// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void JumbleOrientations::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
QVector<size_t> cDims(1, 1);
// Cell Data
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
tempPath.update(getFeatureIdsArrayPath().getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getCellEulerAnglesArrayName() );
m_CellEulerAnglesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, tempPath, 0.0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
// Feature Data
cDims[0] = 1;
m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_FeatureEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getFeatureEulerAnglesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureEulerAngles = m_FeatureEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
tempPath.update(getFeaturePhasesArrayPath().getDataContainerName(), getFeaturePhasesArrayPath().getAttributeMatrixName(), getAvgQuatsArrayName() );
m_AvgQuatsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgQuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgQuats = m_AvgQuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void CopyFeatureArrayToElementArray::dataCheck()
{
setErrorCondition(0);
if (getCreatedArrayName().isEmpty() == true)
{
setErrorCondition(-11002);
notifyErrorMessage(getHumanLabel(), "The new Element array name must be set", getErrorCondition());
return;
}
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
m_InArrayPtr = getDataContainerArray()->getPrereqIDataArrayFromPath<IDataArray, AbstractFilter>(this, getSelectedFeatureArrayPath()); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
DataArrayPath tempPath(getFeatureIdsArrayPath().getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), "");
getDataContainerArray()->getPrereqAttributeMatrixFromPath<AbstractFilter>(this, tempPath, -301);
if(getErrorCondition() < 0 ) { return; }
tempPath.update(getFeatureIdsArrayPath().getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getCreatedArrayName());
TemplateHelpers::CreateNonPrereqArrayFromArrayType()(this, tempPath, m_InArrayPtr.lock()->getComponentDimensions(), m_InArrayPtr.lock());
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindFeatureReferenceCAxisMisorientations::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeatureIdsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getCellPhasesArrayPath()); }
tempPath.update(m_AvgCAxesArrayPath.getDataContainerName(), getAvgCAxesArrayPath().getAttributeMatrixName(), getFeatureAvgCAxisMisorientationsArrayName() );
m_FeatureAvgCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureAvgCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureAvgCAxisMisorientations = m_FeatureAvgCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_AvgCAxesArrayPath.getDataContainerName(), getAvgCAxesArrayPath().getAttributeMatrixName(), getFeatureStdevCAxisMisorientationsArrayName() );
m_FeatureStdevCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureStdevCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureStdevCAxisMisorientations = m_FeatureStdevCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getFeatureReferenceCAxisMisorientationsArrayName() );
m_FeatureReferenceCAxisMisorientationsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureReferenceCAxisMisorientationsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureReferenceCAxisMisorientations = m_FeatureReferenceCAxisMisorientationsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 3;
m_AvgCAxesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAvgCAxesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgCAxesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgCAxes = m_AvgCAxesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
cDims[0] = 4;
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgCAxes::dataCheck()
{
setErrorCondition(0);
QVector<DataArrayPath> dataArrayPaths;
QVector<size_t> cDims(1, 4);
m_QuatsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getQuatsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_QuatsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Quats = m_QuatsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getQuatsArrayPath()); }
cDims[0] = 1;
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeatureIdsArrayPath()); }
cDims[0] = 3;
m_AvgCAxesPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, getAvgCAxesArrayPath(), 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_AvgCAxesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AvgCAxes = m_AvgCAxesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ExtractFlaggedFeatures::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFlaggedFeaturesArrayPath(reader->readDataArrayPath("FlaggedFeaturesArrayPath", getFlaggedFeaturesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void SPParksWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindBoundaryCells::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setBoundaryCellsArrayName(reader->readString("BoundaryCellsArrayName", getBoundaryCellsArrayName() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgCAxes::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setAvgCAxesArrayPath(reader->readDataArrayPath("AvgCAxesArrayPath", getAvgCAxesArrayPath()));
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
void AvizoUniformCoordinateWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
setWriteBinaryFile( reader->readValue("WriteBinaryFile", getWriteBinaryFile()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ErodeDilateCoordinationNumber::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setCoordinationNumber( reader->readValue("CoordinationNumber", getCoordinationNumber()) );
setLoop( reader->readValue("Loop", getLoop()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void CopyFeatureArrayToElementArray::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setSelectedFeatureArrayPath(reader->readDataArrayPath( "SelectedFeatureArrayPath", getSelectedFeatureArrayPath() ) );
setCreatedArrayName(reader->readString("CreatedArrayName", getCreatedArrayName() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::dataCheck()
{
setErrorCondition(0);
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
if (getOutputFile().isEmpty() == true)
{
QString ss = QObject::tr("The output file must be set");
setErrorCondition(-1);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
QFileInfo fi(getOutputFile());
QDir parentPath = fi.path();
if (parentPath.exists() == false)
{
QString ss = QObject::tr("The directory path for the output file does not exist. DREAM.3D will attempt to create this path during execution of the filter");
notifyWarningMessage(getHumanLabel(), ss, -1);
}
QVector<DataArrayPath> cellDataArrayPaths;
QVector<DataArrayPath> ensembleDataArrayPaths;
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getFeatureIdsArrayPath()); }
m_CellPhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getCellPhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellPhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellPhases = m_CellPhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getCellPhasesArrayPath()); }
m_CrystalStructuresPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<uint32_t>, AbstractFilter>(this, getCrystalStructuresArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CrystalStructuresPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CrystalStructures = m_CrystalStructuresPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getCrystalStructuresArrayPath()); }
m_NumFeaturesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getNumFeaturesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_NumFeaturesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NumFeatures = m_NumFeaturesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getNumFeaturesArrayPath()); }
m_MaterialNamePtr = getDataContainerArray()->getPrereqArrayFromPath<StringDataArray, AbstractFilter>(this, getMaterialNameArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if(getErrorCondition() >= 0) { ensembleDataArrayPaths.push_back(getMaterialNameArrayPath()); }
cDims[0] = 3;
m_CellEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCellEulerAnglesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CellEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_CellEulerAngles = m_CellEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { cellDataArrayPaths.push_back(getCellEulerAnglesArrayPath()); }
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, cellDataArrayPaths);
getDataContainerArray()->validateNumberOfTuples<AbstractFilter>(this, ensembleDataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void LosAlamosFFTWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindBoundaryCells::dataCheck()
{
setErrorCondition(0);
DataArrayPath tempPath;
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
tempPath.update(getFeatureIdsArrayPath().getDataContainerName(), getFeatureIdsArrayPath().getAttributeMatrixName(), getBoundaryCellsArrayName() );
m_BoundaryCellsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int8_t>, AbstractFilter, int8_t>(this, tempPath, 0, cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_BoundaryCellsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_BoundaryCells = m_BoundaryCellsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void JumbleOrientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setAvgQuatsArrayName(reader->readString("AvgQuatsArrayName", getAvgQuatsArrayName() ) );
setFeatureEulerAnglesArrayPath(reader->readDataArrayPath("FeatureEulerAnglesArrayPath", getFeatureEulerAnglesArrayPath() ) );
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setCellEulerAnglesArrayName(reader->readString("CellEulerAnglesArrayName", getCellEulerAnglesArrayName() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
void FindKernelAvgMisorientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setKernelAverageMisorientationsArrayName(reader->readString("KernelAverageMisorientationsArrayName", getKernelAverageMisorientationsArrayName() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setKernelSize( reader->readIntVec3("KernelSize", getKernelSize() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindAvgOrientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setAvgEulerAnglesArrayPath(reader->readDataArrayPath("AvgEulerAnglesArrayPath", getAvgEulerAnglesArrayPath() ) );
setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MinSize::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setNumCellsArrayPath(reader->readDataArrayPath("NumCellsArrayPath", getNumCellsArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setMinAllowedFeatureSize( reader->readValue("MinAllowedFeatureSize", getMinAllowedFeatureSize()) );
setApplyToSinglePhase( reader->readValue("ApplyToSinglePhase", getApplyToSinglePhase() ) );
setPhaseNumber( reader->readValue("PhaseNumber", getPhaseNumber() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ErodeDilateBadData::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setDirection( reader->readValue("Direction", getDirection()) );
setNumIterations( reader->readValue("NumIterations", getNumIterations()) );
setXDirOn(reader->readValue("XDirOn", getXDirOn()) );
setYDirOn(reader->readValue("YDirOn", getYDirOn()) );
setZDirOn(reader->readValue("ZDirOn", getZDirOn()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
void FindFeatureReferenceCAxisMisorientations::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeatureReferenceCAxisMisorientationsArrayName(reader->readString("FeatureReferenceCAxisMisorientationsArrayName", getFeatureReferenceCAxisMisorientationsArrayName() ) );
setFeatureStdevCAxisMisorientationsArrayName(reader->readString("FeatureStdevCAxisMisorientationsArrayName", getFeatureStdevCAxisMisorientationsArrayName() ) );
setFeatureAvgCAxisMisorientationsArrayName(reader->readString("FeatureAvgCAxisMisorientationsArrayName", getFeatureAvgCAxisMisorientationsArrayName() ) );
setQuatsArrayPath(reader->readDataArrayPath("QuatsArrayPath", getQuatsArrayPath() ) );
setAvgCAxesArrayPath(reader->readDataArrayPath("AvgCAxesArrayPath", getAvgCAxesArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void INLWriter::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellEulerAnglesArrayPath(reader->readDataArrayPath("CellEulerAnglesArrayPath", getCellEulerAnglesArrayPath() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setCellPhasesArrayPath(reader->readDataArrayPath("CellPhasesArrayPath", getCellPhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setNumFeaturesArrayPath(reader->readDataArrayPath("NumFeaturesArrayPath", getNumFeaturesArrayPath() ) );
setMaterialNameArrayPath(reader->readDataArrayPath("MaterialNameArrayPath", getMaterialNameArrayPath()));
setOutputFile( reader->readString( "OutputFile", getOutputFile() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void ChangeResolution::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setNewDataContainerName( reader->readString("NewDataContainerName", getNewDataContainerName() ) );
setCellAttributeMatrixPath( reader->readDataArrayPath("CellAttributeMatrixPath", getCellAttributeMatrixPath() ) );
setCellFeatureAttributeMatrixPath( reader->readDataArrayPath("CellFeatureAttributeMatrixPath", getCellFeatureAttributeMatrixPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setResolution( reader->readFloatVec3("Resolution", getResolution() ) );
setRenumberFeatures( reader->readValue("RenumberFeatures", getRenumberFeatures()) );
setSaveAsNewDataContainer( reader->readValue("SaveAsNewDataContainer", getSaveAsNewDataContainer()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindEllipsoidError::dataCheck()
{
DataArrayPath tempPath;
setErrorCondition(0);
QVector<size_t> dims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = getDataContainerArray()->getDataContainer(getFeatureIdsArrayPath().getDataContainerName())->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image.get()) { return; }
dims[0] = 3;
m_CentroidsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCentroidsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CentroidsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Centroids = m_CentroidsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
m_AxisEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAxisEulerAnglesArrayPath(), dims);
if( NULL != m_AxisEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AxisEulerAngles = m_AxisEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
m_AxisLengthsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAxisLengthsArrayPath(), dims);
if( NULL != m_AxisLengthsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AxisLengths = m_AxisLengthsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 1;
m_NumCellsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getNumCellsArrayPath(), dims);
if( NULL != m_NumCellsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NumCells = m_NumCellsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if (m_WriteIdealEllipseFeatureIds == true)
{
dims[0] = 1;
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), m_FeatureIdsArrayPath.getAttributeMatrixName(), getIdealFeatureIdsArrayName() );
m_IdealFeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_IdealFeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_IdealFeatureIds = m_IdealFeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
dims[0] = 1;
tempPath.update(m_NumCellsArrayPath.getDataContainerName(), m_NumCellsArrayPath.getAttributeMatrixName(), getEllipsoidErrorArrayName() );
m_EllipsoidErrorPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_EllipsoidErrorPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_EllipsoidError = m_EllipsoidErrorPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindNeighbors::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellFeatureAttributeMatrixPath(reader->readDataArrayPath("CellFeatureAttributeMatrixPath", getCellFeatureAttributeMatrixPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setBoundaryCellsArrayName(reader->readString("BoundaryCellsArrayName", getBoundaryCellsArrayName() ) );
setSurfaceFeaturesArrayName(reader->readString("SurfaceFeaturesArrayName", getSurfaceFeaturesArrayName() ) );
setStoreBoundaryCells(reader->readValue("StoreBoundaryCells", getStoreBoundaryCells() ) );
setStoreSurfaceFeatures(reader->readValue("StoreSurfaceFeatures", getStoreSurfaceFeatures() ) );
setNumNeighborsArrayName(reader->readString("NumNeighborsArrayName", getNumNeighborsArrayName() ) );
setNeighborListArrayName(reader->readString("NeighborListArrayName", getNeighborListArrayName() ) );
setSharedSurfaceAreaListArrayName(reader->readString("SharedSurfaceAreaListArrayName", getSharedSurfaceAreaListArrayName() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FeatureInfoReader::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellAttributeMatrixName(reader->readDataArrayPath("CellAttributeMatrixName", getCellAttributeMatrixName() ) );
setCellFeatureAttributeMatrixName(reader->readString("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName() ) );
setFeatureEulerAnglesArrayName(reader->readString("FeatureEulerAnglesArrayName", getFeatureEulerAnglesArrayName() ) );
setFeaturePhasesArrayName(reader->readString("FeaturePhasesArrayName", getFeaturePhasesArrayName() ) );
setCellEulerAnglesArrayName(reader->readString("CellEulerAnglesArrayName", getCellEulerAnglesArrayName() ) );
setCellPhasesArrayName(reader->readString("CellPhasesArrayName", getCellPhasesArrayName() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setInputFile( reader->readString( "InputFile", getInputFile() ) );
setCreateCellLevelArrays( reader->readValue("CreateCellLevelArrays", getCreateCellLevelArrays()) );
setRenumberFeatures( reader->readValue("RenumberFeatures", getRenumberFeatures()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindEllipsoidError::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellFeatureAttributeMatrixName(reader->readDataArrayPath("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName()));
setCentroidsArrayPath(reader->readDataArrayPath("CentroidsArrayPath", getCentroidsArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setAxisEulerAnglesArrayPath(reader->readDataArrayPath("AxisEulerAnglesArrayPath", getAxisEulerAnglesArrayPath()));
setNumCellsArrayPath(reader->readDataArrayPath("NumCellsArrayPath", getNumCellsArrayPath()));
setAxisLengthsArrayPath(reader->readDataArrayPath("AxisLengthsArrayPath", getAxisLengthsArrayPath()));
setIdealFeatureIdsArrayName(reader->readString("IdealFeatureIdsArrayName", getIdealFeatureIdsArrayName() ) );
setEllipsoidErrorArrayName(reader->readString("EllipsoidErrrorArrayName", getEllipsoidErrorArrayName() ) );
setWriteIdealEllipseFeatureIds(reader->readValue("WriteIdealEllipseFeatureIds", getWriteIdealEllipseFeatureIds() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MergeTwins::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
GroupFeatures::readFilterParameters(reader, index);
reader->openFilterGroup(this, index);
setNewCellFeatureAttributeMatrixName(reader->readString("NewCellFeatureAttributeMatrixName", getNewCellFeatureAttributeMatrixName() ) );
setActiveArrayName(reader->readString("ActiveArrayName", getActiveArrayName() ) );
setFeatureParentIdsArrayName(reader->readString("FeatureParentIdsArrayName", getFeatureParentIdsArrayName() ) );
setCellParentIdsArrayName(reader->readString("CellParentIdsArrayName", getCellParentIdsArrayName() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setAxisTolerance( reader->readValue("AxisTolerance", getAxisTolerance()) );
setAngleTolerance( reader->readValue("AngleTolerance", getAngleTolerance()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void GroupMicroTextureRegions::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
GroupFeatures::readFilterParameters(reader, index);
reader->openFilterGroup(this, index);
setNewCellFeatureAttributeMatrixName(reader->readString("NewCellFeatureAttributeMatrixName", getNewCellFeatureAttributeMatrixName() ) );
setActiveArrayName(reader->readString("ActiveArrayName", getActiveArrayName() ) );
setFeatureParentIdsArrayName(reader->readString("FeatureParentIdsArrayName", getFeatureParentIdsArrayName() ) );
setCellParentIdsArrayName(reader->readString("CellParentIdsArrayName", getCellParentIdsArrayName() ) );
setCrystalStructuresArrayPath(reader->readDataArrayPath("CrystalStructuresArrayPath", getCrystalStructuresArrayPath() ) );
setAvgQuatsArrayPath(reader->readDataArrayPath("AvgQuatsArrayPath", getAvgQuatsArrayPath() ) );
setVolumesArrayPath(reader->readDataArrayPath("VolumesArrayPath", getVolumesArrayPath() ) );
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setCAxisTolerance( reader->readValue("CAxisTolerance", getCAxisTolerance()) );
setUseRunningAverage( reader->readValue("UseRunningAverage", getUseRunningAverage()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void CropImageGeometry::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setNewDataContainerName( reader->readString("NewDataContainerName", getNewDataContainerName() ) );
setCellAttributeMatrixPath( reader->readDataArrayPath("CellAttributeMatrixPath", getCellAttributeMatrixPath() ) );
setCellFeatureAttributeMatrixPath( reader->readDataArrayPath("CellFeatureAttributeMatrixPath", getCellFeatureAttributeMatrixPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setXMin( reader->readValue("XMin", getXMin()) );
setYMin( reader->readValue("YMin", getYMin()) );
setZMin( reader->readValue("ZMin", getZMin()) );
setXMax( reader->readValue("XMax", getXMax()) );
setYMax( reader->readValue("YMax", getYMax()) );
setZMax( reader->readValue("ZMax", getZMax()) );
setRenumberFeatures( reader->readValue("RenumberFeatures", getRenumberFeatures()) );
setSaveAsNewDataContainer( reader->readValue("SaveAsNewDataContainer", getSaveAsNewDataContainer()) );
setUpdateOrigin( reader->readValue("UpdateOrigin", getUpdateOrigin()) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void RemoveFlaggedFeatures::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(BooleanFilterParameter::New("Fill-in Removed Features", "FillRemovedFeatures", getFillRemovedFeatures(), FilterParameter::Parameter));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Int32, 1, DREAM3D::AttributeMatrixType::Cell, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Cell Feature Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(DREAM3D::TypeNames::Bool, 1, DREAM3D::AttributeMatrixType::CellFeature, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Flagged Features", "FlaggedFeaturesArrayPath", getFlaggedFeaturesArrayPath(), FilterParameter::RequiredArray, req));
}
setFilterParameters(parameters);
}