// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BoundaryPhaseWidget::extractStatsData(VoxelDataContainer::Pointer m, int index)
{
setPhaseIndex(index);
IDataArray* iDataPtr = NULL;
iDataPtr = m->getEnsembleData(DREAM3D::EnsembleData::CrystalStructures).get();
UInt32ArrayType* data = UInt32ArrayType::SafeObjectDownCast<IDataArray*, UInt32ArrayType*>(iDataPtr);
m_CrystalStructure = data->GetValue(index);
iDataPtr = m->getEnsembleData(DREAM3D::EnsembleData::PhaseTypes).get();
data = UInt32ArrayType::SafeObjectDownCast<IDataArray*, UInt32ArrayType*>(iDataPtr);
m_PhaseType = data->GetValue(index);
iDataPtr = m->getEnsembleData(DREAM3D::EnsembleData::Statistics).get();
StatsDataArray* statsDataArray = StatsDataArray::SafeObjectDownCast<IDataArray*, StatsDataArray*>(iDataPtr);
if (statsDataArray == NULL)
{
return;
}
StatsData::Pointer statsData = statsDataArray->getStatsData(index);
BoundaryStatsData* boundaryStatsData = BoundaryStatsData::SafePointerDownCast(statsData.get());
m_PhaseFraction = boundaryStatsData->getPhaseFraction();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void BoundaryPhaseWidget::extractStatsData(AttributeMatrix::Pointer attrMat, int index)
{
setPhaseIndex(index);
IDataArray::Pointer iDataArray = attrMat->getAttributeArray(DREAM3D::EnsembleData::CrystalStructures);
unsigned int* attributeArray = boost::dynamic_pointer_cast< UInt32ArrayType >(iDataArray)->getPointer(0);
m_CrystalStructure = attributeArray[index];
iDataArray = attrMat->getAttributeArray(DREAM3D::EnsembleData::PhaseTypes);
attributeArray = boost::dynamic_pointer_cast< UInt32ArrayType >(iDataArray)->getPointer(0);
m_PhaseType = attributeArray[index];
iDataArray = attrMat->getAttributeArray(DREAM3D::EnsembleData::Statistics);
StatsDataArray* statsDataArray = StatsDataArray::SafeObjectDownCast<IDataArray*, StatsDataArray*>(iDataArray.get());
if (statsDataArray == NULL)
{
return;
}
StatsData::Pointer statsData = statsDataArray->getStatsData(index);
BoundaryStatsData* boundaryStatsData = BoundaryStatsData::SafePointerDownCast(statsData.get());
m_PhaseFraction = boundaryStatsData->getPhaseFraction();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int BoundaryPhaseWidget::gatherStatsData(VoxelDataContainer::Pointer m)
{
if (m_PhaseIndex < 1)
{
QMessageBox::critical(this, tr("StatsGenerator"),
tr("The Phase Index is Less than 1. This is not allowed."),
QMessageBox::Default);
return -1;
}
int retErr = 0;
float calcPhaseFraction = m_PhaseFraction / m_TotalPhaseFraction;
typedef DataArray<unsigned int> XTalStructArrayType;
typedef DataArray<unsigned int> PhaseTypeArrayType;
typedef DataArray<unsigned int> ShapeTypeArrayType;
size_t ensembles = m->getNumEnsembleTuples();
// Get pointers
unsigned int* crystalStructures = m->getEnsembleDataSizeCheck<unsigned int, XTalStructArrayType, AbstractFilter>(DREAM3D::EnsembleData::CrystalStructures, ensembles, 1, NULL);
unsigned int* phaseTypes = m->getEnsembleDataSizeCheck<unsigned int, PhaseTypeArrayType, AbstractFilter>(DREAM3D::EnsembleData::PhaseTypes, ensembles, 1, NULL);
//unsigned int* shapeTypes = m->getEnsembleDataSizeCheck<unsigned int, ShapeTypeArrayType, AbstractFilter>(DREAM3D::EnsembleData::ShapeTypes, ensembles*1, NULL);
crystalStructures[m_PhaseIndex] = m_CrystalStructure;
phaseTypes[m_PhaseIndex] = m_PhaseType;
StatsDataArray* statsDataArray = StatsDataArray::SafeObjectDownCast<IDataArray*, StatsDataArray*>(m->getEnsembleData(DREAM3D::EnsembleData::Statistics).get());
StatsData::Pointer statsData = statsDataArray->getStatsData(m_PhaseIndex);
BoundaryStatsData* boundaryStatsData = BoundaryStatsData::SafePointerDownCast(statsData.get());
boundaryStatsData->setPhaseFraction(calcPhaseFraction);
return retErr;
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
int BoundaryPhaseWidget::gatherStatsData(AttributeMatrix::Pointer attrMat)
{
if (m_PhaseIndex < 1)
{
QMessageBox::critical(this, tr("StatsGenerator"),
tr("The Phase Index is Less than 1. This is not allowed."),
QMessageBox::Default);
return -1;
}
int retErr = 0;
float calcPhaseFraction = m_PhaseFraction / m_TotalPhaseFraction;
//size_t ensembles = attrMat->getNumTuples();
// Get pointers
IDataArray::Pointer iDataArray = attrMat->getAttributeArray(DREAM3D::EnsembleData::CrystalStructures);
unsigned int* crystalStructures = boost::dynamic_pointer_cast< UInt32ArrayType >(iDataArray)->getPointer(0);
iDataArray = attrMat->getAttributeArray(DREAM3D::EnsembleData::PhaseTypes);
unsigned int* phaseTypes = boost::dynamic_pointer_cast< UInt32ArrayType >(iDataArray)->getPointer(0);
crystalStructures[m_PhaseIndex] = m_CrystalStructure;
phaseTypes[m_PhaseIndex] = m_PhaseType;
StatsDataArray* statsDataArray = StatsDataArray::SafeObjectDownCast<IDataArray*, StatsDataArray*>(attrMat->getAttributeArray(DREAM3D::EnsembleData::Statistics).get());
if (NULL != statsDataArray)
{
StatsData::Pointer statsData = statsDataArray->getStatsData(m_PhaseIndex);
BoundaryStatsData* boundaryStatsData = BoundaryStatsData::SafePointerDownCast(statsData.get());
boundaryStatsData->setPhaseFraction(calcPhaseFraction);
}
return retErr;
}
void fitData(IDataArray::Pointer inDataPtr, float* ensembleArray, int32_t* eIds, size_t numEnsembles, uint32_t dType, bool removeBiasedFeatures, bool* biasedFeatures)
{
typename DataArray<T>::Pointer inputDataPtr = std::dynamic_pointer_cast<DataArray<T> >(inDataPtr);
StatsData::Pointer sData = StatsData::New();
std::vector<DistributionAnalysisOps::Pointer> distributionAnalysis;
distributionAnalysis.push_back(BetaOps::New());
distributionAnalysis.push_back(LogNormalOps::New());
distributionAnalysis.push_back(PowerLawOps::New());
QString distType;
int32_t numComp = 1;
// Determining number of components and name given distribution type
if (dType == SIMPL::DistributionType::Beta) { distType = "Beta", numComp = SIMPL::DistributionType::BetaColumnCount; }
else if (dType == SIMPL::DistributionType::LogNormal) { distType = "LogNormal", numComp = SIMPL::DistributionType::LogNormalColumnCount; }
else if (dType == SIMPL::DistributionType::Power) { distType = "PowerLaw", numComp = SIMPL::DistributionType::PowerLawColumnCount; }
T* fPtr = inputDataPtr->getPointer(0);
std::vector<FloatArrayType::Pointer> dist;
std::vector<std::vector<float > > values;
size_t numfeatures = inputDataPtr->getNumberOfTuples();
dist.resize(numEnsembles);
values.resize(numEnsembles);
for(size_t i = 1; i < numEnsembles; i++)
{
dist[i] = sData->CreateDistributionArrays(dType);
}
int32_t ensemble = 0;
for (size_t i = 1; i < numfeatures; i++)
{
if (removeBiasedFeatures == false || biasedFeatures[i] == false)
{
ensemble = eIds[i];
values[ensemble].push_back(static_cast<float>(fPtr[i]));
}
}
for (size_t i = 1; i < numEnsembles; i++)
{
distributionAnalysis[dType]->calculateParameters(values[i], dist[i]);
for (int32_t j = 0; j < numComp; j++)
{
FloatArrayType::Pointer data = dist[i];
ensembleArray[numComp * i + j] = data->getValue(j);
}
}
}