inline void QTrimImpl ( FORMAT<TUPLETYPE>& fq )
{
std::vector< float > sum_qscores;
MapQualityToSumScore ( std::get<3>(fq.data), sum_qscores );
size_t read_length ( std::get<1>(fq.data).size() );
size_t cut_pos(0);
while ( read_length > quality_score_trait_.min_read_length_ )
{
if ( sum_qscores[read_length-1] < quality_score_trait_.q_table_[read_length-1] )
{
++cut_pos;
--read_length;
}
else
break;
}
std::get<1>(fq.data).resize ( std::get<1>(fq.data).size() - cut_pos );
std::get<3>(fq.data).resize ( std::get<3>(fq.data).size() - cut_pos );
}
Token Tokenizer::next_long_comment()
{
return cut_pos(Token_LongComment,ScanLongComment(text));
}
Token Tokenizer::next_space()
{
return cut_pos(Token_Space,ScanSpace(text));
}