Int2 LIBCALLBACK VSMGenericTextAsnOpen ( Pointer data )
{
Char filename[255];
Pointer ptr = NULL;
Uint2 entityID, datatype;
Int2 retval = OM_MSG_RET_ERROR;
OMProcControlPtr ompcp;
ompcp = (OMProcControlPtr)data;
filename[0] = '\0';
if (GetInputFileName(filename, (size_t)254, NULL, NULL))
{
WatchCursor();
ptr = ObjMgrGenericAsnTextFileRead (filename, &datatype, &entityID);
ArrowCursor();
if (ptr == NULL) goto erret;
ompcp->output_data = ptr;
ompcp->output_entityID = entityID;
PromoteToSeqEntry (entityID, datatype, ptr);
retval = OM_MSG_RET_DONE;
}
else
retval = OM_MSG_RET_OK;
ret:
return retval;
erret:
goto ret;
}
ofstream GetValidWriteFile()
{
ofstream file;
bool fileValid = false;
do
{
// get a file name from the user
string fileName = GetInputFileName();
//open the file
file.open(fileName.c_str());
//test the state of the stream to verify that the file name is valid
if (file.bad() || file.fail())
{
//close the file, TODO is this needed?
file.close();
//Give the user the option to quit or try again
BadFileNameChoice();
}
else
{
//if the file is valid and open, set fileValid to true.
return file;
fileValid = true;
}
} while (!fileValid);
return file;
}
static void DOT_OpenBrowse2Proc(ButtoN b)
{
DOTStartDataPtr sdata=NULL;
Char path[PATH_MAX]={""};
sdata = (DOTStartDataPtr) GetObjectExtra (b);
if (sdata==NULL) return;
if (GetInputFileName (path, sizeof(path), NULL, NULL)){
SetTitle(sdata->id2, path);
}
}
static Int2 LIBCALLBACK VSMGenericFastaOpen ( Boolean is_na )
{
Char filename[255];
FILE * fp;
SeqEntryPtr sep;
filename[0] = '\0';
if (GetInputFileName(filename, (size_t)254, NULL, NULL))
{
WatchCursor();
fp = FileOpen(filename, "r");
while ((sep = FastaToSeqEntry(fp, is_na)) != NULL)
ObjMgrRegister(OBJ_SEQENTRY, (Pointer)sep);
FileClose(fp);
ArrowCursor();
}
return OM_MSG_RET_DONE;
}
static void ReadFileProc (ButtoN b)
{
XOSPtr xosp;
Char filename[PATH_MAX];
if ((xosp = (XOSPtr) GetObjectExtra (b)) != NULL)
{
if (!GetInputFileName (filename, PATH_MAX, "", "TEXT"))
{
ErrPostEx (SEV_ERROR, TOP_ERROR, 101, "Could not read directory");
ErrShow ();
}
else
{
MemFree (xosp->filename);
xosp->filename = StringSave (filename);
xosp->gi = 0;
}
}
return;
}
int main() {
for (int testNumber = 3; testNumber <= 120; ++testNumber) {
std::cout << testNumber << std::endl;
const std::string inputFileName = GetInputFileName(testNumber);
const std::string outputFileName = GetOutputFileName(testNumber);
std::cout << " " << inputFileName << " " << outputFileName << std::endl;
std::string s, t;
if (testNumber & 1) {
s = GetRandString();
t = GetRandString();
} else {
t = GetRandString();
int n = t.length();
int l = GetRandIntInRange(1, n);
int r = GetRandIntInRange(1, n);
if (l > r) {
std::swap(l, r);
}
s = t.substr(l, r - l + 1);
}
std::ofstream inputFile(inputFileName);
inputFile << s << std::endl;
inputFile << t << std::endl;
inputFile.close();
std::ofstream outputFile(outputFileName);
outputFile << GetOccurrences(s, t) << std::endl;
outputFile.close();
}
return 0;
}
Int2 LIBCALLBACK VSMGenericBinAsnOpen ( Pointer data )
{
Char filename[255];
AsnIoPtr aip;
Pointer ptr;
Uint2 entityID;
Int2 ct, i, retval = OM_MSG_RET_OK;
ObjMgrPtr omp;
ObjMgrTypePtr omtp = NULL;
OMProcControlPtr ompcp;
WindoW w;
GrouP g;
ButtoN b;
VSMReadBinStr vrb;
VSeqMgrPtr vsmp;
ompcp = (OMProcControlPtr)data;
vsmp = VSeqMgrGet();
omp = vsmp->omp;
filename[0] = '\0';
if (GetInputFileName(filename, (size_t)254, NULL, NULL))
{
vrb.do_it = FALSE;
vrb.window_done = FALSE;
vrb.the_type = 0;
w = ModalWindow (-50, -33, -10, -10, NULL);
SetWindowExtra(w, &vrb, NULL);
g = HiddenGroup(w, 0, 2, NULL);
StaticPrompt(g, "Select ASN.1 type:", 0,0,systemFont,'l');
vrb.p = PopupList(g, TRUE, NULL);
i = 0;
ct = 0;
omtp = NULL;
while ((omtp = ObjMgrTypeFindNext(omp, omtp)) != NULL)
{
if (omtp->asnname != NULL)
{
i++;
PopupItem(vrb.p, omtp->asnname);
if (! StringCmp(vsmp->lastASNtype, omtp->asnname))
ct = i;
}
}
if (! i)
{
ErrPostEx(SEV_ERROR,0,0, "No ASN.1 types are registered");
Remove(w);
return OM_MSG_RET_ERROR;
}
if (! ct)
ct = 1;
SetValue(vrb.p, ct);
g = HiddenGroup(w, 2, 0, NULL);
DefaultButton(g, "Accept", AsnBinAcceptProc);
b = PushButton(g, "Cancel", AsnBinCancelProc);
Show(w);
Nlm_WaitForCondition (! vrb.window_done);
ProcessAnEvent();
if (! vrb.do_it)
return retval;
i = 0;
omtp = NULL;
while ((omtp = ObjMgrTypeFindNext(omp, omtp)) != NULL)
{
i++;
if (i == vrb.the_type)
break;
}
if (omtp == NULL)
{
ErrPostEx(SEV_ERROR,0,0,"Couldn't find vrb.the_type");
return OM_MSG_RET_ERROR;
}
StringMove(vsmp->lastASNtype, omtp->asnname);
WatchCursor();
aip = AsnIoOpen(filename, "rb");
ptr = (*(omtp->asnread))(aip, NULL);
AsnIoClose(aip);
if (ptr == NULL)
{
ErrPostEx(SEV_ERROR,0,0,"Couldn't read [%s], type [%s]", filename, omtp->asnname);
retval = OM_MSG_RET_ERROR;
}
else
{
entityID = ObjMgrRegister(omtp->datatype, ptr);
ompcp->output_data = ptr;
ompcp->output_entityID = entityID;
PromoteToSeqEntry (entityID, omtp->datatype, ptr);
retval = OM_MSG_RET_DONE;
}
ArrowCursor();
}
else
retval = OM_MSG_RET_OK;
return retval;
}
