virtual void SetUp()
{
LOG_INIT("test.log", NULL, 0);
gr = factory.create_reader("DIMACS");
gr->read_graph("data/1dc.128.txt");
creator.set_file_name("data/1dc.128.txt");
creator.set_graph_type("DIMACS");
g = creator.create_graph();
}
int main(int argc, char **argv){
//usage check
if((argc == 1) ||
((argc == 2) && (strcmp(argv[1],"-h") == 0)) ||
((argc == 2) && (strcmp(argv[1], "--help") == 0))){
usage(argv[0]);
exit(-1);
}
Graph::Graph *g;
clock_t begin, end;
Graph::GraphProperties prop;
Graph::GraphReader ngr;
//create the graph object
g = new Graph::Graph();
//read the graph from the filename, assume it is an edgelist
ngr.read_graph(g, argv[1], "Edge", false);
//ngr.read_graph(g, argv[1], "ADJLIST", false);
printf("Read %d vertices and %d edges\n", g->get_num_nodes(), g->get_num_edges());
printf("Simplifying graph\n");
begin = clock();
prop.make_simple(g); //remove self loops and duplicate edges
end = clock();
printf("Time: %f\n", double(end - begin) / CLOCKS_PER_SEC);
//compute normalized expansion
begin = clock();
vector<double> norm_hops;
prop.expansion(g, norm_hops);
end = clock();
printf("Alg Time (expansion): %f\n", double(end - begin) / CLOCKS_PER_SEC);
} // main
int main(int argc, char **argv){
string infile;
string outfilename;
string outprefix;
string apspinputfilename;
string lcc_apspinputfilename;
ofstream outfile;
ofstream timing_file;
bool record_timings = false;
bool file_append = false;
bool run_largest_cc = true;
string intype ("edge");
std::map<string, bool> req_methods;
std::map<string, bool> val_methods;
ORB_t t1, t2;
int spectrum_spread = 0;
create_map(allowed_methods, val_methods);
parse_options(argc, argv, infile, intype, outfilename, outprefix, req_methods, record_timings, file_append, run_largest_cc, &spectrum_spread, apspinputfilename, lcc_apspinputfilename);
if(outfilename.length() == 0){
if(outprefix.length() != 0){
outfilename = outprefix + ".stats";
}
else {
outfilename = "graph-stats.txt";
}
}
if(outprefix.length() == 0){
outprefix = infile;
}
// we'd like higher precision when printing values
std::cout.precision(10);
#ifdef MPI_VERSION
MPI_Init(&argc, &argv);
int myrank;
MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
if(myrank == 0){
#endif
cout << "done parsing options" << endl;
cout << "Input file: " << infile << endl;
cout << "Input type: " << intype << endl;
cout << "Output file: " << outfilename << endl;
cout << "Appending : ";
cout << std::boolalpha << file_append << endl;
cout << "Methods :";
for(map<string, bool>::iterator it = req_methods.begin(); it != req_methods.end(); ++it){
cout << " " << it->first;
if(val_methods[it->first] != true){
cerr << "Error: " << it->first << " is not a valid method! " << endl;
}
}
cout << endl;
cout << "Calibrating timers" << endl;
#ifdef MPI_VERSION
} // main
#endif
ORB_calibrate();
// let's do some calculations
Graph::Graph *g = new(Graph::Graph);
Graph::GraphReader gr;
Graph::GraphProperties gp;
Graph::GraphUtil gu;
#ifdef MPI_VERSION
//int myrank;
//MPI_Comm_rank(MPI_COMM_WORLD, &myrank);
if(myrank == 0){
#endif
// Set up output streams
if(file_append == false){
outfile.open(outfilename.c_str());
}
else {
outfile.open(outfilename.c_str(), ios_base::out | ios_base::app);
}
if(!outfile.is_open()){
cerr << "Error opening " << outfilename << " for writing, exiting" << endl;
exit(1);
}
#ifdef MPI_VERSION
}
#endif
// Read in the graph and start recording things to output streams
cout << "Reading graph" << endl;
ORB_read(t1);
if(gr.read_graph(g, infile, intype, false) == -1){
exit(1);
}
ORB_read(t2);
if(outfile.tellp() == 0){
outfile << "filename " << infile << endl;
outfile << "input_num_nodes " << g->get_num_nodes() << endl;
outfile << "input_num_edges " << g->get_num_edges() << endl;
}
if(record_timings){
string of = outfilename + ".timings";
#ifdef MPI_VERSION
if(0 == myrank){
#endif
if(file_append == false){
timing_file.open(of.c_str());
}
else {
timing_file.open(of.c_str(), ios_base::out | ios_base::app);
}
if(!timing_file.is_open()){
cerr << "Error opening " << timing_file << " for writing, exiting" << endl;
exit(1);
}
if(false == file_append){
outfile << "timing_file " << of << endl;
}
#ifdef MPI_VERSION
}
#endif
}
print_time(timing_file, "Time(read_graph)", t1, t2);
if(apspinputfilename.length() != 0){
cout << "Reading APSP matrix from " << apspinputfilename << endl;
vector< vector<int> > *apsp_dists = new vector< vector<int> >;
ORB_read(t1);
read_apsp_matrix(apspinputfilename, *apsp_dists);
ORB_read(t2);
print_time(timing_file, "Time(read_apsp_matrix)", t1, t2);
g->set_shortest_path_dist(apsp_dists);
}
outfile.precision(16);
vector<int> components;
ORB_read(t1);
gu.label_all_components(g, &components);
ORB_read(t2);
print_time(timing_file, "Time(label_all_components)", t1, t2);
bool is_connected = gp.is_connected(g);
cout << "Connected components: " << g->get_num_connected_components() << endl;
//cout << "Graph is connected: " << std::boolalpha << is_connected << endl;
run_all_methods(g, outfile, timing_file, outprefix, req_methods, file_append, spectrum_spread);
outfile.close();
timing_file.close();
// some algorithms only make sense to run on a connected graph/component
if(not is_connected and run_largest_cc){ // run everything against the other algorithms
cout << "Graph is not connected, re-running stats on largest connected component" << endl;
outfilename = outprefix + ".largest_component.stats";
if(file_append == false){
outfile.open(outfilename.c_str());
}
else {
outfile.open(outfilename.c_str(), ios_base::out | ios_base::app);
}
if(!outfile.is_open()){
cerr << "Error opening " << outfilename << " for writing, exiting" << endl;
exit(1);
}
// get the largest component
Graph::Graph *largest_component = gu.get_largest_component_graph(g);
cerr << "Deleting g" << endl;
delete(g); // delete g here to save on memory
cerr << "g deleted" << endl;
if(outfile.tellp() == 0){
#ifdef MPI_VERSION
if(0 == myrank){
#endif
outfile << "largest_component_from " << infile << endl;
outfile << "input_num_nodes " << largest_component->get_num_nodes() << endl;
outfile << "input_num_edges " << largest_component->get_num_edges() << endl;
#ifdef MPI_VERSION
}
#endif
}
if(record_timings){
string of = outfilename + ".timings";
if(file_append == false){
timing_file.open(of.c_str());
#ifdef MPI_VERSION
if(0 == myrank){
#endif
outfile << "timing_file " << of << endl;
#ifdef MPI_VERSION
}
#endif
}
else {
timing_file.open(of.c_str(), ios_base::out | ios_base::app);
}
if(!timing_file.is_open()){
cerr << "Error opening " << timing_file << " for writing, exiting" << endl;
exit(1);
}
}
if(lcc_apspinputfilename.length() != 0){
cout << "Reading LCC APSP matrix from " << lcc_apspinputfilename << endl;
vector< vector<int> > *apsp_dists = new vector< vector<int> >;
ORB_read(t1);
read_apsp_matrix(lcc_apspinputfilename, *apsp_dists);
ORB_read(t2);
print_time(timing_file, "Time(read_apsp_matrix)", t1, t2);
largest_component->set_shortest_path_dist(apsp_dists);
}
outprefix = outprefix + ".largest_component";
outfile.precision(16);
cerr << "Running methods on largest component" << endl;
run_all_methods(largest_component, outfile, timing_file, outprefix, req_methods, file_append, spectrum_spread);
outfile.close();
timing_file.close();
}
#ifdef MPI_VERSION
MPI_Finalize();
#endif
exit(0);
} // main
virtual void SetUp(){
LOG_INIT("test.log", NULL, 0);
gr = new Graph::DIMACSGraphReader ();
gr->read_graph("../data/1dc.128.txt");
}
int main(int argc, char **argv){
#if !WIN32 & !CYGWIN
ORB_t t1, t2;
char *intype, *outtype, *infile, *outfile;
// Check for a cry for help
if((argc == 1) || ((argc == 2) && (strcmp(argv[1],"-h") == 0)) || ((argc == 2) && (strcmp(argv[1],"--help") == 0))
|| ((argc == 2) && (strcmp(argv[1],"--h") == 0) ) ){
usage(argv[0]);
exit(0);
}
if(argc != 5){
usage(argv[0]);
exit(1);
}
intype = argv[1];
outtype = argv[2];
infile = argv[3];
outfile = argv[4];
Graph::Graph *g;
int seed = 0;
cout << "calibrating timers\n";
ORB_calibrate();
if(!seed){
// Set the seed to a rand int in 0,2^24
seed = Graph::rand_int(0,0xffffff);
}
// Spin the RNG seed times
for(int ss = 0; ss < seed; ss++){
Graph::lcgrand(0);
}
Graph::GraphCreatorFile *gcf;
Graph::GraphProperties prop;
Graph::GraphReader ngr;
Graph::GraphWriter writer;
g = new Graph::Graph();
cout << "Input type : " << intype << endl;
cout << "Output type: " << outtype << endl;
cout << "Reading graph" << endl;
ORB_read(t1);
ngr.read_graph(g, infile, intype, false);
ORB_read(t2);
print_time("Time(read_graph)", t1, t2);
// if we don't get rid of duplicate edges, bad things happen
// when trying to output the graph
//prop.make_simple(g);
fprintf(stderr, "edges read in: %d nodes read in: %d\n", g->get_num_edges(), g->get_num_nodes());
cout << "Writing graph\n";
ORB_read(t1);
writer.write_graph(g, outfile, outtype);
ORB_read(t2);
print_time("Time(write_graph)", t1, t2);
return 0;
#else
fprintf(stderr,"Can't build under Cygwin or Windows\n");
return 1;
#endif
} // main