void bottomUp(stList *flowers, stKVDatabase *sequenceDatabase, Name referenceEventName,
bool isTop, stMatrix *(*generateSubstitutionMatrix)(double)) {
/*
* A reference thread between the two caps
* in each flower f may be broken into two in the children of f.
* Therefore, for each flower f first identify attached stub ends present in the children of f that are
* not present in f and copy them into f, reattaching the reference caps as needed.
*/
stList *caps = getCaps(flowers, referenceEventName);
for (int64_t i = stList_length(caps) - 1; i >= 0; i--) { //Start from end, as we add to this list.
setAdjacencyLengthsAndRecoverNewCapsAndBrokenAdjacencies(stList_get(caps, i), caps);
}
for(int64_t i=0; i<stList_length(flowers); i++) {
recoverBrokenAdjacencies(stList_get(flowers, i), caps, referenceEventName);
}
//Build the phylogenetic event trees for base calling.
segmentWriteFn_flowerToPhylogeneticTreeHash = stHash_construct2(NULL, (void (*)(void *))cleanupPhylogeneticTree);
for(int64_t i=0; i<stList_length(flowers); i++) {
Flower *flower = stList_get(flowers, i);
Event *refEvent = eventTree_getEvent(flower_getEventTree(flower), referenceEventName);
assert(refEvent != NULL);
stHash_insert(segmentWriteFn_flowerToPhylogeneticTreeHash, flower, getPhylogeneticTreeRootedAtGivenEvent(refEvent, generateSubstitutionMatrix));
}
if (isTop) {
stList *threadStrings = buildRecursiveThreadsInList(sequenceDatabase, caps, segmentWriteFn,
terminalAdjacencyWriteFn);
assert(stList_length(threadStrings) == stList_length(caps));
int64_t nonTrivialSeqIndex = 0, trivialSeqIndex = stList_length(threadStrings); //These are used as indices for the names of trivial and non-trivial sequences.
for (int64_t i = 0; i < stList_length(threadStrings); i++) {
Cap *cap = stList_get(caps, i);
assert(cap_getStrand(cap));
assert(!cap_getSide(cap));
Flower *flower = end_getFlower(cap_getEnd(cap));
char *threadString = stList_get(threadStrings, i);
bool trivialString = isTrivialString(&threadString); //This alters the original string
MetaSequence *metaSequence = addMetaSequence(flower, cap, trivialString ? trivialSeqIndex++ : nonTrivialSeqIndex++,
threadString, trivialString);
free(threadString);
int64_t endCoordinate = setCoordinates(flower, metaSequence, cap, metaSequence_getStart(metaSequence) - 1);
(void) endCoordinate;
assert(endCoordinate == metaSequence_getLength(metaSequence) + metaSequence_getStart(metaSequence));
}
stList_setDestructor(threadStrings, NULL); //The strings are already cleaned up by the above loop
stList_destruct(threadStrings);
} else {
buildRecursiveThreads(sequenceDatabase, caps, segmentWriteFn, terminalAdjacencyWriteFn);
}
stHash_destruct(segmentWriteFn_flowerToPhylogeneticTreeHash);
stList_destruct(caps);
}
HandleType FrameBuffer::createColorBuffer(int p_width, int p_height,
GLenum p_internalFormat)
{
emugl::Mutex::AutoLock mutex(m_lock);
HandleType ret = 0;
ColorBufferPtr cb(ColorBuffer::create(
getDisplay(),
p_width,
p_height,
p_internalFormat,
getCaps().has_eglimage_texture_2d,
m_colorBufferHelper));
if (cb.Ptr() != NULL) {
ret = genHandle();
m_colorbuffers[ret].cb = cb;
m_colorbuffers[ret].refcount = 1;
}
return ret;
}
status_t BnHDCP::onTransact(
uint32_t code, const Parcel &data, Parcel *reply, uint32_t flags) {
switch (code) {
case HDCP_SET_OBSERVER:
{
CHECK_INTERFACE(IHDCP, data, reply);
sp<IHDCPObserver> observer =
interface_cast<IHDCPObserver>(data.readStrongBinder());
reply->writeInt32(setObserver(observer));
return OK;
}
case HDCP_INIT_ASYNC:
{
CHECK_INTERFACE(IHDCP, data, reply);
const char *host = data.readCString();
unsigned port = data.readInt32();
reply->writeInt32(initAsync(host, port));
return OK;
}
case HDCP_SHUTDOWN_ASYNC:
{
CHECK_INTERFACE(IHDCP, data, reply);
reply->writeInt32(shutdownAsync());
return OK;
}
case HDCP_GET_CAPS:
{
CHECK_INTERFACE(IHDCP, data, reply);
reply->writeInt32(getCaps());
return OK;
}
case HDCP_ENCRYPT:
{
size_t size = data.readInt32();
size_t bufSize = 2 * size;
// watch out for overflow
void *inData = NULL;
if (bufSize > size) {
inData = malloc(bufSize);
}
if (inData == NULL) {
reply->writeInt32(ERROR_OUT_OF_RANGE);
return OK;
}
void *outData = (uint8_t *)inData + size;
data.read(inData, size);
uint32_t streamCTR = data.readInt32();
uint64_t inputCTR;
status_t err = encrypt(inData, size, streamCTR, &inputCTR, outData);
reply->writeInt32(err);
if (err == OK) {
reply->writeInt64(inputCTR);
reply->write(outData, size);
}
free(inData);
inData = outData = NULL;
return OK;
}
case HDCP_ENCRYPT_NATIVE:
{
CHECK_INTERFACE(IHDCP, data, reply);
sp<GraphicBuffer> graphicBuffer = new GraphicBuffer();
data.read(*graphicBuffer);
size_t offset = data.readInt32();
size_t size = data.readInt32();
uint32_t streamCTR = data.readInt32();
void *outData = NULL;
uint64_t inputCTR;
status_t err = ERROR_OUT_OF_RANGE;
outData = malloc(size);
if (outData != NULL) {
err = encryptNative(graphicBuffer, offset, size,
streamCTR, &inputCTR, outData);
}
reply->writeInt32(err);
if (err == OK) {
reply->writeInt64(inputCTR);
reply->write(outData, size);
}
free(outData);
outData = NULL;
return OK;
}
case HDCP_DECRYPT:
{
size_t size = data.readInt32();
size_t bufSize = 2 * size;
// watch out for overflow
void *inData = NULL;
if (bufSize > size) {
inData = malloc(bufSize);
}
if (inData == NULL) {
reply->writeInt32(ERROR_OUT_OF_RANGE);
return OK;
}
void *outData = (uint8_t *)inData + size;
data.read(inData, size);
uint32_t streamCTR = data.readInt32();
uint64_t inputCTR = data.readInt64();
status_t err = decrypt(inData, size, streamCTR, inputCTR, outData);
reply->writeInt32(err);
if (err == OK) {
reply->write(outData, size);
}
free(inData);
inData = outData = NULL;
return OK;
}
default:
return BBinder::onTransact(code, data, reply, flags);
}
}
int GLESv2Context::getMaxTexUnits() {
return getCaps()->maxTexImageUnits;
}
bool ValidationContext::getQueryParameterInfo(GLenum pname, GLenum *type, unsigned int *numParams)
{
if (pname >= GL_DRAW_BUFFER0_EXT && pname <= GL_DRAW_BUFFER15_EXT)
{
*type = GL_INT;
*numParams = 1;
return true;
}
// Please note: the query type returned for DEPTH_CLEAR_VALUE in this implementation
// is FLOAT rather than INT, as would be suggested by the GL ES 2.0 spec. This is due
// to the fact that it is stored internally as a float, and so would require conversion
// if returned from Context::getIntegerv. Since this conversion is already implemented
// in the case that one calls glGetIntegerv to retrieve a float-typed state variable, we
// place DEPTH_CLEAR_VALUE with the floats. This should make no difference to the calling
// application.
switch (pname)
{
case GL_COMPRESSED_TEXTURE_FORMATS:
{
*type = GL_INT;
*numParams = static_cast<unsigned int>(getCaps().compressedTextureFormats.size());
return true;
}
case GL_PROGRAM_BINARY_FORMATS_OES:
{
*type = GL_INT;
*numParams = static_cast<unsigned int>(getCaps().programBinaryFormats.size());
return true;
}
case GL_SHADER_BINARY_FORMATS:
{
*type = GL_INT;
*numParams = static_cast<unsigned int>(getCaps().shaderBinaryFormats.size());
return true;
}
case GL_MAX_VERTEX_ATTRIBS:
case GL_MAX_VERTEX_UNIFORM_VECTORS:
case GL_MAX_VARYING_VECTORS:
case GL_MAX_COMBINED_TEXTURE_IMAGE_UNITS:
case GL_MAX_VERTEX_TEXTURE_IMAGE_UNITS:
case GL_MAX_TEXTURE_IMAGE_UNITS:
case GL_MAX_FRAGMENT_UNIFORM_VECTORS:
case GL_MAX_RENDERBUFFER_SIZE:
case GL_MAX_COLOR_ATTACHMENTS_EXT:
case GL_MAX_DRAW_BUFFERS_EXT:
case GL_NUM_SHADER_BINARY_FORMATS:
case GL_NUM_COMPRESSED_TEXTURE_FORMATS:
case GL_ARRAY_BUFFER_BINDING:
// case GL_FRAMEBUFFER_BINDING: // equivalent to DRAW_FRAMEBUFFER_BINDING_ANGLE
case GL_DRAW_FRAMEBUFFER_BINDING_ANGLE:
case GL_READ_FRAMEBUFFER_BINDING_ANGLE:
case GL_RENDERBUFFER_BINDING:
case GL_CURRENT_PROGRAM:
case GL_PACK_ALIGNMENT:
case GL_PACK_REVERSE_ROW_ORDER_ANGLE:
case GL_UNPACK_ALIGNMENT:
case GL_GENERATE_MIPMAP_HINT:
case GL_FRAGMENT_SHADER_DERIVATIVE_HINT_OES:
case GL_RED_BITS:
case GL_GREEN_BITS:
case GL_BLUE_BITS:
case GL_ALPHA_BITS:
case GL_DEPTH_BITS:
case GL_STENCIL_BITS:
case GL_ELEMENT_ARRAY_BUFFER_BINDING:
case GL_CULL_FACE_MODE:
case GL_FRONT_FACE:
case GL_ACTIVE_TEXTURE:
case GL_STENCIL_FUNC:
case GL_STENCIL_VALUE_MASK:
case GL_STENCIL_REF:
case GL_STENCIL_FAIL:
case GL_STENCIL_PASS_DEPTH_FAIL:
case GL_STENCIL_PASS_DEPTH_PASS:
case GL_STENCIL_BACK_FUNC:
case GL_STENCIL_BACK_VALUE_MASK:
case GL_STENCIL_BACK_REF:
case GL_STENCIL_BACK_FAIL:
case GL_STENCIL_BACK_PASS_DEPTH_FAIL:
case GL_STENCIL_BACK_PASS_DEPTH_PASS:
case GL_DEPTH_FUNC:
case GL_BLEND_SRC_RGB:
case GL_BLEND_SRC_ALPHA:
case GL_BLEND_DST_RGB:
case GL_BLEND_DST_ALPHA:
case GL_BLEND_EQUATION_RGB:
case GL_BLEND_EQUATION_ALPHA:
case GL_STENCIL_WRITEMASK:
case GL_STENCIL_BACK_WRITEMASK:
case GL_STENCIL_CLEAR_VALUE:
case GL_SUBPIXEL_BITS:
case GL_MAX_TEXTURE_SIZE:
case GL_MAX_CUBE_MAP_TEXTURE_SIZE:
case GL_SAMPLE_BUFFERS:
case GL_SAMPLES:
case GL_IMPLEMENTATION_COLOR_READ_TYPE:
case GL_IMPLEMENTATION_COLOR_READ_FORMAT:
case GL_TEXTURE_BINDING_2D:
case GL_TEXTURE_BINDING_CUBE_MAP:
case GL_RESET_NOTIFICATION_STRATEGY_EXT:
case GL_NUM_PROGRAM_BINARY_FORMATS_OES:
{
*type = GL_INT;
*numParams = 1;
return true;
}
case GL_MAX_SAMPLES_ANGLE:
{
if (!getExtensions().framebufferMultisample)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
}
case GL_MAX_VIEWPORT_DIMS:
{
*type = GL_INT;
*numParams = 2;
return true;
}
case GL_VIEWPORT:
case GL_SCISSOR_BOX:
{
*type = GL_INT;
*numParams = 4;
return true;
}
case GL_SHADER_COMPILER:
case GL_SAMPLE_COVERAGE_INVERT:
case GL_DEPTH_WRITEMASK:
case GL_CULL_FACE: // CULL_FACE through DITHER are natural to IsEnabled,
case GL_POLYGON_OFFSET_FILL: // but can be retrieved through the Get{Type}v queries.
case GL_SAMPLE_ALPHA_TO_COVERAGE: // For this purpose, they are treated here as
// bool-natural
case GL_SAMPLE_COVERAGE:
case GL_SCISSOR_TEST:
case GL_STENCIL_TEST:
case GL_DEPTH_TEST:
case GL_BLEND:
case GL_DITHER:
case GL_CONTEXT_ROBUST_ACCESS_EXT:
{
*type = GL_BOOL;
*numParams = 1;
return true;
}
case GL_COLOR_WRITEMASK:
{
*type = GL_BOOL;
*numParams = 4;
return true;
}
case GL_POLYGON_OFFSET_FACTOR:
case GL_POLYGON_OFFSET_UNITS:
case GL_SAMPLE_COVERAGE_VALUE:
case GL_DEPTH_CLEAR_VALUE:
case GL_LINE_WIDTH:
{
*type = GL_FLOAT;
*numParams = 1;
return true;
}
case GL_ALIASED_LINE_WIDTH_RANGE:
case GL_ALIASED_POINT_SIZE_RANGE:
case GL_DEPTH_RANGE:
{
*type = GL_FLOAT;
*numParams = 2;
return true;
}
case GL_COLOR_CLEAR_VALUE:
case GL_BLEND_COLOR:
{
*type = GL_FLOAT;
*numParams = 4;
return true;
}
case GL_MAX_TEXTURE_MAX_ANISOTROPY_EXT:
if (!getExtensions().maxTextureAnisotropy)
{
return false;
}
*type = GL_FLOAT;
*numParams = 1;
return true;
case GL_TIMESTAMP_EXT:
if (!getExtensions().disjointTimerQuery)
{
return false;
}
*type = GL_INT_64_ANGLEX;
*numParams = 1;
return true;
case GL_GPU_DISJOINT_EXT:
if (!getExtensions().disjointTimerQuery)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
case GL_COVERAGE_MODULATION_CHROMIUM:
if (!getExtensions().framebufferMixedSamples)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
case GL_TEXTURE_BINDING_EXTERNAL_OES:
if (!getExtensions().eglStreamConsumerExternal && !getExtensions().eglImageExternal)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
}
if (getExtensions().debug)
{
switch (pname)
{
case GL_DEBUG_LOGGED_MESSAGES:
case GL_DEBUG_NEXT_LOGGED_MESSAGE_LENGTH:
case GL_DEBUG_GROUP_STACK_DEPTH:
case GL_MAX_DEBUG_MESSAGE_LENGTH:
case GL_MAX_DEBUG_LOGGED_MESSAGES:
case GL_MAX_DEBUG_GROUP_STACK_DEPTH:
case GL_MAX_LABEL_LENGTH:
*type = GL_INT;
*numParams = 1;
return true;
case GL_DEBUG_OUTPUT_SYNCHRONOUS:
case GL_DEBUG_OUTPUT:
*type = GL_BOOL;
*numParams = 1;
return true;
}
}
if (getExtensions().multisampleCompatibility)
{
switch (pname)
{
case GL_MULTISAMPLE_EXT:
case GL_SAMPLE_ALPHA_TO_ONE_EXT:
*type = GL_BOOL;
*numParams = 1;
return true;
}
}
if (getExtensions().pathRendering)
{
switch (pname)
{
case GL_PATH_MODELVIEW_MATRIX_CHROMIUM:
case GL_PATH_PROJECTION_MATRIX_CHROMIUM:
*type = GL_FLOAT;
*numParams = 16;
return true;
}
}
if (getExtensions().bindGeneratesResource)
{
switch (pname)
{
case GL_BIND_GENERATES_RESOURCE_CHROMIUM:
*type = GL_BOOL;
*numParams = 1;
return true;
}
}
if (getExtensions().sRGBWriteControl)
{
switch (pname)
{
case GL_FRAMEBUFFER_SRGB_EXT:
*type = GL_BOOL;
*numParams = 1;
return true;
}
}
// Check for ES3.0+ parameter names which are also exposed as ES2 extensions
switch (pname)
{
case GL_PACK_ROW_LENGTH:
case GL_PACK_SKIP_ROWS:
case GL_PACK_SKIP_PIXELS:
if ((getClientMajorVersion() < 3) && !getExtensions().packSubimage)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
case GL_UNPACK_ROW_LENGTH:
case GL_UNPACK_SKIP_ROWS:
case GL_UNPACK_SKIP_PIXELS:
if ((getClientMajorVersion() < 3) && !getExtensions().unpackSubimage)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
case GL_VERTEX_ARRAY_BINDING:
if ((getClientMajorVersion() < 3) && !getExtensions().vertexArrayObject)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
case GL_PIXEL_PACK_BUFFER_BINDING:
case GL_PIXEL_UNPACK_BUFFER_BINDING:
if ((getClientMajorVersion() < 3) && !getExtensions().pixelBufferObject)
{
return false;
}
*type = GL_INT;
*numParams = 1;
return true;
}
if (getClientVersion() < Version(3, 0))
{
return false;
}
// Check for ES3.0+ parameter names
switch (pname)
{
case GL_MAX_UNIFORM_BUFFER_BINDINGS:
case GL_UNIFORM_BUFFER_OFFSET_ALIGNMENT:
case GL_UNIFORM_BUFFER_BINDING:
case GL_TRANSFORM_FEEDBACK_BINDING:
case GL_TRANSFORM_FEEDBACK_BUFFER_BINDING:
case GL_COPY_READ_BUFFER_BINDING:
case GL_COPY_WRITE_BUFFER_BINDING:
case GL_SAMPLER_BINDING:
case GL_READ_BUFFER:
case GL_TEXTURE_BINDING_3D:
case GL_TEXTURE_BINDING_2D_ARRAY:
case GL_MAX_3D_TEXTURE_SIZE:
case GL_MAX_ARRAY_TEXTURE_LAYERS:
case GL_MAX_VERTEX_UNIFORM_BLOCKS:
case GL_MAX_FRAGMENT_UNIFORM_BLOCKS:
case GL_MAX_COMBINED_UNIFORM_BLOCKS:
case GL_MAX_VERTEX_OUTPUT_COMPONENTS:
case GL_MAX_FRAGMENT_INPUT_COMPONENTS:
case GL_MAX_VARYING_COMPONENTS:
case GL_MAX_VERTEX_UNIFORM_COMPONENTS:
case GL_MAX_FRAGMENT_UNIFORM_COMPONENTS:
case GL_MIN_PROGRAM_TEXEL_OFFSET:
case GL_MAX_PROGRAM_TEXEL_OFFSET:
case GL_NUM_EXTENSIONS:
case GL_MAJOR_VERSION:
case GL_MINOR_VERSION:
case GL_MAX_ELEMENTS_INDICES:
case GL_MAX_ELEMENTS_VERTICES:
case GL_MAX_TRANSFORM_FEEDBACK_INTERLEAVED_COMPONENTS:
case GL_MAX_TRANSFORM_FEEDBACK_SEPARATE_ATTRIBS:
case GL_MAX_TRANSFORM_FEEDBACK_SEPARATE_COMPONENTS:
case GL_UNPACK_IMAGE_HEIGHT:
case GL_UNPACK_SKIP_IMAGES:
{
*type = GL_INT;
*numParams = 1;
return true;
}
case GL_MAX_ELEMENT_INDEX:
case GL_MAX_UNIFORM_BLOCK_SIZE:
case GL_MAX_COMBINED_VERTEX_UNIFORM_COMPONENTS:
case GL_MAX_COMBINED_FRAGMENT_UNIFORM_COMPONENTS:
case GL_MAX_SERVER_WAIT_TIMEOUT:
{
*type = GL_INT_64_ANGLEX;
*numParams = 1;
return true;
}
case GL_TRANSFORM_FEEDBACK_ACTIVE:
case GL_TRANSFORM_FEEDBACK_PAUSED:
case GL_PRIMITIVE_RESTART_FIXED_INDEX:
case GL_RASTERIZER_DISCARD:
{
*type = GL_BOOL;
*numParams = 1;
return true;
}
case GL_MAX_TEXTURE_LOD_BIAS:
{
*type = GL_FLOAT;
*numParams = 1;
return true;
}
}
if (getClientVersion() < Version(3, 1))
{
return false;
}
switch (pname)
{
case GL_MAX_FRAMEBUFFER_WIDTH:
case GL_MAX_FRAMEBUFFER_HEIGHT:
case GL_MAX_FRAMEBUFFER_SAMPLES:
case GL_MAX_SAMPLE_MASK_WORDS:
case GL_MAX_COLOR_TEXTURE_SAMPLES:
case GL_MAX_DEPTH_TEXTURE_SAMPLES:
case GL_MAX_INTEGER_SAMPLES:
case GL_MAX_VERTEX_ATTRIB_RELATIVE_OFFSET:
case GL_MAX_VERTEX_ATTRIB_BINDINGS:
case GL_MAX_VERTEX_ATTRIB_STRIDE:
case GL_MAX_VERTEX_ATOMIC_COUNTER_BUFFERS:
case GL_MAX_VERTEX_ATOMIC_COUNTERS:
case GL_MAX_VERTEX_IMAGE_UNIFORMS:
case GL_MAX_VERTEX_SHADER_STORAGE_BLOCKS:
case GL_MAX_FRAGMENT_ATOMIC_COUNTER_BUFFERS:
case GL_MAX_FRAGMENT_ATOMIC_COUNTERS:
case GL_MAX_FRAGMENT_IMAGE_UNIFORMS:
case GL_MAX_FRAGMENT_SHADER_STORAGE_BLOCKS:
case GL_MIN_PROGRAM_TEXTURE_GATHER_OFFSET:
case GL_MAX_PROGRAM_TEXTURE_GATHER_OFFSET:
case GL_MAX_COMPUTE_WORK_GROUP_INVOCATIONS:
case GL_MAX_COMPUTE_UNIFORM_BLOCKS:
case GL_MAX_COMPUTE_TEXTURE_IMAGE_UNITS:
case GL_MAX_COMPUTE_SHARED_MEMORY_SIZE:
case GL_MAX_COMPUTE_UNIFORM_COMPONENTS:
case GL_MAX_COMPUTE_ATOMIC_COUNTER_BUFFERS:
case GL_MAX_COMPUTE_ATOMIC_COUNTERS:
case GL_MAX_COMPUTE_IMAGE_UNIFORMS:
case GL_MAX_COMBINED_COMPUTE_UNIFORM_COMPONENTS:
case GL_MAX_COMPUTE_SHADER_STORAGE_BLOCKS:
case GL_MAX_COMBINED_SHADER_OUTPUT_RESOURCES:
case GL_MAX_UNIFORM_LOCATIONS:
case GL_MAX_ATOMIC_COUNTER_BUFFER_BINDINGS:
case GL_MAX_ATOMIC_COUNTER_BUFFER_SIZE:
case GL_MAX_COMBINED_ATOMIC_COUNTER_BUFFERS:
case GL_MAX_COMBINED_ATOMIC_COUNTERS:
case GL_MAX_IMAGE_UNITS:
case GL_MAX_COMBINED_IMAGE_UNIFORMS:
case GL_MAX_SHADER_STORAGE_BUFFER_BINDINGS:
case GL_MAX_COMBINED_SHADER_STORAGE_BLOCKS:
case GL_SHADER_STORAGE_BUFFER_OFFSET_ALIGNMENT:
*type = GL_INT;
*numParams = 1;
return true;
case GL_MAX_SHADER_STORAGE_BLOCK_SIZE:
*type = GL_INT_64_ANGLEX;
*numParams = 1;
return true;
}
return false;
}
