void testGroup_constructChainForLink(CuTest *testCase) {
cactusGroupTestSetup();
//Create a link group and test function works!
Group *group3 = group_construct2(flower);
End *_5End = end_construct2(1, 1, flower);
End *_3End = end_construct2(0, 1, flower);
End *stubEnd = end_construct2(1, 0, flower);
end_setGroup(_5End, group3);
end_setGroup(_3End, group3);
end_setGroup(stubEnd, group3);
CuAssertTrue(testCase, group_isTangle(group3));
CuAssertTrue(testCase, group_getEndNumber(group3) == 3);
group_constructChainForLink(group3);
CuAssertTrue(testCase, group_isLink(group3));
Link *link = group_getLink(group3);
CuAssertTrue(testCase, link_get5End(link) == _5End);
CuAssertTrue(testCase, link_get3End(link) == _3End);
cactusGroupTestTeardown();
}
void processSequence(const char *fastaHeader, const char *string, int64_t length) {
/*
* Processes a sequence by adding it to the flower disk.
*/
End *end1;
End *end2;
Cap *cap1;
Cap *cap2;
MetaSequence *metaSequence;
Sequence *sequence;
//Now put the details in a flower.
metaSequence = metaSequence_construct(2, length, string, fastaHeader, event_getName(event), cactusDisk);
sequence = sequence_construct(metaSequence, flower);
end1 = end_construct2(0, isComplete, flower);
end2 = end_construct2(1, isComplete, flower);
cap1 = cap_construct2(end1, 1, 1, sequence);
cap2 = cap_construct2(end2, length + 2, 1, sequence);
cap_makeAdjacent(cap1, cap2);
totalSequenceNumber++;
}
static void cactusGroupTestSetup() {
cactusGroupTestTeardown();
cactusDisk = testCommon_getTemporaryCactusDisk();
flower = flower_construct(cactusDisk);
nestedFlower = flower_construct(cactusDisk);
end1 = end_construct2(0, 0, flower);
end2 = end_construct(0, flower);
end3 = end_construct(0, flower);
nestedEnd1 = end_copyConstruct(end1, nestedFlower);
nestedEnd2 = end_copyConstruct(end2, nestedFlower);
group = group_construct(flower, nestedFlower);
group2 = group_construct2(flower);
end4 = end_construct(0, flower);
}
