static rc_t ref_walker_init( struct ref_walker * self )
{
rc_t rc = KDirectoryNativeDir( &self->dir );
if ( rc == 0 )
rc = VDBManagerMakeRead ( &self->vmgr, self->dir );
if ( rc == 0 )
rc = VDBManagerMakeSRASchema( self->vmgr, &self->vschema );
if ( rc == 0 )
rc = AlignMgrMakeRead ( &self->amgr );
if ( rc == 0 )
rc = VFSManagerMake ( &self->vfs_mgr );
if ( rc == 0 )
rc = VNamelistMake ( &self->sources, 10 );
self->cb_block.data = self;
self->cb_block.destroy = NULL;
self->cb_block.populate = populate_data;
self->cb_block.alloc_size = alloc_size;
self->cb_block.fixed_size = 0;
BSTreeInit( &self->regions );
self->primary_alignments = true;
if ( rc != 0 )
ref_walker_release( self );
return rc;
}
rc_t make_trans_ctx( trans_ctx * ctx, trans_opt * opt, bool open_reference )
{
rc_t rc = AlignMgrMakeRead ( &ctx->almgr );
if ( rc != 0 )
LOGERR( klogInt, rc, "AlignMgrMake() failed" );
if ( rc == 0 )
{
rc = KDirectoryNativeDir( &ctx->dir );
if ( rc != 0 )
LOGERR( klogInt, rc, "KDirectoryNativeDir() failed" );
}
if ( rc == 0 )
{
rc = VDBManagerMakeRead ( &ctx->vdb_mgr, ctx->dir );
if ( rc != 0 )
LOGERR( klogInt, rc, "VDBManagerMakeRead() failed" );
}
if ( rc == 0 )
{
if ( opt->fname != NULL )
{
rc = VDBManagerOpenDBRead ( ctx->vdb_mgr, &ctx->db, NULL, "%s", opt->fname );
if ( rc != 0 )
LOGERR( klogInt, rc, "VDBManagerOpenDBRead() failed" );
}
else
rc = RC ( rcApp, rcArgv, rcAccessing, rcParam, rcNull );
}
if ( rc == 0 )
{
rc = ReferenceList_MakeDatabase( &ctx->ref_list, ctx->db,
ereferencelist_4na |
ereferencelist_usePrimaryIds,
0, NULL, 0 );
if ( rc != 0 )
LOGERR( klogInt, rc, "ReferenceList_MakeDatabase() failed" );
}
if ( rc == 0 && open_reference )
{
OUTMSG(( "looking for reference '%s'\n", opt->ref_name ));
rc = ReferenceList_Find( ctx->ref_list, &ctx->ref_obj, opt->ref_name, string_size( opt->ref_name ) );
if ( rc != 0 )
LOGERR( klogInt, rc, "ReferenceList_Find() failed" );
}
return rc;
}
