struct annoGrator *annoGratorNew(struct annoStreamer *mySource)
/* Make a new integrator of columns from mySource with (positions of) rows passed to integrate().
* mySource becomes property of the new annoGrator. */
{
struct annoGrator *self;
AllocVar(self);
annoGratorInit(self, mySource);
return self;
}
struct annoGrator *annoGratorGpVarNew(struct annoStreamer *mySource)
/* Make a subclass of annoGrator that combines genePreds from mySource with
* pgSnp rows from primary source to predict functional effects of variants
* on genes.
* mySource becomes property of the new annoGrator (don't close it, close annoGrator). */
{
struct annoGratorGpVar *self;
AllocVar(self);
struct annoGrator *gSelf = &(self->grator);
annoGratorInit(gSelf, mySource);
struct annoStreamer *sSelf = &(gSelf->streamer);
// We add columns beyond what comes from mySource, so update our public-facing asObject:
sSelf->setAutoSqlObject(sSelf, annoGpVarAsObj(mySource->asObj));
gSelf->setOverlapRule = aggvSetOverlapRule;
sSelf->close = aggvClose;
// integrate by adding gpFx fields
gSelf->integrate = annoGratorGpVarIntegrate;
self->dyScratch = dyStringNew(0);
return gSelf;
}
