Flower *flower_loadFromBinaryRepresentation(void **binaryString, CactusDisk *cactusDisk) {
Flower *flower = NULL;
bool buildFaces;
if (binaryRepresentation_peekNextElementType(*binaryString) == CODE_FLOWER) {
binaryRepresentation_popNextElementType(binaryString);
flower = flower_construct3(binaryRepresentation_getName(binaryString), cactusDisk); //Constructed without an event tree.
flower_setBuiltBlocks(flower, binaryRepresentation_getBool(binaryString));
flower_setBuiltTrees(flower, binaryRepresentation_getBool(binaryString));
buildFaces = binaryRepresentation_getBool(binaryString);
flower->parentFlowerName = binaryRepresentation_getName(binaryString);
eventTree_loadFromBinaryRepresentation(binaryString, flower);
while (sequence_loadFromBinaryRepresentation(binaryString, flower) != NULL)
;
while (end_loadFromBinaryRepresentation(binaryString, flower) != NULL)
;
while (block_loadFromBinaryRepresentation(binaryString, flower) != NULL)
;
while (group_loadFromBinaryRepresentation(binaryString, flower) != NULL)
;
while (chain_loadFromBinaryRepresentation(binaryString, flower) != NULL)
;
flower_setBuildFaces(flower, buildFaces);
assert(binaryRepresentation_popNextElementType(binaryString) == CODE_FLOWER);
}
return flower;
}
void testBinaryRepresentation_bool(CuTest* testCase) {
cactusSerialisationTestSetup();
void *vA2 = vA;
bool i = 0;
bool j = 1;
binaryRepresentation_writeBool(i, writeFn);
binaryRepresentation_writeBool(j, writeFn);
CuAssertTrue(testCase, i == binaryRepresentation_getBool(&vA2));
CuAssertTrue(testCase, j == binaryRepresentation_getBool(&vA2));
cactusSerialisationTestTeardown();
}
MetaSequence *metaSequence_loadFromBinaryRepresentation(void **binaryString,
CactusDisk *cactusDisk) {
MetaSequence *metaSequence;
Name name;
int64_t start;
int64_t length;
Name stringName;
Name eventName;
char *header;
metaSequence = NULL;
if(binaryRepresentation_peekNextElementType(*binaryString) == CODE_META_SEQUENCE) {
binaryRepresentation_popNextElementType(binaryString);
name = binaryRepresentation_getName(binaryString);
start = binaryRepresentation_getInteger(binaryString);
length = binaryRepresentation_getInteger(binaryString);
eventName = binaryRepresentation_getName(binaryString);
stringName = binaryRepresentation_getName(binaryString);
header = binaryRepresentation_getString(binaryString);
bool isTrivialSequence = binaryRepresentation_getBool(binaryString);
metaSequence = metaSequence_construct2(name, start, length,
stringName, header, eventName, isTrivialSequence, cactusDisk);
free(header);
}
return metaSequence;
}
static void cactusDisk_loadFromBinaryRepresentation(void **binaryString, CactusDisk *cactusDisk, stKVDatabaseConf *conf) {
cactusDisk->sequencesReadFileHandle = NULL;
cactusDisk->sequencesWriteFileHandle = NULL; //I think these lines are not needed.
cactusDisk->sequencesFileName = NULL;
cactusDisk->absSequencesFileName = NULL;
assert(binaryRepresentation_peekNextElementType(*binaryString) == CODE_CACTUS_DISK);
binaryRepresentation_popNextElementType(binaryString);
cactusDisk->storeSequencesInAFile = binaryRepresentation_getBool(binaryString);
if (cactusDisk->storeSequencesInAFile) {
cactusDisk->sequencesFileName = binaryRepresentation_getString(binaryString);
if (stKVDatabaseConf_getDir(conf) == NULL) {
stThrowNew(CACTUS_DISK_EXCEPTION_ID,
"The database conf does not contain a directory in which the sequence file is to be found!\n");
}
cactusDisk->absSequencesFileName = stString_print("%s/%s", stKVDatabaseConf_getDir(conf),
cactusDisk->sequencesFileName);
}
assert(binaryRepresentation_peekNextElementType(*binaryString) == CODE_CACTUS_DISK);
binaryRepresentation_popNextElementType(binaryString);
}
Event *event_loadFromBinaryRepresentation(void **binaryString,
EventTree *eventTree) {
Event *event, *parentEvent;
Name name;
float branchLength;
char *header;
event = NULL;
if (binaryRepresentation_peekNextElementType(*binaryString) == CODE_EVENT) {
binaryRepresentation_popNextElementType(binaryString);
parentEvent = eventTree_getEvent(eventTree,
binaryRepresentation_getName(binaryString));
assert(parentEvent != NULL);
name = binaryRepresentation_getName(binaryString);
branchLength = binaryRepresentation_getFloat(binaryString);
header = binaryRepresentation_getString(binaryString);
event
= event_construct(name, header, branchLength, parentEvent,
eventTree);
event_setOutgroupStatus(event, binaryRepresentation_getBool(binaryString));
free(header);
}
return event;
}
