void BytecodeLivenessAnalysis::compute()
{
runLivenessFixpoint(m_graph);
if (Options::dumpBytecodeLivenessResults())
dumpResults();
}
void ExtractNeighborsWorkflow::run()
{
const reference::SortedReferenceMetadata::MaskFiles &maskFiles =
xml_.getMaskFileList(oligo::KmerTraits<KmerT>::KMER_BASES);
if (maskFiles.empty())
{
BOOST_THROW_EXCEPTION(isaac::common::PreConditionException("No mask files in " + sortedReferenceMetadata_.string()));
}
const reference::SortedReferenceMetadata::Contigs contigs = xml_.getKaryotypeOrderedContigs();
const std::vector<unsigned long> contigOffsets = reference::computeContigOffsets(contigs);
std::vector<bool> neighbors(reference::genomeLength(contigs), false);
std::vector<bool> highRepeats(highRepeatsFilePath_.empty() ? 0 : reference::genomeLength(contigs), true);
// there could be mutliple mask widths in the xml. Just pick one.
const unsigned maskWidth = xml_.getDefaultMaskWidth();
BOOST_FOREACH(const reference::SortedReferenceMetadata::MaskFile &maskFile, maskFiles)
{
//Don't reprocess redundant mask files of different widths
if (maskWidth == maskFile.maskWidth)
{
scanMaskFile<KmerT>(maskFile, contigOffsets, neighbors, highRepeats);
}
}
dumpResults(neighbors, highRepeats);
}
void BytecodeLivenessAnalysis::compute()
{
computeBytecodeBasicBlocks(m_codeBlock, m_basicBlocks);
ASSERT(m_basicBlocks.size());
runLivenessFixpoint();
if (Options::dumpBytecodeLivenessResults())
dumpResults();
}
void ExtractNeighborsWorkflow::run()
{
const reference::SortedReferenceMetadata::MaskFiles &maskFiles =
xml_.getMaskFileList(oligo::KmerTraits<KmerT>::KMER_BASES);
if (maskFiles.empty())
{
BOOST_THROW_EXCEPTION(isaac::common::PreConditionException("No mask files in " + sortedReferenceMetadata_.string()));
}
const reference::SortedReferenceMetadata::Contigs contigs = xml_.getContigs();
const std::vector<uint64_t> contigOffsets = reference::computeContigOffsets(contigs);
std::vector<unsigned> karyotypes;
karyotypes.reserve(xml_.getContigs().size());
std::transform(xml_.getContigs().begin(), xml_.getContigs().end(), std::back_inserter(karyotypes),
boost::bind(&reference::SortedReferenceMetadata::Contig::karyotypeIndex_, _1));
std::vector<bool> neighbors(reference::genomeLength(contigs), false);
std::vector<bool> highRepeats(highRepeatsFilePath_.empty() ? 0 : reference::genomeLength(contigs), true);
// there could be multiple mask widths in the xml. Just fail if there are.
unsigned maskWidth = -1U;
BOOST_FOREACH(const reference::SortedReferenceMetadata::MaskFile &maskFile, maskFiles)
{
if (-1U == maskWidth)
{
maskWidth = maskFile.maskWidth;
}
ISAAC_ASSERT_MSG(maskWidth == maskFile.maskWidth, "Mixed mask widths are not supported");
scanMaskFile<KmerT>(maskFile, contigOffsets, karyotypes, neighbors, highRepeats);
}
dumpResults(neighbors, highRepeats);
}
void TestInvocation::invoke()
{
sizeWebViewForCurrentTest(m_pathOrURL.c_str());
updateLayoutType(m_pathOrURL.c_str());
updateTiledDrawingForCurrentTest(m_pathOrURL.c_str());
WKRetainPtr<WKStringRef> messageName = adoptWK(WKStringCreateWithUTF8CString("BeginTest"));
WKRetainPtr<WKMutableDictionaryRef> beginTestMessageBody = adoptWK(WKMutableDictionaryCreate());
WKRetainPtr<WKStringRef> dumpFrameLoadDelegatesKey = adoptWK(WKStringCreateWithUTF8CString("DumpFrameLoadDelegates"));
WKRetainPtr<WKBooleanRef> dumpFrameLoadDelegatesValue = adoptWK(WKBooleanCreate(shouldLogFrameLoadDelegates(m_pathOrURL.c_str())));
WKDictionaryAddItem(beginTestMessageBody.get(), dumpFrameLoadDelegatesKey.get(), dumpFrameLoadDelegatesValue.get());
WKRetainPtr<WKStringRef> dumpPixelsKey = adoptWK(WKStringCreateWithUTF8CString("DumpPixels"));
WKRetainPtr<WKBooleanRef> dumpPixelsValue = adoptWK(WKBooleanCreate(m_dumpPixels));
WKDictionaryAddItem(beginTestMessageBody.get(), dumpPixelsKey.get(), dumpPixelsValue.get());
WKRetainPtr<WKStringRef> useWaitToDumpWatchdogTimerKey = adoptWK(WKStringCreateWithUTF8CString("UseWaitToDumpWatchdogTimer"));
WKRetainPtr<WKBooleanRef> useWaitToDumpWatchdogTimerValue = adoptWK(WKBooleanCreate(TestController::shared().useWaitToDumpWatchdogTimer()));
WKDictionaryAddItem(beginTestMessageBody.get(), useWaitToDumpWatchdogTimerKey.get(), useWaitToDumpWatchdogTimerValue.get());
WKContextPostMessageToInjectedBundle(TestController::shared().context(), messageName.get(), beginTestMessageBody.get());
TestController::shared().runUntil(m_gotInitialResponse, TestController::ShortTimeout);
if (!m_gotInitialResponse) {
m_errorMessage = "Timed out waiting for initial response from web process\n";
m_webProcessIsUnresponsive = true;
goto end;
}
if (m_error)
goto end;
#if ENABLE(INSPECTOR)
if (shouldOpenWebInspector(m_pathOrURL.c_str()))
WKInspectorShow(WKPageGetInspector(TestController::shared().mainWebView()->page()));
#endif // ENABLE(INSPECTOR)
WKPageLoadURL(TestController::shared().mainWebView()->page(), m_url.get());
TestController::shared().runUntil(m_gotFinalMessage, TestController::shared().useWaitToDumpWatchdogTimer() ? TestController::LongTimeout : TestController::NoTimeout);
if (!m_gotFinalMessage) {
m_errorMessage = "Timed out waiting for final message from web process\n";
m_webProcessIsUnresponsive = true;
goto end;
}
if (m_error)
goto end;
dumpResults();
end:
#if ENABLE(INSPECTOR)
if (m_gotInitialResponse)
WKInspectorClose(WKPageGetInspector(TestController::shared().mainWebView()->page()));
#endif // ENABLE(INSPECTOR)
if (m_webProcessIsUnresponsive)
dumpWebProcessUnresponsiveness();
else if (!TestController::shared().resetStateToConsistentValues()) {
m_errorMessage = "Timed out loading about:blank before the next test";
dumpWebProcessUnresponsiveness();
}
}
