void saveAtomTypes(const TypeVec &types)
{
for (TypeVec::const_iterator it = types.begin(); it != types.end(); ++it)
{
out << it->name << "\t" << it->count << endl;
}
}
AST_MATCHER_P(FunctionDecl, throws, internal::Matcher<Type>, InnerMatcher) {
TypeVec ExceptionList = throwsException(&Node);
auto NewEnd = llvm::remove_if(
ExceptionList, [this, Finder, Builder](const Type *Exception) {
return !InnerMatcher.matches(*Exception, Finder, Builder);
});
ExceptionList.erase(NewEnd, ExceptionList.end());
return ExceptionList.size();
}
void writeInteratomics(Atom *atoms, int numatoms, const double globalCutoff,
const TypeVec &types, double *spaceSize,
const SquareSelector<double> &coordCutoffs)
{
// iterate from numatoms to 1
BondMap bonds(types);
CoordinationHistogramData coords(types.size());
Bond *file;
size_t *count = new size_t[types.size()];
for (int i = numatoms - 1; i > 0; --i)
{
memset(count, '\0', sizeof(size_t) * types.size());
// iterate from j-1 to 0
for (int j = numatoms - 1; j >= 0; --j)
{
if (i == j)
{
continue;
}
double distance = getDistance(atoms[i], atoms[j], spaceSize);
if (distance <= globalCutoff)
{
file = bonds.getFile(atoms[i].type, atoms[j].type);
file->write(distance);
}
if (!coordCutoffs.empty()
&& distance <= coordCutoffs.select(atoms[i].type, atoms[j].type))
{
count[atoms[j].type] += 1;
}
}
if (!coordCutoffs.empty())
{
for (size_t j = 0; j < types.size(); ++j)
{
coords.addValue(atoms[i].type, j, count[j]);
}
}
}
if (!coordCutoffs.empty())
{
writeCoordination(coords, types);
}
delete[] count;
}
TypeVec getTypes()
{
TypeVec types;
// init types with predefined species (if any)
vector<string> species = strsplit(args.getCString("species"));
for (size_t i = 0; i < species.size(); ++i)
{
types.push_back(Type(species[i].c_str(), types.size()));
}
return types;
}
SquareSelector<double> getCoordCutoffs(const TypeVec &types)
{
vector<string> cutstrs = strsplit(args.getCString("coordinationCutoffs"));
if (cutstrs.size() != 0)
{
if (types.size() == 0)
{
cerr << "coordinationCutoffs: species not defined" << endl;
exit(1);
}
if (cutstrs.size() < types.size() * types.size())
{
cerr
<< "coordinationCutoffs: too few values. Must be number of species squared"
<< endl;
exit(1);
}
if (cutstrs.size() > types.size() * types.size())
{
cerr
<< "coordinationCutoffs: too many values. Must be number of species squared"
<< endl;
exit(1);
}
vector<double> cutoffs(cutstrs.size());
for (size_t i = 0; i < cutstrs.size(); ++i)
{
double value;
if (convert(cutstrs[i].c_str(), &value))
{
cerr << "coordinationCutoffs: invalid double value '"
<< cutstrs[i].c_str() << "'" << endl;
exit(1);
}
cutoffs[i] = value;
}
return SquareSelector<double>(cutoffs);
}
return SquareSelector<double>(vector<double>());
}
NNModule_(NNModule* o)
: o_(o),
context_(getGlobalContext()),
module_("NNModule", context_),
builder_(context_){
_mutex.lock();
if(!_initialized){
InitializeNativeTarget();
_initialized = true;
}
_mutex.unlock();
engine_ = EngineBuilder(&module_).setUseMCJIT(true).create();
TypeVec args;
args.push_back(doubleType());
createExtern("llvm.exp.f64", doubleType(), args);
}
static const TypeVec
throwsException(const FunctionDecl *Func,
llvm::SmallSet<const FunctionDecl *, 32> &CallStack) {
if (CallStack.count(Func))
return TypeVec();
if (const Stmt *Body = Func->getBody()) {
CallStack.insert(Func);
const TypeVec Result = throwsException(Body, TypeVec(), CallStack);
CallStack.erase(Func);
return Result;
}
TypeVec Result;
if (const auto *FPT = Func->getType()->getAs<FunctionProtoType>()) {
for (const QualType Ex : FPT->exceptions()) {
Result.push_back(Ex.getTypePtr());
}
}
return Result;
}
void writeCoordination(CoordinationHistogramData &coords, const TypeVec &types)
{
ofstream coordsfile("coords.txt");
for (size_t type1 = 0; type1 < types.size(); ++type1)
{
for (size_t type2 = 0; type2 < types.size(); ++type2)
{
coordsfile << types[type1].name.c_str() << "-"
<< types[type2].name.c_str() << "\t";
CoordinationHistogramData::Bins bins = coords.data[coords.getIndex(type1,
type2)];
for (CoordinationHistogramData::Bins::iterator it = bins.begin();
it != bins.end(); ++it)
{
coordsfile << *it << " ";
}
coordsfile << endl;
}
}
}
static const TypeVec
throwsException(const Stmt *St, const TypeVec &Caught,
llvm::SmallSet<const FunctionDecl *, 32> &CallStack) {
TypeVec Results;
if (!St)
return Results;
if (const auto *Throw = dyn_cast<CXXThrowExpr>(St)) {
if (const auto *ThrownExpr = Throw->getSubExpr()) {
const auto *ThrownType =
ThrownExpr->getType()->getUnqualifiedDesugaredType();
if (ThrownType->isReferenceType()) {
ThrownType = ThrownType->castAs<ReferenceType>()
->getPointeeType()
->getUnqualifiedDesugaredType();
}
if (const auto *TD = ThrownType->getAsTagDecl()) {
if (TD->getDeclName().isIdentifier() && TD->getName() == "bad_alloc"
&& TD->isInStdNamespace())
return Results;
}
Results.push_back(ThrownExpr->getType()->getUnqualifiedDesugaredType());
} else {
Results.append(Caught.begin(), Caught.end());
}
} else if (const auto *Try = dyn_cast<CXXTryStmt>(St)) {
TypeVec Uncaught = throwsException(Try->getTryBlock(), Caught, CallStack);
for (unsigned i = 0; i < Try->getNumHandlers(); ++i) {
const CXXCatchStmt *Catch = Try->getHandler(i);
if (!Catch->getExceptionDecl()) {
const TypeVec Rethrown =
throwsException(Catch->getHandlerBlock(), Uncaught, CallStack);
Results.append(Rethrown.begin(), Rethrown.end());
Uncaught.clear();
} else {
const auto *CaughtType =
Catch->getCaughtType()->getUnqualifiedDesugaredType();
if (CaughtType->isReferenceType()) {
CaughtType = CaughtType->castAs<ReferenceType>()
->getPointeeType()
->getUnqualifiedDesugaredType();
}
auto NewEnd =
llvm::remove_if(Uncaught, [&CaughtType](const Type *ThrownType) {
return ThrownType == CaughtType ||
isBaseOf(ThrownType, CaughtType);
});
if (NewEnd != Uncaught.end()) {
Uncaught.erase(NewEnd, Uncaught.end());
const TypeVec Rethrown = throwsException(
Catch->getHandlerBlock(), TypeVec(1, CaughtType), CallStack);
Results.append(Rethrown.begin(), Rethrown.end());
}
}
}
Results.append(Uncaught.begin(), Uncaught.end());
} else if (const auto *Call = dyn_cast<CallExpr>(St)) {
if (const FunctionDecl *Func = Call->getDirectCallee()) {
TypeVec Excs = throwsException(Func, CallStack);
Results.append(Excs.begin(), Excs.end());
}
} else {
for (const Stmt *Child : St->children()) {
TypeVec Excs = throwsException(Child, Caught, CallStack);
Results.append(Excs.begin(), Excs.end());
}
}
return Results;
}
void HLIRTask::setFunction(const HLIRFunction& func){
auto& b = module_->builder();
auto& c = module_->context();
(*this)["function"] = func;
TypeVec params = {module_->voidPtrTy};
auto funcType = FunctionType::get(module_->voidTy, params, false);
Function* wrapperFunc =
Function::Create(funcType,
llvm::Function::ExternalLinkage,
"hlir.task_wrapper",
module_->module());
auto aitr = wrapperFunc->arg_begin();
aitr->setName("args.ptr");
Value* argsVoidPtr = aitr++;
BasicBlock* entry = BasicBlock::Create(c, "entry", wrapperFunc);
b.SetInsertPoint(entry);
TypeVec fields;
fields.push_back(module_->voidPtrTy);
fields.push_back(module_->i32Ty);
fields.push_back(func->getReturnType());
for(auto pitr = func->arg_begin(), pitrEnd = func->arg_end();
pitr != pitrEnd; ++pitr){
fields.push_back(pitr->getType());
}
StructType* argsType = StructType::create(c, fields, "struct.func_args");
ValueVec args;
Value* argsPtr =
b.CreateBitCast(argsVoidPtr, PointerType::get(argsType, 0), "argsPtr");
size_t idx = 3;
for(auto pitr = func->arg_begin(), pitrEnd = func->arg_end();
pitr != pitrEnd; ++pitr){
Value* arg = b.CreateStructGEP(nullptr, argsPtr, idx, "arg.ptr");
arg = b.CreateLoad(arg, "arg");
args.push_back(arg);
++idx;
}
Value* ret = b.CreateCall(func, args, "ret");
Value* retPtr = b.CreateStructGEP(nullptr, argsPtr, 2, "retPtr");
b.CreateStore(ret, retPtr);
Function* releaseFunc =
module_->getFunction("__ares_task_release_future", {module_->voidPtrTy});
args = {argsVoidPtr};
b.CreateCall(releaseFunc, args);
b.CreateRetVoid();
(*this)["wrapperFunction"] = HLIRFunction(wrapperFunc);
}
void HLIRModule::lowerTask_(HLIRTask* task){
auto& b = builder();
auto& c = context();
DataLayout layout(module_);
Function* func = task->function();
Function* wrapperFunc = task->wrapperFunction();
for(auto itr = func->use_begin(), itrEnd = func->use_end();
itr != itrEnd; ++itr){
if(CallInst* ci = dyn_cast<CallInst>(itr->getUser())){
BasicBlock* parentBlock = ci->getParent();
Function* parentFunc = parentBlock->getParent();
if(parentFunc == wrapperFunc){
continue;
}
b.SetInsertPoint(ci);
TypeVec fields;
fields.push_back(voidPtrTy);
fields.push_back(i32Ty);
fields.push_back(func->getReturnType());
for(auto pitr = func->arg_begin(), pitrEnd = func->arg_end();
pitr != pitrEnd; ++pitr){
fields.push_back(pitr->getType());
}
StructType* argsType = StructType::create(c, fields, "struct.func_args");
size_t size = layout.getTypeAllocSize(argsType);
Function* allocFunc = getFunction("__ares_alloc", {i64Ty}, voidPtrTy);
ValueVec args = {ConstantInt::get(i64Ty, size)};
Value* argsVoidPtr = b.CreateCall(allocFunc, args, "args.void.ptr");
Value* argsPtr =
b.CreateBitCast(argsVoidPtr, PointerType::get(argsType, 0), "args.ptr");
Value* depth = b.CreateStructGEP(nullptr, argsPtr, 1, "depth.ptr");
depth = b.CreateLoad(depth, "depth");
size_t idx = 3;
for(auto& arg : ci->arg_operands()){
Value* argPtr = b.CreateStructGEP(nullptr, argsPtr, idx, "arg.ptr");
b.CreateStore(arg, argPtr);
++idx;
}
Function* queueFunc =
getFunction("__ares_task_queue", {voidPtrTy, voidPtrTy});
Value* funcVoidPtr = b.CreateBitCast(wrapperFunc, voidPtrTy, "funcVoidPtr");
args = {funcVoidPtr, argsVoidPtr};
b.CreateCall(queueFunc, args);
for(auto itr = ci->use_begin(), itrEnd = ci->use_end();
itr != itrEnd; ++itr){
if(Instruction* i = dyn_cast<Instruction>(itr->getUser())){
b.SetInsertPoint(i);
Function* awaitFunc =
getFunction("__ares_task_await_future", {voidPtrTy});
args = {argsVoidPtr};
b.CreateCall(awaitFunc, args);
Value* retPtr = b.CreateStructGEP(nullptr, argsPtr, 2, "retPtr");
Value* retVal = b.CreateLoad(retPtr, "retVal");
ci->replaceAllUsesWith(retVal);
break;
}
}
ci->eraseFromParent();
//parentFunc->dump();
}
}
}
static void DtoCreateNestedContextType(FuncDeclaration* fd) {
Logger::println("DtoCreateNestedContextType for %s", fd->toChars());
LOG_SCOPE
DtoDeclareFunction(fd);
if (fd->ir.irFunc->nestedContextCreated)
return;
fd->ir.irFunc->nestedContextCreated = true;
if (fd->nestedVars.empty()) {
// fill nestedVars
size_t nnest = fd->closureVars.dim;
for (size_t i = 0; i < nnest; ++i)
{
VarDeclaration* vd = static_cast<VarDeclaration*>(fd->closureVars.data[i]);
fd->nestedVars.insert(vd);
}
}
// construct nested variables array
if (!fd->nestedVars.empty())
{
Logger::println("has nested frame");
// start with adding all enclosing parent frames until a static parent is reached
LLStructType* innerFrameType = NULL;
unsigned depth = -1;
if (!fd->isStatic()) {
if (FuncDeclaration* parfd = getParentFunc(fd, true)) {
// Make sure the parent has already been analyzed.
DtoCreateNestedContextType(parfd);
innerFrameType = parfd->ir.irFunc->frameType;
if (innerFrameType)
depth = parfd->ir.irFunc->depth;
}
}
fd->ir.irFunc->depth = ++depth;
Logger::cout() << "Function " << fd->toChars() << " has depth " << depth << '\n';
typedef std::vector<LLType*> TypeVec;
TypeVec types;
if (depth != 0) {
assert(innerFrameType);
// Add frame pointer types for all but last frame
if (depth > 1) {
for (unsigned i = 0; i < (depth - 1); ++i) {
types.push_back(innerFrameType->getElementType(i));
}
}
// Add frame pointer type for last frame
types.push_back(LLPointerType::getUnqual(innerFrameType));
}
if (Logger::enabled() && depth != 0) {
Logger::println("Frame types: ");
LOG_SCOPE;
for (TypeVec::iterator i = types.begin(); i != types.end(); ++i)
Logger::cout() << **i << '\n';
}
// Add the direct nested variables of this function, and update their indices to match.
// TODO: optimize ordering for minimal space usage?
for (std::set<VarDeclaration*>::iterator i=fd->nestedVars.begin(); i!=fd->nestedVars.end(); ++i)
{
VarDeclaration* vd = *i;
if (!vd->ir.irLocal)
vd->ir.irLocal = new IrLocal(vd);
vd->ir.irLocal->nestedIndex = types.size();
vd->ir.irLocal->nestedDepth = depth;
if (vd->isParameter()) {
// Parameters will have storage associated with them (to handle byref etc.),
// so handle those cases specially by storing a pointer instead of a value.
const IrParameter* irparam = vd->ir.irParam;
const bool refout = vd->storage_class & (STCref | STCout);
const bool lazy = vd->storage_class & STClazy;
const bool byref = irparam->arg->byref;
const bool isVthisPtr = irparam->isVthis && !byref;
if (!(refout || (byref && !lazy)) || isVthisPtr) {
// This will be copied to the nesting frame.
if (lazy)
types.push_back(irparam->value->getType()->getContainedType(0));
else
types.push_back(DtoType(vd->type));
} else {
types.push_back(irparam->value->getType());
}
} else if (isSpecialRefVar(vd)) {
types.push_back(DtoType(vd->type->pointerTo()));
} else {
types.push_back(DtoType(vd->type));
}
if (Logger::enabled()) {
Logger::cout() << "Nested var '" << vd->toChars() <<
"' of type " << *types.back() << "\n";
}
}
LLStructType* frameType = LLStructType::create(gIR->context(), types,
std::string("nest.") + fd->toChars());
Logger::cout() << "frameType = " << *frameType << '\n';
// Store type in IrFunction
fd->ir.irFunc->frameType = frameType;
} else if (FuncDeclaration* parFunc = getParentFunc(fd, true)) {
// Propagate context arg properties if the context arg is passed on unmodified.
DtoCreateNestedContextType(parFunc);
fd->ir.irFunc->frameType = parFunc->ir.irFunc->frameType;
fd->ir.irFunc->depth = parFunc->ir.irFunc->depth;
}
}
bool compile(const nstr& name,
NNet& network,
size_t threads){
RunNetwork* runNetwork = new RunNetwork;
NNet::Layer* inputLayer = network.layer(0);
size_t numLayers = network.numLayers();
RunLayer* lastRunLayer = 0;
for(size_t l = 1; l < numLayers; ++l){
RunLayer* runLayer = new RunLayer;
runLayer->queue = new Queue(threads);
size_t inputLayerSize = inputLayer->size();
NNet::Layer* layer = network.layer(l);
size_t layerSize = layer->size();
if(l > 1){
runLayer->inputVecStart = lastRunLayer->outputVecStart;
runLayer->inputVec = lastRunLayer->outputVec;
}
if(l < numLayers - 1){
double* outputVecPtrStart;
double* outputVecPtr;
allocVector(layerSize, &outputVecPtrStart, &outputVecPtr);
runLayer->outputVecStart = outputVecPtrStart;
runLayer->outputVec = outputVecPtr;
}
TypeVec args;
args.push_back(getPointer(doubleVecType(inputLayerSize)));
args.push_back(getPointer(doubleVecType(inputLayerSize)));
args.push_back(getPointer(doubleType()));
args.push_back(int32Type());
FunctionType* ft = FunctionType::get(voidType(), args, false);
Function* f =
Function::Create(ft, Function::ExternalLinkage,
name.c_str(), &module_);
BasicBlock* entry = BasicBlock::Create(context_, "entry", f);
builder_.SetInsertPoint(entry);
auto aitr = f->arg_begin();
Value* inputVecPtr = aitr;
inputVecPtr->setName("input_vec_ptr");
++aitr;
Value* weightVecPtr = aitr;
weightVecPtr->setName("weight_vec_ptr");
++aitr;
Value* outputVecPtr = aitr;
outputVecPtr->setName("output_vec_ptr");
++aitr;
Value* outputIndex = aitr;
outputIndex->setName("output_index");
Value* inputVec =
builder_.CreateLoad(inputVecPtr, "input_vec");
Value* weightVec =
builder_.CreateLoad(weightVecPtr, "weight_vec");
Value* mulVec =
builder_.CreateFMul(inputVec, weightVec, "mul_vec");
Value* sumActivation =
builder_.CreateExtractElement(mulVec, getInt32(0), "sum_elem");
for(size_t i = 1; i < inputLayerSize; ++i){
Value* elem =
builder_.CreateExtractElement(mulVec, getInt32(i), "sum_elem");
sumActivation =
builder_.CreateFAdd(sumActivation, elem, "sum_activation");
}
Value* output =
getActivationOutput(layer->neuron(0), sumActivation);
Value* outputElement =
builder_.CreateGEP(outputVecPtr, outputIndex, "out_elem");
builder_.CreateStore(output, outputElement);
builder_.CreateRetVoid();
runLayer->f = f;
runLayer->fp = (void (*)(void*, void*, void*, int))
engine_->getPointerToFunction(f);
for(size_t j = 0; j < layerSize; ++j){
NNet::Neuron* nj = layer->neuron(j);
RunNeuron* runNeuron = new RunNeuron;
runNeuron->layer = runLayer;
runNeuron->outputIndex = j;
double* weightVecPtrStart;
double* weightVecPtr;
allocVector(inputLayerSize, &weightVecPtrStart, &weightVecPtr);
runNeuron->weightVecStart = weightVecPtrStart;
runNeuron->weightVec = weightVecPtr;
for(size_t i = 0; i < inputLayerSize; ++i){
NNet::Neuron* ni = inputLayer->neuron(i);
weightVecPtr[i] = nj->weight(ni);
}
runLayer->queue->add(runNeuron);
}
runNetwork->layerVec.push_back(runLayer);
inputLayer = layer;
lastRunLayer = runLayer;
}
networkMap_.insert(make_pair(name, runNetwork));
return true;
}