bool FieldRef::isPrefixOf(const FieldRef& other) const {
// Can't be a prefix if the size is equal to or larger.
if (_size >= other._size) {
return false;
}
// Empty FieldRef is not a prefix of anything.
if (_size == 0) {
return false;
}
size_t common = commonPrefixSize(other);
return common == _size && other._size > common;
}
void regClusterMakeTableOfTables(char *type, char *input, char *output)
/* regClusterMakeTableOfTables - Make up a table of tables for regCluster program. */
{
FILE *f = mustOpen(output, "w");
struct slName *in, *inList = readAllLines(input);
/* Generally we'll have a bunch of file names that all start and/or end with the same
* thing. This loop will isolate out the bits that vary, and then call a type-specific
* routine to output the metadata columns from the middle parts. */
int commonPrefix = commonPrefixSize(inList);
int commonSuffix = commonSuffixSize(inList);
uglyf("regClusterMakeTableOfTables(type=%s, input=%s, output=%s)\n", type, input, output);
int scoreIx = scoreColIx - 1;
for (in = inList; in != NULL; in = in->next)
{
verbose(2, "Processing %s\n", in->name);
fprintf(f, "%s\t0\t1\t2\t%d\t", in->name, scoreIx);
fprintf(f, "%g", calcNormScoreFactor(in->name, scoreIx));
char *s = in->name;
int len = strlen(s);
char *midString = cloneStringZ(s+commonPrefix, len - commonPrefix - commonSuffix);
if (sameString(type, "uw01"))
uw01MetaOut(f, midString);
else if (sameString(type, "uw02"))
uw02MetaOut(f, midString);
else if (sameString(type, "ans01"))
ans01MetaOut(f, midString);
else if (sameString(type, "ans02"))
ans02MetaOut(f, midString);
else if (sameString(type, "enh01"))
enh01MetaOut(f, midString);
else if (sameString(type, "awgDnase01"))
awgDnase01MetaOut(f, midString);
else
errAbort("Unknown type '%s' in first command line parameter.", type);
freez(&midString);
fprintf(f, "\n");
}
carefulClose(&f);
}
void makeConfigFromFileList(char *input, char *output)
/* makeConfigFromFileList - Create config file for hgBedsToBedExps from list of files.. */
{
FILE *f = mustOpen(output, "w");
struct slName *in, *inList = readAllLines(input);
int commonPrefix = commonPrefixSize(inList);
int commonSuffix = commonSuffixSize(inList);
for (in = inList; in != NULL; in = in->next)
{
char *s = in->name;
int len = strlen(s);
char *midString = cloneStringZ(s+commonPrefix, len - commonPrefix - commonSuffix);
char *factor, *cell;
camelParseTwo(midString, &cell, &factor);
fprintf(f, "%s\t%s\t", factor, cell);
fprintf(f, "%s\t", cellAbbreviation(cell));
fprintf(f, "file\t%d\t", scoreCol-1);
fprintf(f, "%g\t", calcNormScoreFactor(in->name, scoreCol-1));
fprintf(f, "%s\n", in->name);
}
carefulClose(&f);
}
