static ajint domainreso_StrComp(const void *str1,
const void *str2)
{
AjPStr p = NULL;
AjPStr q = NULL;
p = (*(AjPStr*)str1);
q = (*(AjPStr*)str2);
return ajStrCmpS(p, q);
}
static int infoalign_Getrefseq(const AjPStr refseq, const AjPSeqset seqset)
{
ajint i;
const AjPSeq seq;
for(i=0; i<(ajint)ajSeqsetGetSize(seqset); i++)
{
seq = ajSeqsetGetseqSeq(seqset, i);
if(!ajStrCmpS(ajSeqGetNameS(seq), refseq))
return i;
}
/* not a name of a sequence, so it must be a number */
if(!ajStrToInt(refseq, &i))
ajFatal("Reference sequence is not a sequence ID or a number: %S",
refseq);
if(i < 0 || i > (ajint) ajSeqsetGetSize(seqset))
ajFatal("Reference sequence number < 0 or > number "
"of input sequences: %d", i);
return i-1;
}
