boolean dataentry_add_ThreeStateDB(DataEntry * de,ThreeStateScore * tss,ThreeStateDB * mdb)
{
switch(mdb->dbtype) {
case TSMDB_SINGLE :
de->name = stringalloc(mdb->single->name);
return TRUE;
case TSMDB_HMMER1PFAM :
if( tss == NULL ) {
} else {
de->name = stringalloc(tss->name);
}
return TRUE;
case TSMDB_PROTEIN :
add_SequenceDB_info_DataEntry(mdb->sdb,de);
return TRUE;
case TSMDB_GENERIC :
if( (*mdb->dataentry_add)(mdb,de) == FALSE ) {
warn("Could not add dataentry info to the entry %s",tss->name);
return FALSE;
} else {
return TRUE;
}
default :
warn("Unknown threestatedb type");
return FALSE;
}
return TRUE;
}
boolean dataentry_add_GenomicDB(DataEntry * de,ComplexSequence * cs,GenomicDB * gendb)
{
de->name = stringalloc(cs->seq->name);
de->is_reversed = is_reversed_Sequence(cs->seq);
if( gendb->is_single_seq ) {
return TRUE;
}
add_SequenceDB_info_DataEntry(gendb->sdb,de);
return TRUE;
}
boolean dataentry_add_cDNADB(DataEntry * de,ComplexSequence * cs,cDNADB * cdnadb)
{
if( cs == NULL || cs->seq == NULL ) {
warn("Adding a dataentry with a NULL complex sequence or null internal sequence. Nope!");
return FALSE;
}
if( cdnadb->is_single_seq == FALSE)
add_SequenceDB_info_DataEntry(cdnadb->sdb,de);
de->name = stringalloc(cs->seq->name);
de->is_reversed = is_reversed_Sequence(cs->seq);
return TRUE;
}
