void MapAlignmentAlgorithmPoseClustering::updateMembers_()
{
superimposer_.setParameters(param_.copy("superimposer:", true));
superimposer_.setLogType(getLogType());
pairfinder_.setParameters(param_.copy("pairfinder:", true));
pairfinder_.setLogType(getLogType());
max_num_peaks_considered_ = param_.getValue("max_num_peaks_considered");
}
S3Params InitConfig(const string& urlWithOptions) {
#ifdef S3_STANDALONE
s3ext_segid = 0;
s3ext_segnum = 1;
#else
s3ext_segid = GpIdentity.segindex;
s3ext_segnum = GpIdentity.numsegments;
#endif
if (s3ext_segid == -1 && s3ext_segnum > 0) {
s3ext_segid = 0;
s3ext_segnum = 1;
}
string sourceUrl = TruncateOptions(urlWithOptions);
S3_CHECK_OR_DIE(!sourceUrl.empty(), S3RuntimeError, "URL not found from location string");
string configPath = GetOptS3(urlWithOptions, "config");
if (configPath.empty()) {
S3WARN("The 'config' parameter is not provided, use default value 's3/s3.conf'.");
configPath = "s3/s3.conf";
}
string configSection = GetOptS3(urlWithOptions, "section");
if (configSection.empty()) {
configSection = "default";
}
// region could be empty
string urlRegion = GetOptS3(urlWithOptions, "region");
// read configurations from file
Config s3Cfg(configPath);
S3_CHECK_OR_DIE(s3Cfg.Handle() != NULL, S3RuntimeError,
"Failed to parse config file '" + configPath + "', or it doesn't exist");
S3_CHECK_OR_DIE(s3Cfg.SectionExist(configSection), S3ConfigError,
"Selected section '" + configSection +
"' does not exist, please check your configuration file",
configSection);
bool useHttps = s3Cfg.GetBool(configSection, "encryption", "true");
bool verifyCert = s3Cfg.GetBool(configSection, "verifycert", "true");
string version = s3Cfg.Get(configSection, "version", "");
S3Params params(sourceUrl, useHttps, version, urlRegion);
string content = s3Cfg.Get(configSection, "loglevel", "WARNING");
s3ext_loglevel = getLogLevel(content.c_str());
content = s3Cfg.Get(configSection, "logtype", "INTERNAL");
s3ext_logtype = getLogType(content.c_str());
params.setDebugCurl(s3Cfg.GetBool(configSection, "debug_curl", "false"));
params.setCred(s3Cfg.Get(configSection, "accessid", ""), s3Cfg.Get(configSection, "secret", ""),
s3Cfg.Get(configSection, "token", ""));
s3ext_logserverhost = s3Cfg.Get(configSection, "logserverhost", "127.0.0.1");
s3ext_logserverport = s3Cfg.SafeScan("logserverport", configSection, 1111, 1, 65535);
int64_t numOfChunks = s3Cfg.SafeScan("threadnum", configSection, 4, 1, 8);
params.setNumOfChunks(numOfChunks);
int64_t chunkSize = s3Cfg.SafeScan("chunksize", configSection, 64 * 1024 * 1024,
8 * 1024 * 1024, 128 * 1024 * 1024);
params.setChunkSize(chunkSize);
int64_t lowSpeedLimit = s3Cfg.SafeScan("low_speed_limit", configSection, 10240, 0, INT_MAX);
params.setLowSpeedLimit(lowSpeedLimit);
int64_t lowSpeedTime = s3Cfg.SafeScan("low_speed_time", configSection, 60, 0, INT_MAX);
params.setLowSpeedTime(lowSpeedTime);
params.setVerifyCert(verifyCert);
CheckEssentialConfig(params);
return params;
}
