Float SphereDistanceToSingletonScore::evaluate_index(
Model *m, ParticleIndex pi,
DerivativeAccumulator *da) const {
Float v = internal::evaluate_distance_pair_score(
XYZR(m, pi), StaticD(pt_), da, f_.get(),
boost::lambda::_1 - XYZR(m, pi).get_radius());
IMP_LOG_VERBOSE("SphereDistanceTo from " << XYZR(m, pi) << " to " << pt_
<< " scored " << v << std::endl);
return v;
}
void XYZRMovedSingletonContainer::do_reset_all() {
IMP_OBJECT_LOG;
backup_.clear();
moved_.clear();
// backup_.resize(get_singleton_container()->get_number_of_particles());
IMP_CONTAINER_FOREACH(SingletonContainer, get_singleton_container(),
{ backup_.push_back(XYZR(get_model(), _1).get_sphere()); });
display::Geometries RigidBodyHierarchyGeometry::get_components() const {
display::Geometries ret;
algebra::Sphere3D s = h_->get_sphere(node_);
IMP_NEW(display::SphereGeometry, sg, (s));
std::ostringstream oss;
oss << h_->get_name() << " " << layer_;
sg->set_name(oss.str());
if (h_->get_is_leaf(node_)) {
for (unsigned int i = 0; i < h_->get_number_of_particles(node_); ++i) {
ret.push_back(
new XYZRGeometry(XYZR(h_->get_model(), h_->get_particle(node_, i))));
}
} else {
for (unsigned int i = 0; i < h_->get_number_of_children(node_); ++i) {
ret.push_back(new RigidBodyHierarchyGeometry(h_, h_->get_child(node_, i),
layer_ + 1));
}
}
return ret;
}
