END_TEST
START_TEST (test_Reaction_getProductById)
{
SpeciesReference_t *sr1 = SpeciesReference_create(2, 4);
SpeciesReference_setSpecies(sr1, "P1");
SpeciesReference_t *sr2 = SpeciesReference_create(2, 4);
SpeciesReference_setSpecies(sr2, "P1");
Reaction_addProduct(R, sr1);
Reaction_addProduct(R, sr2);
fail_unless( Reaction_getNumReactants(R) == 0 );
fail_unless( Reaction_getNumProducts (R) == 2 );
fail_unless( Reaction_getNumModifiers(R) == 0 );
fail_unless( Reaction_getProductBySpecies(R, "P1") != sr1 );
fail_unless( Reaction_getProductBySpecies(R, "P2") != sr2 );
fail_unless( Reaction_getProductBySpecies(R, "P3") == NULL );
SpeciesReference_free(sr1);
SpeciesReference_free(sr2);
}
END_TEST
START_TEST (test_Reaction_getModifier)
{
SpeciesReference_t *msr1 = SpeciesReference_createModifier(2, 4);
SpeciesReference_t *msr2 = SpeciesReference_createModifier(2, 4);
SpeciesReference_setSpecies(msr1, "M1");
SpeciesReference_setSpecies(msr2, "M2");
Reaction_addModifier(R, msr1);
Reaction_addModifier(R, msr2);
SpeciesReference_free(msr1);
SpeciesReference_free(msr2);
fail_unless( Reaction_getNumReactants(R) == 0 );
fail_unless( Reaction_getNumProducts (R) == 0 );
fail_unless( Reaction_getNumModifiers(R) == 2 );
msr1 = Reaction_getModifier(R, 0);
msr2 = Reaction_getModifier(R, 1);
fail_unless(!strcmp(SpeciesReference_getSpecies(msr1), "M1"));
fail_unless(!strcmp(SpeciesReference_getSpecies(msr2), "M2"));
}
END_TEST
START_TEST (test_Reaction_addModifier1)
{
Reaction_t *m = Reaction_create(2, 2);
SpeciesReference_t *p
= SpeciesReference_createModifier(2, 2);
SpeciesReference_t *p1
= SpeciesReference_createModifier(2, 2);
SpeciesReference_setSpecies(p1, "k");
SpeciesReference_setId(p1, "k1");
int i = Reaction_addModifier(m, p);
fail_unless( i == LIBSBML_INVALID_OBJECT);
SpeciesReference_setSpecies(p, "k");
SpeciesReference_setId(p, "k1");
i = Reaction_addModifier(m, p);
fail_unless( i == LIBSBML_OPERATION_SUCCESS);
fail_unless( Reaction_getNumModifiers(m) == 1);
i = Reaction_addModifier(m, p1);
fail_unless( i == LIBSBML_DUPLICATE_OBJECT_ID);
fail_unless( Reaction_getNumModifiers(m) == 1);
SpeciesReference_free(p);
SpeciesReference_free(p1);
Reaction_free(m);
}
END_TEST
START_TEST (test_Reaction_getModifierById)
{
SpeciesReference_t *msr1 = SpeciesReference_createModifier(2, 4);
SpeciesReference_t *msr2 = SpeciesReference_createModifier(2, 4);
SpeciesReference_setSpecies(msr1, "M1");
SpeciesReference_setSpecies(msr2, "M2");
Reaction_addModifier(R, msr1);
Reaction_addModifier(R, msr2);
fail_unless( Reaction_getNumReactants(R) == 0 );
fail_unless( Reaction_getNumProducts (R) == 0 );
fail_unless( Reaction_getNumModifiers(R) == 2 );
fail_unless( Reaction_getModifierBySpecies(R, "M1") != msr1 );
fail_unless( Reaction_getModifierBySpecies(R, "M2") != msr2 );
fail_unless( Reaction_getModifierBySpecies(R, "M3") == NULL );
SpeciesReference_free(msr1);
SpeciesReference_free(msr2);
}
END_TEST
START_TEST (test_Reaction_getProduct)
{
SpeciesReference_t *sr1 = SpeciesReference_create(2, 4);
SpeciesReference_t *sr2 = SpeciesReference_create(2, 4);
SpeciesReference_setSpecies(sr1, "P1");
SpeciesReference_setSpecies(sr2, "P2");
Reaction_addProduct(R, sr1);
Reaction_addProduct(R, sr2);
SpeciesReference_free(sr1);
SpeciesReference_free(sr2);
fail_unless( Reaction_getNumReactants(R) == 0 );
fail_unless( Reaction_getNumProducts (R) == 2 );
fail_unless( Reaction_getNumModifiers(R) == 0 );
sr1 = Reaction_getProduct(R, 0);
sr2 = Reaction_getProduct(R, 1);
fail_unless( !strcmp(SpeciesReference_getSpecies(sr1), "P1") );
fail_unless( !strcmp(SpeciesReference_getSpecies(sr2), "P2") );
}
END_TEST
START_TEST (test_L3_SpeciesReference_free_NULL)
{
SpeciesReference_free(NULL);
}
END_TEST
START_TEST (test_ModifierSpeciesReference_free_NULL)
{
SpeciesReference_free(NULL);
}
END_TEST
START_TEST (test_SpeciesReference_createWithNS )
{
XMLNamespaces_t *xmlns = XMLNamespaces_create();
XMLNamespaces_add(xmlns, "http://www.sbml.org", "testsbml");
SBMLNamespaces_t *sbmlns = SBMLNamespaces_create(2,1);
SBMLNamespaces_addNamespaces(sbmlns,xmlns);
SpeciesReference_t *object =
SpeciesReference_createWithNS (sbmlns);
fail_unless( SBase_getTypeCode ((SBase_t *) object) == SBML_SPECIES_REFERENCE );
fail_unless( SBase_getMetaId ((SBase_t *) object) == NULL );
fail_unless( SBase_getNotes ((SBase_t *) object) == NULL );
fail_unless( SBase_getAnnotation((SBase_t *) object) == NULL );
fail_unless( SBase_getLevel ((SBase_t *) object) == 2 );
fail_unless( SBase_getVersion ((SBase_t *) object) == 1 );
fail_unless( SpeciesReference_getNamespaces (object) != NULL );
fail_unless( XMLNamespaces_getLength(
SpeciesReference_getNamespaces(object)) == 2 );
SpeciesReference_free(object);
}
END_TEST
START_TEST (test_SpeciesReference_setStoichiometryMath5)
{
SpeciesReference_t *sr1 =
SpeciesReference_create(1, 2);
StoichiometryMath_t * sm = StoichiometryMath_create(2, 4);
ASTNode_t *math = ASTNode_createWithType(AST_TIMES);
ASTNode_t *a = ASTNode_create();
ASTNode_t *b = ASTNode_create();
ASTNode_setName(a, "a");
ASTNode_setName(b, "b");
ASTNode_addChild(math, a);
ASTNode_addChild(math, b);
StoichiometryMath_setMath(sm, math);
int i = SpeciesReference_setStoichiometryMath(sr1, sm);
fail_unless( i == LIBSBML_UNEXPECTED_ATTRIBUTE);
fail_unless( !SpeciesReference_isSetStoichiometryMath(sr1) );
StoichiometryMath_free(sm);
SpeciesReference_free(sr1);
}
END_TEST
START_TEST (test_Reaction_removeModifier)
{
SpeciesReference_t *o1, *o2, *o3;
o1 = Reaction_createModifier(R);
o2 = Reaction_createModifier(R);
o3 = Reaction_createModifier(R);
SpeciesReference_setSpecies(o3, "test");
fail_unless( Reaction_removeModifier(R, 0) == o1 );
fail_unless( Reaction_getNumModifiers(R) == 2 );
fail_unless( Reaction_removeModifier(R, 0) == o2 );
fail_unless( Reaction_getNumModifiers(R) == 1 );
fail_unless( Reaction_removeModifierBySpecies(R,"test") == o3 );
fail_unless( Reaction_getNumModifiers(R) == 0 );
SpeciesReference_free(o1);
SpeciesReference_free(o2);
SpeciesReference_free(o3);
}
END_TEST
START_TEST (test_SpeciesReference_setDenominator2)
{
SpeciesReference_t *c =
SpeciesReference_create(2, 2);
int i = SpeciesReference_setDenominator(c, 4);
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( SpeciesReference_getDenominator(c) == 4 );
SpeciesReference_free(c);
}
END_TEST
START_TEST (test_SpeciesReference_setName3)
{
SpeciesReference_t *c =
SpeciesReference_create(2, 1);
int i = SpeciesReference_setName(c, "cell");
fail_unless( i == LIBSBML_UNEXPECTED_ATTRIBUTE );
fail_unless( !SpeciesReference_isSetName(c) );
SpeciesReference_free(c);
}
END_TEST
START_TEST (test_SpeciesReference_setSpecies2)
{
SpeciesReference_t *c =
SpeciesReference_create(2, 2);
int i = SpeciesReference_setSpecies(c, "1cell");
fail_unless( i == LIBSBML_INVALID_ATTRIBUTE_VALUE );
fail_unless( !SpeciesReference_isSetSpecies(c) );
SpeciesReference_free(c);
}
END_TEST
START_TEST (test_Reaction_addModifier)
{
SpeciesReference_t * msr = SpeciesReference_createModifier(2, 4);
SpeciesReference_setSpecies(msr, "s");
Reaction_addModifier(R, msr);
fail_unless( Reaction_getNumReactants(R) == 0 );
fail_unless( Reaction_getNumProducts (R) == 0 );
fail_unless( Reaction_getNumModifiers(R) == 1 );
SpeciesReference_free(msr);
}
END_TEST
START_TEST (test_SpeciesReference_setStoichiometry2)
{
SpeciesReference_t *c =
SpeciesReference_create(2, 2);
int i = SpeciesReference_setStoichiometry(c, 4);
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( SpeciesReference_getStoichiometry(c) == 4.0 );
SpeciesReference_free(c);
}
END_TEST
START_TEST (test_SpeciesReference_setSpecies3)
{
SpeciesReference_t *c =
SpeciesReference_create(2, 2);
int i = SpeciesReference_setSpecies(c, "mole");
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( !strcmp(SpeciesReference_getSpecies(c), "mole") );
fail_unless( SpeciesReference_isSetSpecies(c) );
SpeciesReference_free(c);
}
END_TEST
START_TEST (test_Reaction_addProduct3)
{
Reaction_t *m = Reaction_create(2, 2);
SpeciesReference_t *p
= SpeciesReference_create(1, 2);
SpeciesReference_setSpecies(p, "k");
int i = Reaction_addProduct(m, p);
fail_unless( i == LIBSBML_LEVEL_MISMATCH);
fail_unless( Reaction_getNumProducts(m) == 0);
SpeciesReference_free(p);
Reaction_free(m);
}
END_TEST
START_TEST (test_Reaction_addModifier2)
{
Reaction_t *m = Reaction_create(2, 2);
SpeciesReference_t *p
= SpeciesReference_createModifier(2, 1);
SpeciesReference_setSpecies(p, "k");
int i = Reaction_addModifier(m, p);
fail_unless( i == LIBSBML_VERSION_MISMATCH);
fail_unless( Reaction_getNumModifiers(m) == 0);
SpeciesReference_free(p);
Reaction_free(m);
}
END_TEST
START_TEST (test_L3_SpeciesReference_hasRequiredAttributes )
{
SpeciesReference_t *sr = SpeciesReference_create (3, 1);
fail_unless ( !SpeciesReference_hasRequiredAttributes(sr));
SpeciesReference_setSpecies(sr, "id");
fail_unless ( !SpeciesReference_hasRequiredAttributes(sr));
SpeciesReference_setConstant(sr, 0);
fail_unless ( SpeciesReference_hasRequiredAttributes(sr));
SpeciesReference_free(sr);
}
END_TEST
START_TEST (test_L3_SpeciesReference_createWithNS )
{
XMLNamespaces_t *xmlns = XMLNamespaces_create();
XMLNamespaces_add(xmlns, "http://www.sbml.org", "testsbml");
SBMLNamespaces_t *sbmlns = SBMLNamespaces_create(3,1);
SBMLNamespaces_addNamespaces(sbmlns,xmlns);
SpeciesReference_t *sr =
SpeciesReference_createWithNS (sbmlns);
fail_unless( SBase_getTypeCode ((SBase_t *) sr) == SBML_SPECIES_REFERENCE );
fail_unless( SBase_getMetaId ((SBase_t *) sr) == NULL );
fail_unless( SBase_getNotes ((SBase_t *) sr) == NULL );
fail_unless( SBase_getAnnotation((SBase_t *) sr) == NULL );
fail_unless( SBase_getLevel ((SBase_t *) sr) == 3 );
fail_unless( SBase_getVersion ((SBase_t *) sr) == 1 );
fail_unless( SpeciesReference_getNamespaces (sr) != NULL );
fail_unless( XMLNamespaces_getLength(SpeciesReference_getNamespaces(sr)) == 2 );
fail_unless( SpeciesReference_getId (sr) == NULL );
fail_unless( SpeciesReference_getName (sr) == NULL );
fail_unless( SpeciesReference_getSpecies (sr) == NULL );
fail_unless( util_isNaN(SpeciesReference_getStoichiometry (sr)) );
fail_unless( SpeciesReference_getConstant(sr) == 0 );
fail_unless( !SpeciesReference_isSetId (sr) );
fail_unless( !SpeciesReference_isSetName (sr) );
fail_unless( !SpeciesReference_isSetSpecies (sr) );
fail_unless( !SpeciesReference_isSetStoichiometry (sr) );
fail_unless( !SpeciesReference_isSetConstant(sr) );
SpeciesReference_free(sr);
XMLNamespaces_free(xmlns);
SBMLNamespaces_free(sbmlns);
}
END_TEST
//START_TEST (test_SpeciesReference_createWith)
//{
// SpeciesReference_t *sr = SpeciesReference_createWithSpeciesAndStoichiometry("s3", 4, 2);
//
//
// fail_unless( SBase_getTypeCode ((SBase_t *) sr) == SBML_SPECIES_REFERENCE );
// fail_unless( SBase_getMetaId ((SBase_t *) sr) == NULL );
// fail_unless( SBase_getNotes ((SBase_t *) sr) == NULL );
// fail_unless( SBase_getAnnotation((SBase_t *) sr) == NULL );
//
// fail_unless( !strcmp(SpeciesReference_getSpecies(sr), "s3") );
//
// fail_unless( SpeciesReference_getStoichiometry(sr) == 4 );
// fail_unless( SpeciesReference_getDenominator (sr) == 2 );
//
// fail_unless( SpeciesReference_isSetSpecies(sr) );
//
// SpeciesReference_free(sr);
//}
//END_TEST
START_TEST (test_SpeciesReference_createModifier)
{
SpeciesReference_t *sr =
SpeciesReference_createModifier(2, 4);
fail_unless( SBase_getTypeCode ((SBase_t *) sr) == SBML_MODIFIER_SPECIES_REFERENCE );
fail_unless( SBase_getMetaId ((SBase_t *) sr) == NULL );
fail_unless( SBase_getNotes ((SBase_t *) sr) == NULL );
fail_unless( SBase_getAnnotation((SBase_t *) sr) == NULL );
fail_unless( SpeciesReference_isModifier(sr));
SpeciesReference_free(sr);
}
END_TEST
START_TEST (test_SpeciesReference_setId3)
{
SpeciesReference_t *c =
SpeciesReference_create(2, 1);
int i = SpeciesReference_setId(c, "cell");
/* this is going to give different results dependenet on whether
* layout is enabled but the test code
*/
#ifdef USE_LAYOUT
fail_unless( i == LIBSBML_OPERATION_SUCCESS );
fail_unless( SpeciesReference_isSetId(c) );
#else
fail_unless( i == LIBSBML_UNEXPECTED_ATTRIBUTE );
fail_unless( !SpeciesReference_isSetId(c) );
#endif
SpeciesReference_free(c);
}
void
L3SpeciesReferenceTest_teardown (void)
{
SpeciesReference_free(SR);
}
void
SpeciesReferenceTest1_teardown (void)
{
SpeciesReference_free(sr);
}
void
ModifierSpeciesReferenceTest_teardown (void)
{
SpeciesReference_free(MSR);
}
