// ========================================================================
void process_elementblocks(Ioss::Region ®ion, stk::mesh::BulkData &bulk)
{
const Ioss::ElementBlockContainer& elem_blocks = region.get_element_blocks();
for(Ioss::ElementBlockContainer::const_iterator it = elem_blocks.begin();
it != elem_blocks.end(); ++it) {
Ioss::ElementBlock *entity = *it;
if (stk::io::include_entity(entity)) {
const std::string &name = entity->name();
const stk::mesh::MetaData& meta = stk::mesh::MetaData::get(bulk);
stk::mesh::Part* const part = meta.get_part(name);
STKIORequire(part != NULL);
const stk::topology topo = part->topology();
if (topo == stk::topology::INVALID_TOPOLOGY) {
std::ostringstream msg ;
msg << " INTERNAL_ERROR: Part " << part->name() << " returned INVALID from get_topology()";
throw std::runtime_error( msg.str() );
}
std::vector<int> elem_ids ;
std::vector<int> connectivity ;
entity->get_field_data("ids", elem_ids);
entity->get_field_data("connectivity", connectivity);
size_t element_count = elem_ids.size();
int nodes_per_elem = topo.num_nodes();
stk::mesh::EntityIdVector connectivity2(nodes_per_elem);
std::vector<int>::const_iterator connBegin = connectivity.begin();
std::vector<stk::mesh::Entity> elements(element_count);
for(size_t i=0; i<element_count; ++i, connBegin += nodes_per_elem) {
std::copy(connBegin, connBegin + nodes_per_elem, connectivity2.begin());
elements[i] = stk::mesh::declare_element(bulk, *part, elem_ids[i], connectivity2);
}
// For this example, we are just taking all attribute fields
// found on the io database and populating fields on the
// corresponding mesh part. In practice, would probably be
// selective about which attributes to use...
Ioss::NameList names;
entity->field_describe(Ioss::Field::ATTRIBUTE, &names);
for (Ioss::NameList::const_iterator I = names.begin(); I != names.end(); ++I) {
if (*I == "attribute" && names.size() > 1)
continue;
stk::mesh::FieldBase *field = meta.get_field<stk::mesh::FieldBase>(stk::topology::ELEMENT_RANK, *I);
stk::io::field_data_from_ioss(bulk, field, elements, entity, *I);
}
}
}
}
inline void checkFileForNodalVarNames(const std::string &exodusFilename, const std::vector<std::string>& nodalVarNames)
{
Ioss::DatabaseIO *iossDb = Ioss::IOFactory::create("exodus", exodusFilename, Ioss::READ_MODEL, MPI_COMM_WORLD);
Ioss::Region ioRegion(iossDb);
Ioss::NodeBlock *nodeBlockAssociatedWithField0 = ioRegion.get_node_blocks()[0];
Ioss::NameList fieldNames;
nodeBlockAssociatedWithField0->field_describe(Ioss::Field::TRANSIENT, &fieldNames);
ASSERT_EQ(nodalVarNames.size(), fieldNames.size());
for (size_t i=0;i<nodalVarNames.size();i++)
{
EXPECT_TRUE(nodeBlockAssociatedWithField0->field_exists(nodalVarNames[i])) << nodalVarNames[i];
}
}
void test_aliases(const Ioss::NameList &elements)
{
int count = elements.size();
OUTPUT << "\n\nTesting Element Topology Aliases...\n";
for (int i=0; i < count; i++) {
Ioss::ElementTopology *el_top = Ioss::ElementTopology::factory(elements[i]);
if (el_top->name() == elements[i]) {
OUTPUT << "Element: " << std::setw(20) << elements[i]
<< "(" << el_top->master_element_name() << ") has the following aliases:\n\t";
for (int j=0; j < count; j++) {
if (i != j && el_top->is_alias(elements[j])) {
OUTPUT << elements[j] << ", ";
}
}
OUTPUT << std::endl;
}
}
}