static void hgHubConnectUnlisted(struct hubConnectStatus *hubList,
struct hash *publicHash)
/* Put up the list of unlisted hubs and other controls for the page. */
/* uses publicHash to distingusih public hubs from unlisted ones */
/* NOTE: Destroys hubList */
{
// put out the top of our page
printf("<div id=\"unlistedHubs\" class=\"hubList\"> \n"
"<table id=\"unlistedHubsTable\"> \n"
"<thead><tr> \n"
"<th colspan=\"6\" id=\"addHubBar\"><label for=\"hubUrl\">URL:</label> \n"
"<input name=\"hubText\" id=\"hubUrl\" class=\"hubField\""
"type=\"text\" size=\"65\"> \n"
"<input name=\"hubAddButton\""
"onClick=\"hubText.value=$.trim(hubText.value);if(validateUrl($('#hubUrl').val())) { document.addHubForm.elements['hubUrl'].value=hubText.value;"
"document.addHubForm.submit();return true;} else { return false;}\" "
"class=\"hubField\" type=\"button\" value=\"Add Hub\">\n"
"</th> \n"
"</tr> \n");
// count up the number of unlisted hubs we currently have
int unlistedHubCount = 0;
struct hubConnectStatus *unlistedHubList = NULL;
struct hubConnectStatus *hub, *nextHub;
for(hub = hubList; hub; hub = nextHub)
{
nextHub = hub->next;
// if url is not in publicHash, it's unlisted */
if (!((publicHash != NULL) && hashLookup(publicHash, hub->hubUrl)))
{
unlistedHubCount++;
slAddHead(&unlistedHubList, hub);
}
}
hubList = NULL; // hubList no longer valid
if (unlistedHubCount == 0)
{
// nothing to see here
printf("<tr><td>No Unlisted Track Hubs</td></tr>");
printf("</thead></table></div>");
return;
}
// time to output the big table. First the header
printf(
"<tr> "
"<th>Display</th> "
"<th>Hub Name</th> "
"<th>Description</th> "
"<th>Assemblies</th> "
"<th>URL</th> "
"<th>Disconnect</th> "
"</tr>\n"
"</thead>\n");
// start first row
printf("<tbody><tr>");
int count = 0;
for(hub = unlistedHubList; hub; hub = hub->next)
{
if (count)
webPrintLinkTableNewRow(); // ends last row and starts a new one
count++;
// if there's an error message, we don't let people select it
if (isEmpty(hub->errorMessage))
{
ourCellStart();
char hubName[32];
safef(hubName, sizeof(hubName), "%s%u", hgHubConnectHubVarPrefix, hub->id);
cartMakeCheckBox(cart, hubName, FALSE);
ourCellEnd();
}
else
{
// give people a chance to clear the error
ourCellStart();
printf(
"<input name=\"hubClearButton\""
"onClick=\"document.resetHubForm.elements['hubUrl'].value='%s';"
"document.resetHubForm.submit();return true;\" "
"class=\"hubField\" type=\"button\" value=\"check hub\">\n"
, hub->hubUrl);
ourCellEnd();
}
if (hub->trackHub != NULL)
ourPrintCell(hub->trackHub->shortLabel);
else
ourPrintCell("");
if (!isEmpty(hub->errorMessage))
printf("<TD><span class=\"hubError\">ERROR: %s </span>"
"<a href=\"../goldenPath/help/hgTrackHubHelp.html#Debug\">Debug</a></TD>\n",
hub->errorMessage);
else if (hub->trackHub != NULL)
ourPrintCell(hub->trackHub->longLabel);
else
ourPrintCell("");
if (hub->trackHub != NULL)
printGenomes(hub->trackHub);
else
ourPrintCell("");
ourPrintCell(hub->hubUrl);
ourCellStart();
printf(
"<input name=\"hubDisconnectButton\""
"onClick=\"document.disconnectHubForm.elements['hubId'].value='%d';"
"document.disconnectHubForm.submit();return true;\" "
"class=\"hubField\" type=\"button\" value=\"X\">\n"
, hub->id);
ourCellEnd();
}
printf("</TR></tbody></TABLE>\n");
printf("</div>");
}
void configurePage()
/* Put up configuration page. */
{
cartWebStart(cart, database, "Configure Genome Graphs");
hPrintf("<FORM ACTION=\"../cgi-bin/hgGenome\" METHOD=GET>\n");
cartSaveSession(cart);
hPrintf("<TABLE>\n");
hPrintf("<TR>\n");
hPrintf("<TD>\n");
hPrintf("image width: ");
cgiMakeIntVar(hggImageWidth, cartUsualInt(cart, hggImageWidth, hgDefaultPixWidth), 4);
hPrintf("</TD>\n");
hPrintf("<TD>\n");
hPrintf("graph height: ");
cgiMakeIntVar(hggGraphHeight, graphHeight(), 3);
hPrintf("</TD>\n");
hPrintf("<TD>\n");
hPrintf(" graphs per line: ");
makeNumMenu(hggGraphsPerLine, minGraphsPerLine, maxGraphsPerLine,
graphsPerLine());
hPrintf("</TD>\n");
hPrintf("<TD>\n");
hPrintf(" lines of graphs: ");
makeNumMenu(hggLinesOfGraphs, minLinesOfGraphs, maxLinesOfGraphs,
linesOfGraphs());
hPrintf("</TD>\n");
hPrintf("</TR>\n");
hPrintf("</TABLE>\n");
hPrintf("<TABLE><TR><TD>\n");
hPrintf("chromosome layout: ");
cgiMakeDropList(hggChromLayout, chromLayouts, ArraySize(chromLayouts),
chromLayout());
hPrintf("</TD></TR></TABLE>\n");
hPrintf("<TABLE><TR><TD>\n");
hPrintf("numerical labels: ");
cartMakeCheckBox(cart, hggLabels, TRUE);
hPrintf(" <I>Label axis on left for first graph and on right for last graph</I>");
hPrintf("</TD></TR></TABLE>\n");
hPrintf("<TABLE><TR><TD>\n");
hPrintf("highlight missing: ");
cartMakeCheckBox(cart, hggYellowMissing, FALSE);
hPrintf(" <I>Highlight background in yellow/gray if there is missing data in first graph</I>");
hPrintf("</TD></TR></TABLE>\n");
hPrintf("<TABLE><TR><TD>\n");
hPrintf("region padding: ");
cgiMakeIntVar(hggRegionPad, regionPad(), 6);
hPrintf(" <I>Number of bases to add to either side of regions over threshold</I>");
hPrintf("</TD></TR></TABLE>\n");
hPrintf("<TABLE><TR><TD>\n");
cgiMakeButton("submit", "submit");
hPrintf("</TD></TR></TABLE>\n");
hPrintf("</TD>\n");
hPrintf("</FORM>\n");
webNewSection("Configure Graphs");
hPrintf("Click on the hyperlink by the graph name to configure it.");
hTableStart();
hPrintf("<TR><TH>name</TH>");
hPrintf("<TH>description</TH></TR>");
struct slRef *ref;
for (ref = ggList; ref != NULL; ref = ref->next)
{
struct genoGraph *gg = ref->val;
/* Only show custom graphs, stand-alone DB graphs, and composite */
/* graphs. Don't show subGraphs part of a composite. */
if (gg->isSubGraph == FALSE)
{
char *tmp = cgiEncode(gg->name);
hPrintf("<TR><TD><A HREF=\"../cgi-bin/hgGenome?%s&%s=on&g=%s\">",
cartSidUrlString(cart), hggConfigureOne, tmp);
freeMem(tmp);
hPrintf("%s</A></TD>", gg->shortLabel);
hPrintf("<TD>%s</TD></TR>\n", gg->longLabel);
}
}
hTableEnd();
cartWebEnd();
}
static struct hash *outputPublicTable(struct sqlConnection *conn, char *publicTable)
/* Put up the list of public hubs and other controls for the page. */
{
struct hash *publicHash = NULL;
char query[512];
sqlSafef(query, sizeof(query), "select hubUrl,shortLabel,longLabel,dbList from %s",
publicTable);
struct sqlResult *sr = sqlGetResult(conn, query);
char **row;
boolean gotAnyRows = FALSE;
while ((row = sqlNextRow(sr)) != NULL)
{
char *url = row[0], *shortLabel = row[1], *longLabel = row[2],
*dbList = row[3];
if (gotAnyRows)
webPrintLinkTableNewRow();
else
{
/* output header */
printf("<div id=\"publicHubs\" class=\"hubList\"> \n");
printf("<table id=\"publicHubsTable\"> "
"<thead><tr> "
"<th>Display</th> "
"<th>Hub Name</th> "
"<th>Description</th> "
"<th>Assemblies</th> "
"<th>URL</th> "
"</tr></thead>\n");
// start first row
printf("<tbody> <tr>");
gotAnyRows = TRUE;
// allocate the hash to store hubUrl's
publicHash = newHash(5);
}
char *errorMessage = NULL;
// get an id for this hub
unsigned id = hubFindOrAddUrlInStatusTable(database, cart,
url, &errorMessage);
if ((id != 0) && isEmpty(errorMessage))
{
ourCellStart();
char hubName[32];
safef(hubName, sizeof(hubName), "%s%u", hgHubConnectHubVarPrefix, id);
cartMakeCheckBox(cart, hubName, FALSE);
ourCellEnd();
}
else if (!isEmpty(errorMessage))
{
// give user a chance to clear the error
ourCellStart();
printf(
"<input name=\"hubClearButton\""
"onClick=\"document.resetHubForm.elements['hubUrl'].value='%s';"
"document.resetHubForm.submit();return true;\" "
"class=\"hubField\" type=\"button\" value=\"check hub\">"
, url);
ourCellEnd();
}
else
errAbort("cannot get id for hub with url %s\n", url);
ourPrintCell(shortLabel);
if (isEmpty(errorMessage))
ourPrintCell(longLabel);
else
printf("<TD><span class=\"hubError\">ERROR: %s </span>"
"<a href=\"../goldenPath/help/hgTrackHubHelp.html#Debug\">Debug</a></TD>",
errorMessage);
printGenomeList(slNameListFromComma(dbList)); // Leaking a bit of memory
ourPrintCell(url);
hashStore(publicHash, url);
}
sqlFreeResult(&sr);
if (gotAnyRows)
{
printf("</TR></tbody></TABLE>\n");
printf("</div>");
}
return publicHash;
}
