void eapMetaSync(char *host, char *userId, char *password)
/* eapMetaSync - Send JSON over to metadatabase at Stanford describing software, versions,
* steps, analysis runs, and the file relationships produced by these runs.. */
{
gHost = host;
gUserId = userId;
gPassword = password;
struct sqlConnection *conn = eapConnectReadWrite();
syncSoftware(conn);
syncSoftwareVersion(conn);
syncStep(conn);
sqlDisconnect(&conn);
}
void eapAddStep(char *pattern)
/* eapAddStep - Add a step to eapStep and related tables. This is just a small shortcut for doing
* it in SQL. You can only add steps defined in C code.. */
{
struct sqlConnection *conn = eapConnectReadWrite();
int i;
for (i=0; i<ArraySize(steps); ++i)
{
struct stepInit *init = &steps[i];
if (wildMatch(pattern, init->name))
{
if (clList)
puts(init->name);
else
initStep(conn, init);
}
}
}
void eapUpdateSoftware(char *software, char *notes)
/* eapUpdateSoftware - Get a new version of software.. */
{
char query[512];
struct sqlConnection *conn = eapConnectReadWrite();
char *version = clVersion;
if (version == NULL)
{
sqlSafef(query, sizeof(query),
"select version from eapSwVersion where software='%s' order by id desc", software);
version = sqlQuickString(conn, query);
if (version == NULL)
errAbort("Can't find existing version of %s, please use version option on command line",
software);
}
char *md5 = clMd5;
char md5Hex[33];
if (md5 == NULL)
{
eapMd5ForCommand(software, md5Hex);
md5 = md5Hex;
}
sqlSafef(query, sizeof(query),
"select count(*) from eapSwVersion where software='%s'"
" and version='%s' and md5='%s'", software, version, md5);
int existing = sqlQuickNum(conn, query);
if (existing > 0)
errAbort("Warn %d existing %s %s %s in eapSwVersion", existing, software, version, md5);
sqlSafef(query, sizeof(query),
"insert eapSwVersion (software, version, md5, redoPriority, notes) "
" values ('%s', '%s', '%s', %d, '%s')"
, software, version, md5, redoPriority, notes);
sqlUpdate(conn, query);
}
