetTitle("Intensity");
chamber3->GetYaxis()->SetTitleOffset(1.4);
chamber3->GetYaxis()->CenterTitle();
pc2->cd(4);
chamber4->Draw();
chamber4->GetXaxis()->SetTitle("X position (px)");
chamber4->GetXaxis()->CenterTitle();
chamber4->GetYaxis()->SetTitle("Intensity");
chamber4->GetYaxis()->SetTitleOffset(1.4);
chamber4->GetYaxis()->CenterTitle();
//TFile myF("trackTree.root","RECREATE");
//loop over all data in chain
Int_t nevent = chain->GetEntries(); //get the number of entries in the TChain
for (Int_t i=0;i<nevent;i++) {
chain->GetEntry(i);
//put the frame data into the histogram for this event
for(int x=0;x<width;x++){
for(int y=0;y<height;y++){
if(frame[x][y]>0){
frameHisto->Fill(x,y,frame[x][y]);
if(y>580 && y<610){
chamber1->Fill(x,frame[x][y]);
chamber1y->Fill(y,frame[x][y]);
}
else if(y>400 && y<440){
chamber2->Fill(x,frame[x][y]);
chamber2y->Fill(y,frame[x][y]);
}
else if(y>240 && y<280){
chamber3->Fill(x,frame[x][y]);
chamber3y->Fill(y,frame[x][y]);
}
else if(y>50 && y<100){
chamber4->Fill(x,frame[x][y]);
chamber4y->Fill(y,frame[x][y]);
}
}
}
}
double x12[2];
double y12[2];
double x34[2];
double y34[2];
x12[0] = chamber1->GetMean();
y12[0] = chamber1y->GetMean(); //593.3;
x12[1] = chamber2->GetMean();
y12[1] = chamber2y->GetMean(); //424.7;
x34[0] = chamber3->GetMean();
y34[0] = chamber3y->GetMean(); //262.5;
x34[1] = chamber4->GetMean();
y34[1] = chamber4y->GetMean(); //69.33;
cout << "Chamber1x: " << chamber1->GetMean() << endl;
cout << "Chamber1y: " << chamber1y->GetMean() << endl;
cout << "Chamber2x: " << chamber2->GetMean() << endl;
cout << "Chamber2y: " << chamber2y->GetMean() << endl;
cout << "Chamber3x: " << chamber3->GetMean() << endl;
cout << "Chamber3y: " << chamber3y->GetMean() << endl;
cout << "Chamber4x: " << chamber4->GetMean() << endl;
cout << "Chamber4y: " << chamber4y->GetMean() << endl;
pc2->cd(1);
chamber1->Draw();
gPad->Update();
pc2->cd(2);
chamber2->Draw();
gPad->Update();
pc2->cd(3);
chamber3->Draw();
gPad->Update();
pc2->cd(4);
chamber4->Draw();
gPad->Update();
fH2->cd();
frameHisto->Draw();
gPad->Update();
//wait for user input to advance to next event
cout << "Frame Number=" << pNum<<endl;
cout << "Press enter to advance to the next frame" << endl;
cin.ignore();
//clear the old frame from the histogram
frameHisto->Reset();
chamber1->Reset();
chamber2->Reset();
chamber3->Reset();
chamber4->Reset();
}
} else break;
}
}
int frameStack2_Mall(char* arg){
//Take the arguments and save them into respective strings
std::string infileName, outfileName0, outAllfileName0, outfileName1, outAllfileName1;
std::string inF, outF0, outF1, outAll0, outAll1;
std::string inPrefix, outPrefix;
std::string runs, layers;
std::string runCount;
std::istringstream stm(arg);
inPrefix = "/home/p180f/Do_Jo_Ol_Ma/Analysis/MainProcedure/testMain/rawRoot/";
outPrefix = "/home/p180f/Do_Jo_Ol_Ma/Analysis/MainProcedure/testMain/images/";
outAll0 = "sliceXCuts_allLayers.png";
outAllfileName0 = outPrefix + outAll0;
std::cout << outAll0 << " created\n";
outAll1 = "projYCuts_allLayers.png";
outAllfileName1 = outPrefix + outAll1;
std::cout << outAll1 << " created\n";
const int width=480; //width of the raw image
const int height=640; //height of the raw image
TH2I *frameHistoAll = new TH2I("frameHistoAll","Stacked Frames After Edge Cuts",width/4,0,width,height/4,0,height); //histogram for the stacked images
TH1I *chamber1All = new TH1I("chamber1All","Chamber 1 After Edge Cuts",width/4,0,width);//histogram for chamber 1 (the top one)
TH1I *chamber2All = new TH1I("chamber2All","Chamber 2 After Edge Cuts",width/4,0,width);//histogram for chamber 2
TH1I *chamber3All = new TH1I("chamber3All","Chamber 3 After Edge Cuts",width/4,0,width);//histogram for chamber 3
TH1I *chamber4All = new TH1I("chamber4All","Chamber 4 After Edge Cuts",width/4,0,width);//histogram for chamber 4 (the bottom one)
TCanvas *projCAll = new TCanvas("projCAll","",0,0,800,600);
TCanvas *pc2All = new TCanvas("pc2All", "Stack of 4 Layer Runs", 0, 0, 800, 600);
while (true) {
if (std::getline(stm, layers, ' ')) {
//create the output root file
outF0 = "sliceXCuts_" + layers + "layers.png";
outfileName0 = outPrefix + outF0;
std::cout << outF0 << " created\n";
outF1 = "projYCuts_" + layers + "layers.png";
outfileName1 = outPrefix + outF1;
std::cout << outF1 << " created\n";
//load the input root files
TChain *chain = new TChain("fourChamTree");
for (int i=0; ; i++) {
runCount = std::to_string(i);
inF = "run" + runCount + "_" + layers + "layers.root";
infileName = inPrefix + inF;
ifstream fin;
fin.open(infileName.c_str());
if (!fin.fail()) {
fin.close();
chain->Add(infileName.c_str());
std::cout << "Got " << inF << std::endl;
} else break;
}
int x=-10; //x from file
int y=-10; //y from file
int intensity=-10; //pixle intensity from file
int pNum=0;//the order in which the frame was processed
//the 2d array which will store each frame of image data.
int frame[480][640]={0};
//variables
int UNIXtime=0;
float tdc[2]={-10,-10};
//TTree *T = new TTree("T","TTree of muplus data");
//add the 'branches' to the tree we will now read in
chain->SetBranchAddress("pNum",&pNum); //branch for the frame number
chain->SetBranchAddress("frame",&frame); //branch for frame data
TH2I *frameHisto = new TH2I("frameHisto","Stacked Frames After Edge Cuts",width/4,0,width,height/4,0,height); //histogram for the stacked images
TH1I *chamber1 = new TH1I("chamber1","Chamber 1 After Edge Cuts",width/4,0,width);//histogram for chamber 1 (the top one)
TH1I *chamber2 = new TH1I("chamber2","Chamber 2 After Edge Cuts",width/4,0,width);//histogram for chamber 2
TH1I *chamber3 = new TH1I("chamber3","Chamber 3 After Edge Cuts",width/4,0,width);//histogram for chamber 3
TH1I *chamber4 = new TH1I("chamber4","Chamber 4 After Edge Cuts",width/4,0,width);//histogram for chamber 4 (the bottom one)
//loop over all data in chain
Int_t nevent = chain->GetEntries(); //get the number of entries in the TChain
for (Int_t i=0;i<nevent;i++) {
chain->GetEntry(i);
for(int x=0;x<width;x++){
for(int y=0;y<height;y++){
if(frame[x][y]>0){
frameHisto->Fill(x,y,frame[x][y]);
frameHistoAll->Fill(x,y,frame[x][y]);
if(y>580 && y<610){
chamber1->Fill(x,frame[x][y]);
chamber1All->Fill(x,frame[x][y]);
}
else if(y>400 && y<440){
chamber2->Fill(x,frame[x][y]);
chamber2All->Fill(x,frame[x][y]);
}
else if(y>240 && y<280){
chamber3->Fill(x,frame[x][y]);
chamber3All->Fill(x,frame[x][y]);
}
else if(y>50 && y<100){
chamber4->Fill(x,frame[x][y]);
chamber4All->Fill(x,frame[x][y]);
}
}
}
}
cout << "Stacking frame number " << pNum << "\r";//this overwrites the line every time
}
cout << endl;
//output the plot of the stacked images
TCanvas *pc2 = new TCanvas("pc2","Stacked Frames",0,0,600,800);
pc2->cd();
frameHisto->SetStats(false);
frameHisto->Draw("colz");
frameHisto->GetXaxis()->SetTitle("X position (px)");
//frameHisto->GetXaxis()->SetTitleSize(0.055);
//frameHisto->GetXaxis()->SetTitleOffset(1.0);
//frameHisto->GetXaxis()->SetLabelSize(0.055);
frameHisto->GetXaxis()->CenterTitle();
frameHisto->GetYaxis()->SetTitle("Y position (px)");
//frameHisto->GetYaxis()->SetTitleSize(0.055);
//frameHisto->GetYaxis()->SetTitleOffset(0.9);
//frameHisto->GetYaxis()->SetLabelSize(0.055);
frameHisto->GetYaxis()->CenterTitle();
gPad->Update();
// pc2->Print("chamberStack.png");//output to a graphics file
//plot the projection onto the Y axis (so we can find our cuts in Y to select each chamber)
TCanvas *projC = new TCanvas("projC","",0,0,800,600);
projC->cd();
TH1D *ydist = frameHisto->ProjectionY("ydist");
ydist->Draw();
ydist->GetYaxis()->SetTitle("Entries");
ydist->GetYaxis()->CenterTitle();
TCanvas *sliceX = new TCanvas("sliceX","",0,0,800,600);
sliceX->Divide(2,2);
sliceX->cd(1);
chamber1->Draw();
chamber1->GetXaxis()->SetTitle("X position (px)");
chamber1->GetXaxis()->CenterTitle();
chamber1->GetYaxis()->SetTitle("Y position (px)");
chamber1->GetYaxis()->CenterTitle();
// chamber1->GetYaxis()->SetMaxDigits(2);
sliceX->cd(2);
chamber2->Draw();
chamber2->GetXaxis()->SetTitle("X position (px)");
chamber2->GetXaxis()->CenterTitle();
chamber2->GetYaxis()->SetTitle("Y position (px)");
chamber2->GetYaxis()->CenterTitle();
// chamber2->GetYaxis()->SetMaxDigits(2);
sliceX->cd(3);
chamber3->Draw();
chamber3->GetXaxis()->SetTitle("X position (px)");
chamber3->GetXaxis()->CenterTitle();
chamber3->GetYaxis()->SetTitle("Y position (px)");
chamber3->GetYaxis()->CenterTitle();
// chamber3->GetYaxis()->SetMaxDigits(2);
sliceX->cd(4);
chamber4->Draw();
chamber4->GetXaxis()->SetTitle("X position (px)");
chamber4->GetXaxis()->CenterTitle();
chamber4->GetYaxis()->SetTitle("Y position (px)");
chamber4->GetYaxis()->CenterTitle();
// chamber4->GetYaxis()->SetMaxDigits(2);
gPad->Update();
projC->Print(outfileName1.c_str());
sliceX->Print(outfileName0.c_str());
frameHisto->Reset();
chamber1->Reset();
chamber2->Reset();
chamber3->Reset();
chamber4->Reset();
} else break;
}
projCAll->cd();
TH1D *ydistAll = frameHistoAll->ProjectionY("ydist");
ydistAll->Draw();
ydistAll->GetYaxis()->SetTitle("Entries");
ydistAll->GetYaxis()->CenterTitle();
TCanvas *sliceXAll = new TCanvas("sliceXAll","",0,0,800,600);
sliceXAll->Divide(2,2);
sliceXAll->cd(1);
chamber1All->Draw();
chamber1All->GetXaxis()->SetTitle("X position (px)");
chamber1All->GetXaxis()->CenterTitle();
chamber1All->GetYaxis()->SetTitle("Y position (px)");
chamber1All->GetYaxis()->CenterTitle();
// chamber1->GetYaxis()->SetMaxDigits(2);
sliceXAll->cd(2);
chamber2All->Draw();
chamber2All->GetXaxis()->SetTitle("X position (px)");
chamber2All->GetXaxis()->CenterTitle();
chamber2All->GetYaxis()->SetTitle("Y position (px)");
chamber2All->GetYaxis()->CenterTitle();
// chamber2->GetYaxis()->SetMaxDigits(2);
sliceXAll->cd(3);
chamber3All->Draw();
chamber3All->GetXaxis()->SetTitle("X position (px)");
chamber3All->GetXaxis()->CenterTitle();
chamber3All->GetYaxis()->SetTitle("Y position (px)");
chamber3All->GetYaxis()->CenterTitle();
// chamber3->GetYaxis()->SetMaxDigits(2);
sliceXAll->cd(4);
chamber4All->Draw();
chamber4All->GetXaxis()->SetTitle("X position (px)");
chamber4All->GetXaxis()->CenterTitle();
chamber4All->GetYaxis()->SetTitle("Y position (px)");
chamber4All->GetYaxis()->CenterTitle();
// chamber4->GetYaxis()->SetMaxDigits(2);
gPad->Update();
projCAll->Print(outAllfileName1.c_str());
sliceXAll->Print(outAllfileName0.c_str());
pc2All->cd();
frameHistoAll->SetStats(false);
frameHistoAll->Draw("colz");
frameHistoAll->GetXaxis()->SetTitle("X position (px)");
//frameHisto->GetXaxis()->SetTitleSize(0.055);
//frameHisto->GetXaxis()->SetTitleOffset(1.0);
//frameHisto->GetXaxis()->SetLabelSize(0.055);
frameHistoAll->GetXaxis()->CenterTitle();
frameHistoAll->GetYaxis()->SetTitle("Y position (px)");
//frameHisto->GetYaxis()->SetTitleSize(0.055);
//frameHisto->GetYaxis()->SetTitleOffset(0.9);
//frameHisto->GetYaxis()->SetLabelSize(0.055);
frameHistoAll->GetYaxis()->CenterTitle();
gPad->Update();
return 0;
}