//Send Data With Header to Client
void datasend(int sock,char* URL)
{
int m,n=BUF_SIZE,hlen;//hlen is header length
FILE *fp;
char *head=constructHeader(URL);
char wbuf[BUF_SIZE];
bzero(wbuf,BUF_SIZE);
fp=fopen(URL+1,"rb");
hlen=strlen(head);
printf("%s\n",head);
strcpy(wbuf,head);
//printf("%d",hlen);
//printf("%d",m);
m=fread(wbuf+hlen,1,BUF_SIZE-hlen,fp);//combine header and data
if (m < 0) error("ERROR read from file");
m=send (sock,wbuf,hlen+m,0);
if (m < 0) error("ERROR writing to socket");
//printf("%s",wbuf);
bzero(wbuf,BUF_SIZE);
while (n == BUF_SIZE)
{n=fread(wbuf,1,BUF_SIZE,fp);
//printf("%d",n);
if (n < 0) error("ERROR read from file");
m=send(sock,wbuf,BUF_SIZE,0);
//printf("%s",wbuf);
//printf("%d",m);
if (m < 0) error("ERROR writing to socket");
bzero(wbuf,BUF_SIZE);
//if(feof(fp)==0) break;
}
fclose(fp);
}
BamCat(
std::vector<std::string> const & rfilenames,
bool const putrank = false,
bool const rstreaming = false
)
: BamAlignmentDecoder(putrank),
streaming(rstreaming),
infos(libmaus::bambam::BamAlignmentDecoderInfo::filenameToInfo(rfilenames)),
Pwrappers(constructWrappers(infos,streaming)),
Pheader(constructHeader(infos,Pwrappers)),
header(*Pheader),
fileid(-1),
wrapper(),
decoder(0)
{
}
