void setBorkedFlux(EBFluxFAB& a_flux,
const EBISBox& a_ebisBox,
const Box& a_box,
const RealVect& a_fluxVal,
const BaseFab<int>& a_map)
{
for (int idir = 0; idir < SpaceDim; idir++)
{
Real bogval = 0;
//the bogus value will be zero so it will not
//do to have the correct value be zero
if (Abs(a_fluxVal[idir]) < 1.0e-3) bogval = 1.0;
a_flux[idir].setVal(a_fluxVal[idir]);
//if i am in a 1d box and the box next to me
//is 2d, set the border flux to
for (SideIterator sit; sit.ok(); ++sit)
{
Box borderBox;
if (sit() == Side::Lo)
{
borderBox = adjCellLo(a_box, idir, -1);
}
else
{
borderBox = adjCellHi(a_box, idir, -1);
}
for (BoxIterator bit(borderBox); bit.ok(); ++bit)
{
const IntVect& thisIV = bit();
IntVect thatIV = thisIV + sign(sit())*BASISV(idir);
if ((a_map(thisIV, 0) == 1) && (a_map(thatIV, 0) == 2))
{
Vector<FaceIndex> faces = a_ebisBox.getAllFaces(thisIV, idir, sit());
for (int iface = 0; iface < faces.size(); iface++)
{
a_flux[idir](faces[iface],0) = bogval;
}
}
}
}
}
}
void
CFStencil::define(
const ProblemDomain& a_fineDomain,
const Box& a_grid,
const Vector<Box>& a_periodicVector,
int a_refRatio,
int a_direction,
Side::LoHiSide a_hiorlo)
{
m_isDefined = true;
CH_assert(a_refRatio >= 1);
CH_assert(a_direction >= 0);
CH_assert(a_direction < SpaceDim);
CH_assert((a_hiorlo == Side::Lo) ||
(a_hiorlo == Side::Hi));
CH_assert(!a_fineDomain.isEmpty());
//set internal vars. most of these are kept around
//just to keep the class from having an identity crisis.
m_direction = a_direction;
m_hiorlo = a_hiorlo;
Box finebox = a_grid;
//compute intvectset of all points on fine grid that
//need to be interpolated
//shift direction
int hilo = sign(a_hiorlo);
//create fine stencil
Box edgebox;
CH_assert((hilo ==1) || (hilo == -1));
if (hilo == -1)
{
edgebox = adjCellLo(finebox,m_direction,1);
}
else
{
edgebox = adjCellHi(finebox,m_direction,1);
}
edgebox = a_fineDomain & edgebox;
if (edgebox.isEmpty()) return;
int w1 = edgebox.smallEnd()[0];
int w2 = edgebox.bigEnd()[0];
m_fineIVS.define(edgebox);
// moving window loop in i-direction (bvs)
for (int i=0; i<a_periodicVector.size(); ++i)
{
const Box& b = a_periodicVector[i];
if (b.bigEnd()[0] >= w1)
{
m_fineIVS -= b;
if (b.smallEnd()[0] > w2)
{
i=a_periodicVector.size();
}
}
}
//ivs where all coarse slopes are defined
//== coarsened fine ivs
m_coarIVS.define(m_fineIVS);
m_coarIVS.coarsen(a_refRatio);
// this is a trick to get around the lack of a IntVectSet intersection
// operator which works with a ProblemDomain
ProblemDomain coardom= coarsen(a_fineDomain, a_refRatio);
Box domainIntersectBox = m_coarIVS.minBox();
domainIntersectBox = coardom & domainIntersectBox;
m_coarIVS &= domainIntersectBox;
m_packedBox = m_fineIVS.minBox();
if (m_fineIVS.numPts() == m_packedBox.numPts())
{
m_isPacked = true;
}
else
{
m_isPacked = false;
m_packedBox = Box();
}
}
void
CFStencil::define(
const ProblemDomain& a_fineDomain,
const Box& a_grid,
const DisjointBoxLayout& a_fineBoxes,
const DisjointBoxLayout& a_coarBoxes,
int a_refRatio,
int a_direction,
Side::LoHiSide a_hiorlo)
{
m_isDefined = true;
CH_assert(a_refRatio >= 1);
CH_assert(a_direction >= 0);
CH_assert(a_direction < SpaceDim);
CH_assert((a_hiorlo == Side::Lo) ||
(a_hiorlo == Side::Hi));
CH_assert(!a_fineDomain.isEmpty());
//set internal vars. most of these are kept around
//just to keep the class from having an identity crisis.
m_direction = a_direction;
m_hiorlo = a_hiorlo;
Box finebox = a_grid;
//compute intvectset of all points on fine grid that
//need to be interpolated
//shift direction
int hilo = sign(a_hiorlo);
//create fine stencil
Box edgebox;
CH_assert((hilo ==1) || (hilo == -1));
if (hilo == -1)
{
edgebox = adjCellLo(finebox,m_direction,1);
}
else
{
edgebox = adjCellHi(finebox,m_direction,1);
}
edgebox = a_fineDomain & edgebox;
if (!edgebox.isEmpty())
{
Box periodicTestBox(a_fineDomain.domainBox());
if (a_fineDomain.isPeriodic())
{
for (int idir=0; idir<SpaceDim; idir++)
{
if (a_fineDomain.isPeriodic(idir))
{
periodicTestBox.grow(idir,-1);
}
}
}
m_fineIVS.define(edgebox);
LayoutIterator lit = a_fineBoxes.layoutIterator();
for (lit.reset(); lit.ok(); ++lit)
{
m_fineIVS -= a_fineBoxes[lit()];
// if periodic, also need to subtract periodic images
// only do this IF we're periodic _and_ both boxes
// adjoin the domain box boundary somewhere
if (a_fineDomain.isPeriodic() && !periodicTestBox.contains(edgebox)
&& !periodicTestBox.contains(a_fineBoxes[lit()]))
{
ShiftIterator shiftIt = a_fineDomain.shiftIterator();
IntVect shiftMult(a_fineDomain.domainBox().size());
Box shiftedBox(a_fineBoxes[lit()]);
for (shiftIt.begin(); shiftIt.ok(); ++shiftIt)
{
IntVect shiftVect = shiftMult*shiftIt();
shiftedBox.shift(shiftVect);
m_fineIVS -= shiftedBox;
shiftedBox.shift(-shiftVect);
} // end loop over periodic shift directions
} // end if periodic
}
}
//ivs where all coarse slopes are defined
//== coarsened fine ivs
m_coarIVS.define(m_fineIVS);
m_coarIVS.coarsen(a_refRatio);
// this is a trick to get around the lack of a IntVectSet intersection
// operator which works with a ProblemDomain
ProblemDomain coardom= coarsen(a_fineDomain, a_refRatio);
Box domainIntersectBox = m_coarIVS.minBox();
domainIntersectBox = coardom & domainIntersectBox;
m_coarIVS &= domainIntersectBox;
m_packedBox = m_fineIVS.minBox();
if (m_fineIVS.numPts() == m_packedBox.numPts())
{
m_isPacked = true;
}
else
{
m_isPacked = false;
m_packedBox = Box();
}
}
void
MappedLevelFluxRegister::define(const DisjointBoxLayout& a_dbl,
const DisjointBoxLayout& a_dblCoarse,
const ProblemDomain& a_dProblem,
const IntVect& a_nRefine,
int a_nComp,
bool a_scaleFineFluxes)
{
CH_TIME("MappedLevelFluxRegister::define");
m_isDefined = FluxRegDefined; // Basically, define was called
m_nRefine = a_nRefine;
m_scaleFineFluxes = a_scaleFineFluxes;
DisjointBoxLayout coarsenedFine;
coarsen(coarsenedFine, a_dbl, a_nRefine);
#ifndef DISABLE_TEMPORARY_FLUX_REGISTER_OPTIMIZATION
// This doesn't work for multi-block calculations, which are
// not properly nested. -JNJ
//begin temporary optimization. bvs
int numPts = 0;
for (LayoutIterator lit = a_dblCoarse.layoutIterator(); lit.ok(); ++lit) {
numPts += a_dblCoarse[lit].numPts();
}
for (LayoutIterator lit = coarsenedFine.layoutIterator(); lit.ok(); ++lit) {
numPts -= coarsenedFine[lit].numPts();
}
if (numPts == 0) {
m_coarFlux.clear();
// OK, fine region completely covers coarse region. no registers.
return;
}
#endif
//end temporary optimization. bvs
m_coarFlux.define( a_dblCoarse, a_nComp);
m_isDefined |= FluxRegCoarseDefined;
m_domain = a_dProblem;
ProblemDomain coarsenedDomain;
coarsen(coarsenedDomain, a_dProblem, a_nRefine);
m_fineFlux.define( coarsenedFine, a_nComp, IntVect::Unit);
m_isDefined |= FluxRegFineDefined;
m_reverseCopier.ghostDefine(coarsenedFine, a_dblCoarse,
coarsenedDomain, IntVect::Unit);
for (int i = 0; i < CH_SPACEDIM; i++) {
m_coarseLocations[i].define(a_dblCoarse);
m_coarseLocations[i + CH_SPACEDIM].define(a_dblCoarse);
}
DataIterator dC = a_dblCoarse.dataIterator();
LayoutIterator dF = coarsenedFine.layoutIterator();
for (dC.begin(); dC.ok(); ++dC) {
const Box& cBox = a_dblCoarse.get(dC);
for (dF.begin(); dF.ok(); ++dF) {
const Box& fBox = coarsenedFine.get(dF);
if (fBox.bigEnd(0) + 1 < cBox.smallEnd(0)) {
//can skip this box since they cannot intersect, due to sorting
} else if (fBox.smallEnd(0) - 1 > cBox.bigEnd(0)) {
//skip to end, since all the rest of boxes will not intersect either
dF.end();
} else {
for (int i = 0; i < CH_SPACEDIM; i++) {
Vector<Box>& lo = m_coarseLocations[i][dC];
Vector<Box>& hi = m_coarseLocations[i + CH_SPACEDIM][dC];
Box loBox = adjCellLo(fBox, i, 1);
Box hiBox = adjCellHi(fBox, i, 1);
if (cBox.intersectsNotEmpty(loBox)) lo.push_back(loBox & cBox);
if (cBox.intersectsNotEmpty(hiBox)) hi.push_back(hiBox & cBox);
}
}
}
}
Box domainBox = coarsenedDomain.domainBox();
if (a_dProblem.isPeriodic()) {
Vector<Box> periodicBoxes[2 * CH_SPACEDIM];
for (dF.begin(); dF.ok(); ++dF) {
const Box& fBox = coarsenedFine.get(dF);
for (int i = 0; i < CH_SPACEDIM; i++) {
if (a_dProblem.isPeriodic(i)) {
if (fBox.smallEnd(i) == domainBox.smallEnd(i))
periodicBoxes[i].push_back(adjCellLo(fBox, i, 1));
if (fBox.bigEnd(i) == domainBox.bigEnd(i))
periodicBoxes[i + CH_SPACEDIM].push_back(adjCellHi(fBox, i, 1));
}
}
}
for (int i = 0; i < CH_SPACEDIM; i++) {
Vector<Box>& loV = periodicBoxes[i];
Vector<Box>& hiV = periodicBoxes[i + CH_SPACEDIM];
int size = domainBox.size(i);
for (int j = 0; j < loV.size(); j++) loV[j].shift(i, size);
for (int j = 0; j < hiV.size(); j++) hiV[j].shift(i, -size);
}
for (dC.begin(); dC.ok(); ++dC) {
const Box& cBox = a_dblCoarse.get(dC);
for (int i = 0; i < CH_SPACEDIM; i++)
if (a_dProblem.isPeriodic(i)) {
Vector<Box>& loV = periodicBoxes[i];
Vector<Box>& hiV = periodicBoxes[i + CH_SPACEDIM];
if (cBox.smallEnd(i) == domainBox.smallEnd(i) ) {
Vector<Box>& hi = m_coarseLocations[i + CH_SPACEDIM][dC];
for (int j = 0; j < hiV.size(); j++) {
if (cBox.intersectsNotEmpty(hiV[j])) hi.push_back(cBox & hiV[j]);
}
}
if (cBox.bigEnd(i) == domainBox.bigEnd(i) ) {
Vector<Box>& lo = m_coarseLocations[i][dC];
for (int j = 0; j < loV.size(); j++) {
if (cBox.intersectsNotEmpty(loV[j])) lo.push_back(cBox & loV[j]);
}
}
}
}
}
}
void
MappedLevelFluxRegister::incrementFine(const FArrayBox& a_fineFlux,
Real a_scale,
const DataIndex& a_fineDataIndex,
const Interval& a_srcInterval,
const Interval& a_dstInterval,
int a_dir,
Side::LoHiSide a_sd)
{
CH_assert(isDefined());
if (!(m_isDefined & FluxRegFineDefined)) return;
CH_assert(a_srcInterval.size() == a_dstInterval.size());
CH_TIME("MappedLevelFluxRegister::incrementFine");
// We cast away the constness in a_coarseFlux for the scope of this function. This
// should be acceptable, since at the end of the day there is no change to it. -JNJ
FArrayBox& fineFlux = const_cast<FArrayBox&>(a_fineFlux); // Muhahaha.
fineFlux.shiftHalf(a_dir, sign(a_sd));
Real denom = 1.0;
if (m_scaleFineFluxes) {
denom = m_nRefine.product() / m_nRefine[a_dir];
}
Real scale = sign(a_sd) * a_scale / denom;
FArrayBox& cFine = m_fineFlux[a_fineDataIndex];
// FArrayBox cFineFortran(cFine.box(), cFine.nComp());
// cFineFortran.copy(cFine);
Box clipBox = m_fineFlux.box(a_fineDataIndex);
clipBox.refine(m_nRefine);
Box fineBox;
if (a_sd == Side::Lo) {
fineBox = adjCellLo(clipBox, a_dir, 1);
fineBox &= fineFlux.box();
} else {
fineBox = adjCellHi(clipBox, a_dir, 1);
fineBox &= fineFlux.box();
}
#if 0
for (BoxIterator b(fineBox); b.ok(); ++b) {
int s = a_srcInterval.begin();
int d = a_dstInterval.begin();
for (; s <= a_srcInterval.end(); ++s, ++d) {
cFine(coarsen(b(), m_nRefine), d) += scale * fineFlux(b(), s);
}
}
#else
// shifting to ensure fineBox is in the positive quadrant, so IntVect coarening
// is just integer division.
const Box& box = coarsen(fineBox, m_nRefine);
Vector<Real> regbefore(cFine.nComp());
Vector<Real> regafter(cFine.nComp());
if (s_verbose && (a_dir == debugdir) && box.contains(ivdebnoeb)) {
for (int ivar = 0; ivar < cFine.nComp(); ivar++) {
regbefore[ivar] = cFine(ivdebnoeb, ivar);
}
}
const IntVect& iv = fineBox.smallEnd();
IntVect civ = coarsen(iv, m_nRefine);
int srcComp = a_srcInterval.begin();
int destComp = a_dstInterval.begin();
int ncomp = a_srcInterval.size();
FORT_MAPPEDINCREMENTFINE(CHF_CONST_FRA_SHIFT(fineFlux, iv),
CHF_FRA_SHIFT(cFine, civ),
CHF_BOX_SHIFT(fineBox, iv),
CHF_CONST_INTVECT(m_nRefine),
CHF_CONST_REAL(scale),
CHF_CONST_INT(srcComp),
CHF_CONST_INT(destComp),
CHF_CONST_INT(ncomp));
if (s_verbose && (a_dir == debugdir) && box.contains(ivdebnoeb)) {
for (int ivar = 0; ivar < cFine.nComp(); ivar++) {
regafter[ivar] = cFine(ivdebnoeb, ivar);
}
}
if (s_verbose && (a_dir == debugdir) && box.contains(ivdebnoeb)) {
pout() << "levelfluxreg::incrementFine: scale = " << scale << endl;
Box refbox(ivdebnoeb, ivdebnoeb);
refbox.refine(m_nRefine);
refbox &= fineBox;
if (!refbox.isEmpty()) {
pout() << "fine fluxes = " << endl;
for (BoxIterator bit(refbox); bit.ok(); ++bit) {
for (int ivar = 0; ivar < cFine.nComp(); ivar++) {
pout() << "iv = " << bit() << "(";
for (int ivar = 0; ivar < cFine.nComp(); ivar++) {
pout() << fineFlux(bit(), ivar);
}
pout() << ")" << endl;
}
}
}
for (int ivar = 0; ivar < cFine.nComp(); ivar++) {
pout() << " reg before = " << regbefore[ivar] << ", ";
pout() << " reg after = " << regafter[ivar] << ", ";
}
pout() << endl;
}
//fineBox.shift(-shift);
// now, check that cFineFortran and cFine are the same
//fineBox.coarsen(m_nRefine);
// for (BoxIterator b(fineBox); b.ok(); ++b)
// {
// if (cFineFortran(b(),0) != cFine(b(),0))
// {
// MayDay::Error("Fortran doesn't match C++");
// }
// }
// need to shift boxes back to where they were on entry.
// cFine.shift(-shift/m_nRefine);
#endif
fineFlux.shiftHalf(a_dir, - sign(a_sd));
}
// new define
void
LevelFluxRegisterEdge::define(
const DisjointBoxLayout& a_dbl,
const DisjointBoxLayout& a_dblCoarse,
const ProblemDomain& a_dProblem,
int a_nRefine,
int a_nComp)
{
m_isDefined = true;
CH_assert(a_nRefine > 0);
CH_assert(a_nComp > 0);
CH_assert(!a_dProblem.isEmpty());
m_nComp = a_nComp;
m_nRefine = a_nRefine;
m_domainCoarse = coarsen(a_dProblem, a_nRefine);
CH_assert (a_dblCoarse.checkPeriodic(m_domainCoarse));
// allocate copiers
m_crseCopiers.resize(SpaceDim*2);
SideIterator side;
// create a Vector<Box> of the fine boxes which also includes periodic images,
// since we don't really care about the processor layouts, etc
Vector<Box> periodicFineBoxes;
CFStencil::buildPeriodicVector(periodicFineBoxes, a_dProblem, a_dbl);
// now coarsen these boxes...
for (int i=0; i<periodicFineBoxes.size(); i++)
{
periodicFineBoxes[i].coarsen(m_nRefine);
}
for (int idir=0 ; idir<SpaceDim; ++idir)
{
for (side.begin(); side.ok(); ++side)
{
// step one, build fineBoxes, flux register boxes
// indexed by the fine level but in the coarse index
// space
DisjointBoxLayout fineBoxes,tmp;
// first create coarsened dbl, then compute flux register boxes
// adjacent to coarsened fine boxes
coarsen(tmp, a_dbl, m_nRefine);
if (side() == Side::Lo)
{
adjCellLo(fineBoxes, tmp, idir,1);
}
else
{
adjCellHi(fineBoxes, tmp, idir,1);
}
// now define the FluxBoxes of fabFine on this DisjointBoxLayout
m_fabFine[index(idir, side())].define(fineBoxes, a_nComp);
LayoutData<Vector<Vector<IntVectSet> > >& ivsetsVect
= m_refluxLocations[index(idir, side())];
ivsetsVect.define(a_dblCoarse);
LayoutData<Vector<DataIndex> >& mapsV =
m_coarToCoarMap[index(idir, side())];
mapsV.define(a_dblCoarse);
DisjointBoxLayout coarseBoxes = a_dblCoarse;
DataIterator dit = a_dblCoarse.dataIterator();
for (dit.begin(); dit.ok(); ++dit)
{
unsigned int thisproc = a_dblCoarse.procID(dit());
if (thisproc == procID())
{
ivsetsVect[DataIndex(dit())].resize(SpaceDim);
}
const Box& coarseBox = a_dblCoarse[dit()];
int count = 0;
for (int i=0; i<periodicFineBoxes.size(); i++)
{
Box regBox;
if (side() == Side::Lo)
{
regBox = adjCellLo(periodicFineBoxes[i], idir, 1);
}
else
{
regBox = adjCellHi(periodicFineBoxes[i], idir, 1);
}
// do this little dance in order to ensure that
// we catch corner cells which might be in different
// boxes.
Box testBox(regBox);
testBox.grow(1);
testBox.grow(idir,-1);
if (testBox.intersectsNotEmpty(coarseBox))
{
testBox &= coarseBox;
++count;
unsigned int proc = a_dblCoarse.procID(dit());
const DataIndex index = DataIndex(dit());
if (proc == procID())
{
mapsV[DataIndex(dit())].push_back(index);
// loop over face directions here
for (int faceDir=0; faceDir<SpaceDim; faceDir++)
{
// do nothing in normal direction
if (faceDir != idir)
{
// this should give us the face indices for the
// faceDir-centered faces adjacent to the coarse-fine
// interface which are contained in the current
// coarse box
Box intersectBox(regBox);
Box coarseEdgeBox(coarseBox);
coarseEdgeBox.surroundingNodes(faceDir);
intersectBox.surroundingNodes(faceDir);
intersectBox &= coarseEdgeBox;
intersectBox.shiftHalf(faceDir,1);
IntVectSet localIV(intersectBox);
ivsetsVect[DataIndex(dit())][faceDir].push_back(localIV);
}
}
}
}
} // end loop over boxes on coarse level
}
m_regCoarse.define(coarseBoxes, a_nComp, IntVect::Unit);
// last thing to do is to define copiers
m_crseCopiers[index(idir, side())].define(fineBoxes, coarseBoxes,
IntVect::Unit);
}
}
}
void VCAMRPoissonOp2::reflux(const LevelData<FArrayBox>& a_phiFine,
const LevelData<FArrayBox>& a_phi,
LevelData<FArrayBox>& a_residual,
AMRLevelOp<LevelData<FArrayBox> >* a_finerOp)
{
CH_TIME("VCAMRPoissonOp2::reflux");
int ncomp = 1;
ProblemDomain fineDomain = refine(m_domain, m_refToFiner);
LevelFluxRegister levfluxreg(a_phiFine.disjointBoxLayout(),
a_phi.disjointBoxLayout(),
fineDomain,
m_refToFiner,
ncomp);
levfluxreg.setToZero();
Interval interv(0,a_phi.nComp()-1);
DataIterator dit = a_phi.dataIterator();
for (dit.reset(); dit.ok(); ++dit)
{
const FArrayBox& coarfab = a_phi[dit];
const FluxBox& coarBCoef = (*m_bCoef)[dit];
const Box& gridBox = a_phi.getBoxes()[dit];
for (int idir = 0; idir < SpaceDim; idir++)
{
FArrayBox coarflux;
Box faceBox = surroundingNodes(gridBox, idir);
getFlux(coarflux, coarfab, coarBCoef , faceBox, idir);
Real scale = 1.0;
levfluxreg.incrementCoarse(coarflux, scale,dit(),
interv,interv,idir);
}
}
LevelData<FArrayBox>& p = ( LevelData<FArrayBox>&)a_phiFine;
// has to be its own object because the finer operator
// owns an interpolator and we have no way of getting to it
VCAMRPoissonOp2* finerAMRPOp = (VCAMRPoissonOp2*) a_finerOp;
QuadCFInterp& quadCFI = finerAMRPOp->m_interpWithCoarser;
quadCFI.coarseFineInterp(p, a_phi);
// p.exchange(a_phiFine.interval()); // BVS is pretty sure this is not necesary.
IntVect phiGhost = p.ghostVect();
DataIterator ditf = a_phiFine.dataIterator();
const DisjointBoxLayout& dblFine = a_phiFine.disjointBoxLayout();
for (ditf.reset(); ditf.ok(); ++ditf)
{
const FArrayBox& phifFab = a_phiFine[ditf];
const FluxBox& fineBCoef = (*(finerAMRPOp->m_bCoef))[ditf];
const Box& gridbox = dblFine.get(ditf());
for (int idir = 0; idir < SpaceDim; idir++)
{
int normalGhost = phiGhost[idir];
SideIterator sit;
for (sit.begin(); sit.ok(); sit.next())
{
Side::LoHiSide hiorlo = sit();
Box fabbox;
Box facebox;
// assumption here that the stencil required
// to compute the flux in the normal direction
// is 2* the number of ghost cells for phi
// (which is a reasonable assumption, and probably
// better than just assuming you need one cell on
// either side of the interface
// (dfm 8-4-06)
if (sit() == Side::Lo)
{
fabbox = adjCellLo(gridbox,idir, 2*normalGhost);
fabbox.shift(idir, 1);
facebox = bdryLo(gridbox, idir,1);
}
else
{
fabbox = adjCellHi(gridbox,idir, 2*normalGhost);
fabbox.shift(idir, -1);
facebox = bdryHi(gridbox, idir, 1);
}
// just in case we need ghost cells in the transverse direction
// (dfm 8-4-06)
for (int otherDir=0; otherDir<SpaceDim; ++otherDir)
{
if (otherDir != idir)
{
fabbox.grow(otherDir, phiGhost[otherDir]);
}
}
CH_assert(!fabbox.isEmpty());
FArrayBox phifab(fabbox, a_phi.nComp());
phifab.copy(phifFab);
FArrayBox fineflux;
getFlux(fineflux, phifab, fineBCoef, facebox, idir,
m_refToFiner);
Real scale = 1.0;
levfluxreg.incrementFine(fineflux, scale, ditf(),
interv, interv, idir, hiorlo);
}
}
}
Real scale = 1.0/m_dx;
levfluxreg.reflux(a_residual, scale);
}
void oldLoHiCenter(Box& a_loBox,
int& a_hasLo,
Box& a_hiBox,
int& a_hasHi,
Box& a_centerBox,
Box& a_entireBox,
const Box& a_inBox,
const ProblemDomain& a_domain,
const int& a_dir)
{
// Make a copy of the input box which can be modified
Box inBox = a_inBox;
inBox &= a_domain;
// The centered difference box is always one smaller in a_dir
a_centerBox = inBox;
a_centerBox.grow(a_dir,-1);
// The union of all the output boxes start off equal to the center
// difference portion on the input box (intersected with the domain)
a_entireBox = a_centerBox;
// See if this chops off the high side of the input box
Box tmp = a_inBox;
tmp.shift(a_dir,-1);
tmp &= a_domain;
tmp.shift(a_dir,1);
// If so, set up the high, one-sided difference box, a_hiBox, and expand
// the entire box to include it
if (!a_domain.contains(tmp))
{
a_hasHi = 1;
tmp.shift(a_dir,-2);
a_hiBox = adjCellHi(tmp,a_dir);
a_entireBox.growHi(a_dir,1);
}
else
{
a_hasHi = 0;
a_hiBox = Box();
}
// See if this chops off the low side of the input box
tmp = a_inBox;
tmp.shift(a_dir,1);
tmp &= a_domain;
tmp.shift(a_dir,-1);
// If so, set up the low, one-sided difference box, a_loBox, and expand
// the entire box to include it
if (!a_domain.contains(tmp))
{
a_hasLo = 1;
tmp.shift(a_dir,2);
a_loBox = adjCellLo(tmp,a_dir);
a_entireBox.growLo(a_dir,1);
}
else
{
a_hasLo = 0;
a_loBox = Box();
}
// Make some simple sanity checks
CH_assert(a_entireBox.contains(a_centerBox));
if (a_hasLo == 1)
{
CH_assert(a_entireBox.contains(a_loBox));
}
if (a_hasHi == 1)
{
CH_assert(a_entireBox.contains(a_hiBox));
}
}
void
EBPoissonOp::
defineStencils()
{
CH_TIMERS("EBPoissonOp::defineStencils");
CH_TIMER("opStencil_define", t1);
CH_TIMER("colorStencil_define", t2);
// define ebstencil for irregular applyOp
m_opEBStencil.define(m_eblg.getDBL());
// create vofstencils for applyOp
LayoutData<BaseIVFAB<VoFStencil> > opStencil;
opStencil.define(m_eblg.getDBL());
//define bc stencils and create flux stencil
m_ebBC->define((*m_eblg.getCFIVS()), m_dxScale*m_beta);
LayoutData<BaseIVFAB<VoFStencil> >* fluxStencil = m_ebBC->getFluxStencil(0);
//create and define colored stencils (2 parts)
LayoutData<BaseIVFAB<VoFStencil> > colorStencil;
colorStencil.define(m_eblg.getDBL());
LayoutData<BaseIVFAB<VoFStencil> > rhsColorStencil;
rhsColorStencil.define(m_eblg.getDBL());
m_alphaDiagWeight.define( m_eblg.getDBL());
m_betaDiagWeight.define( m_eblg.getDBL());
m_vofItIrreg.define( m_eblg.getDBL()); // vofiterator cache
Box domainBox = m_eblg.getDomain().domainBox();
Box sideBoxLo[SpaceDim];
Box sideBoxHi[SpaceDim];
for (int idir = 0; idir < SpaceDim; idir++)
{
sideBoxLo[idir] = adjCellLo(domainBox, idir, 1);
sideBoxLo[idir].shift(idir, 1);
sideBoxHi[idir] = adjCellHi(domainBox, idir, 1);
sideBoxHi[idir].shift(idir, -1);
m_vofItIrregDomLo[idir].define( m_eblg.getDBL()); // vofiterator cache for domain lo
m_vofItIrregDomHi[idir].define( m_eblg.getDBL()); // vofiterator cache for domain hi
}
CH_START(t1);
for (DataIterator dit = m_eblg.getDBL().dataIterator(); dit.ok(); ++dit)
{
const Box& curBox = m_eblg.getDBL().get(dit());
const EBISBox& curEBISBox = m_eblg.getEBISL()[dit()];
const EBGraph& curEBGraph = curEBISBox.getEBGraph();
IntVectSet notRegular = curEBISBox.getIrregIVS (curBox);
BaseIVFAB<VoFStencil>& curStencilBaseIVFAB = opStencil[dit()];
BaseIVFAB<Real>& alphaWeight = m_alphaDiagWeight[dit()];
BaseIVFAB<Real>& betaWeight = m_betaDiagWeight[dit()];
curStencilBaseIVFAB.define(notRegular,curEBGraph, 1);
alphaWeight.define( notRegular,curEBGraph, 1);
betaWeight.define( notRegular,curEBGraph, 1);
//cache the vofIterators
m_vofItIrreg[dit()].define(notRegular,curEBISBox.getEBGraph());
for (int idir = 0; idir < SpaceDim; idir++)
{
IntVectSet loIrreg = notRegular;
IntVectSet hiIrreg = notRegular;
loIrreg &= sideBoxLo[idir];
hiIrreg &= sideBoxHi[idir];
m_vofItIrregDomLo[idir][dit()].define(loIrreg,curEBISBox.getEBGraph());
m_vofItIrregDomHi[idir][dit()].define(hiIrreg,curEBISBox.getEBGraph());
}
//Operator vofstencil
VoFIterator& vofit = m_vofItIrreg[dit()];
for (vofit.reset(); vofit.ok(); ++vofit)
{
const VolIndex& VoF = vofit();
VoFStencil& curStencil = curStencilBaseIVFAB(VoF,0);
getOpVoFStencil(curStencil,curEBISBox,VoF);
Real& curAlphaWeight = alphaWeight(VoF,0);
Real& curBetaWeight = betaWeight(VoF,0);
const Real kappa = curEBISBox.volFrac(VoF);
curAlphaWeight = kappa;
curBetaWeight = 0.0;
for (int i = 0; i < curStencil.size(); i++)
{
if (curStencil.vof(i) == VoF)
{
curBetaWeight += curStencil.weight(i);
break;
}
}
curStencil *= m_beta;
if (m_alpha != 0)
{
curStencil.add(VoF, kappa*m_alpha);
}
const IntVect& iv = VoF.gridIndex();
for (int idir = 0; idir < SpaceDim; idir++)
{
Box loSide = bdryLo(m_eblg.getDomain(),idir);
loSide.shiftHalf(idir,1);
if (loSide.contains(iv))
{
Real faceAreaFrac = 0.0;
Vector<FaceIndex> faces = curEBISBox.getFaces(VoF,idir,Side::Lo);
for (int i = 0; i < faces.size(); i++)
{
faceAreaFrac += curEBISBox.areaFrac(faces[i]);
}
curBetaWeight += -faceAreaFrac * m_invDx2[idir];
}
Box hiSide = bdryHi(m_eblg.getDomain(),idir);
hiSide.shiftHalf(idir,-1);
if (hiSide.contains(iv))
{
Real faceAreaFrac = 0.0;
Vector<FaceIndex> faces = curEBISBox.getFaces(VoF,idir,Side::Hi);
for (int i = 0; i < faces.size(); i++)
{
faceAreaFrac += curEBISBox.areaFrac(faces[i]);
}
curBetaWeight += -faceAreaFrac * m_invDx2[idir];
}
}
if (curBetaWeight == 0.0)
{
curBetaWeight = -1.0;
}
if (fluxStencil != NULL)
{
BaseIVFAB<VoFStencil>& fluxStencilBaseIVFAB = (*fluxStencil)[dit()];
VoFStencil& fluxStencilPt = fluxStencilBaseIVFAB(VoF,0);
curStencil += fluxStencilPt;
}
}//vofit
//Operator ebstencil
m_opEBStencil[dit()] = RefCountedPtr<EBStencil>(new EBStencil(m_vofItIrreg[dit()].getVector(), opStencil[dit()], m_eblg.getDBL().get(dit()), m_eblg.getEBISL()[dit()], m_ghostCellsPhi, m_ghostCellsRHS));
}//dit
CH_STOP(t1);
//color vofstencils and ebstencils
IntVect color = IntVect::Zero;
IntVect limit = IntVect::Unit;
color[0]=-1;
// Loop over all possibilities (in all dimensions)
CH_START(t2);
for (int icolor = 0; icolor < m_colors.size(); icolor++)
{
m_colorEBStencil[icolor].define(m_eblg.getDBL());
m_rhsColorEBStencil[icolor].define(m_eblg.getDBL());
m_vofItIrregColor[icolor].define( m_eblg.getDBL());
for (int idir = 0; idir < SpaceDim; idir++)
{
m_vofItIrregColorDomLo[icolor][idir].define( m_eblg.getDBL());
m_vofItIrregColorDomHi[icolor][idir].define( m_eblg.getDBL());
}
for (DataIterator dit = m_eblg.getDBL().dataIterator(); dit.ok(); ++dit)
{
IntVectSet ivsColor;
const EBISBox& curEBISBox = m_eblg.getEBISL()[dit()];
const EBGraph& curEBGraph = curEBISBox.getEBGraph();
Box dblBox( m_eblg.getDBL().get(dit()) );
BaseIVFAB<VoFStencil>& curStencilBaseIVFAB = opStencil[dit()];
BaseIVFAB<VoFStencil>& colorStencilBaseIVFAB = colorStencil[dit()];
BaseIVFAB<VoFStencil>& rhsColorStencilBaseIVFAB = rhsColorStencil[dit()];
const BaseIVFAB<Real>& curAlphaWeight = m_alphaDiagWeight[dit()];
const BaseIVFAB<Real>& curBetaWeight = m_betaDiagWeight[dit()];
VoFIterator& vofit = m_vofItIrreg[dit()];
int vofOrdinal = 0;
for (vofit.reset(); vofit.ok(); ++vofit, ++vofOrdinal)
{
const VolIndex& vof = vofit();
const IntVect& iv = vof.gridIndex();
bool doThisVoF = true;
for (int idir = 0; idir < SpaceDim; idir++)
{
if (iv[idir] % 2 != color[idir])
{
doThisVoF = false;
break;
}
}
if (doThisVoF)
{
ivsColor |= iv;
}
}
m_vofItIrregColor[icolor][dit()].define(ivsColor, curEBGraph);
colorStencilBaseIVFAB.define(ivsColor, curEBGraph, 1);
rhsColorStencilBaseIVFAB.define(ivsColor, curEBGraph, 1);
for (int idir = 0; idir < SpaceDim; idir++)
{
IntVectSet loIrregColor = ivsColor;
IntVectSet hiIrregColor = ivsColor;
loIrregColor &= sideBoxLo[idir];
hiIrregColor &= sideBoxHi[idir];
m_vofItIrregColorDomLo[icolor][idir][dit()].define(loIrregColor,curEBISBox.getEBGraph());
m_vofItIrregColorDomHi[icolor][idir][dit()].define(hiIrregColor,curEBISBox.getEBGraph());
}
VoFIterator& vofitcolor = m_vofItIrregColor[icolor][dit()];
for (vofitcolor.reset(); vofitcolor.ok(); ++vofitcolor)
{
const VolIndex& vof = vofitcolor();
VoFStencil& curStencil = curStencilBaseIVFAB(vof,0);
VoFStencil& colorStencil = colorStencilBaseIVFAB(vof,0);
VoFStencil& rhsColorStencil = rhsColorStencilBaseIVFAB(vof,0);
Real weightIrreg = m_alpha*curAlphaWeight(vof,0) + m_beta*curBetaWeight(vof,0);
colorStencil = curStencil;
colorStencil *= (-1.0/weightIrreg);
colorStencil.add(vof, 1.0);
rhsColorStencil.add(vof, 1.0/weightIrreg);
}
Vector<VolIndex> srcVofs = m_vofItIrregColor[icolor][dit()].getVector();
//color ebstencils
m_colorEBStencil[icolor][dit()] = RefCountedPtr<EBStencil>(new EBStencil(srcVofs, colorStencil[dit()] , m_eblg.getDBL().get(dit()), m_eblg.getEBISL()[dit()], m_ghostCellsPhi, m_ghostCellsPhi));
m_rhsColorEBStencil[icolor][dit()] = RefCountedPtr<EBStencil>(new EBStencil(srcVofs, rhsColorStencil[dit()] , m_eblg.getDBL().get(dit()) , m_eblg.getEBISL()[dit()], m_ghostCellsRHS, m_ghostCellsPhi));
}//dit
}//color
CH_STOP(t2);
}