void Signal::printOn(ostream &os) const
{
//os<<getSignalType()<<"@"<<getConsensusPosition()<<":"<<*propagators[propagators[1] ? 1 :0];
const int n=belongsInWhichQueues().size();
os<<getSignalType()<<"@"<<getConsensusPosition();
for(int i=0 ; i<n ; ++i) os<<">"<<*propagators[i];
}
void jsonifyModule(const Module& module, rapidjson::Value& moduleValue, rapidjson::Document& document){
moduleValue.SetObject();
moduleValue.AddMember("name", module.getName().c_str(), document.GetAllocator());
moduleValue.AddMember("description", module.getDescription().c_str(), document.GetAllocator());
moduleValue.AddMember("type", module.getType().getName().c_str(), document.GetAllocator());
//add inputs
rapidjson::Value inputsValue;
inputsValue.SetObject();
for(unsigned int i=0; i<module.getInputSize(); ++i){
auto inputLink = module.getInput(i);
auto outputLink = inputLink->getOutputLink();
//only add connected links
if(outputLink){
std::string sourceString = outputLink->getOwner().getName() + "." + outputLink->getModuleOutput().getName();
rapidjson::Value source(sourceString.c_str(), document.GetAllocator());
rapidjson::Value inputName(inputLink->getModuleInput().getName().c_str(), document.GetAllocator());
inputsValue.AddMember(inputName, source, document.GetAllocator());
} else {
//add custom unlinked values
rapidjson::Value vectorValue;
vectorValue.SetArray();
auto unlinkedValue = inputLink->getUnlinkedValue();
for(int j=0; j<unlinkedValue.getSignalType().dimensionality; ++j){
vectorValue.PushBack(unlinkedValue[j], document.GetAllocator());
}
rapidjson::Value inputName(inputLink->getModuleInput().getName().c_str(), document.GetAllocator());
inputsValue.AddMember(inputName, vectorValue, document.GetAllocator());
}
}
moduleValue.AddMember("inputs", inputsValue, document.GetAllocator());
}
bool BranchAcceptor::save(ostream &os)
{
os.precision(8);
os << "BranchAcceptor" << endl;
os << getSignalType() << " " << getCutoff() << " " << getStrand() <<endl;
os << getConsensusOffset() << endl;
branchPoint->save(os);
acceptor->save(os);
return true;
}
void jsonifyModuleType(const ModuleType& moduleType, rapidjson::Value& moduleTypeValue, rapidjson::Document& document){
//TODO assert moduleType.isComposite
moduleTypeValue.SetObject();
moduleTypeValue.AddMember("name", moduleType.getName().c_str(), document.GetAllocator());
moduleTypeValue.AddMember("description", moduleType.getDescription().c_str(), document.GetAllocator());
//handle inputs
rapidjson::Value inputs;
inputs.SetArray();
for(unsigned int i=0; i<moduleType.numInputs(); ++i){
const ModuleInput* input = moduleType.getInput(i);
rapidjson::Value inputValue;
inputValue.SetObject();
inputValue.AddMember("name", input->getName().c_str(), document.GetAllocator());
int dimensionality = input->getSignalType().dimensionality;
std::stringstream ss;
ss << dimensionality << "f";
rapidjson::Value typeValue(ss.str().c_str(), document.GetAllocator());
inputValue.AddMember("type", typeValue, document.GetAllocator());
inputs.PushBack(inputValue, document.GetAllocator());
}
moduleTypeValue.AddMember("inputs", inputs, document.GetAllocator());
//handle outputs
rapidjson::Value outputs;
outputs.SetArray();
for(unsigned int i=0; i<moduleType.numOutputs(); ++i){
const ModuleOutput* output = moduleType.getOutput(i);
const Module* outputsModule = moduleType.getGraph()->getModule("outputs");
rapidjson::Value outputValue;
outputValue.SetObject();
outputValue.AddMember("name", output->getName().c_str(), document.GetAllocator());
auto inputLink = outputsModule->getInput(i);
auto outputLink = outputsModule->getInput(i)->getOutputLink();
if(outputLink!=nullptr){
std::string sourceString = outputLink->getOwner().getName() + "." + outputLink->getModuleOutput().getName();
rapidjson::Value sourceStringValue(sourceString.c_str(),document.GetAllocator());
outputValue.AddMember("source", sourceStringValue, document.GetAllocator());
} else {
rapidjson::Value vectorValue;
vectorValue.SetArray();
auto unlinkedValue = inputLink->getUnlinkedValue();
for(int j=0; j<unlinkedValue.getSignalType().dimensionality; ++j){
vectorValue.PushBack(unlinkedValue[j], document.GetAllocator());
}
outputValue.AddMember("source", vectorValue, document.GetAllocator());
}
outputs.PushBack(outputValue, document.GetAllocator());
}
moduleTypeValue.AddMember("outputs", outputs, document.GetAllocator());
//handle internal modules
rapidjson::Value modulesValue;
modulesValue.SetArray();
auto graph = moduleType.getGraph();
graph->traverseModulesTopological([&](const Module& module){
//skip input/output modules
if(module.getType().isGraphInput() || module.getType().isGraphOutput())return;
rapidjson::Value moduleValue;
jsonifyModule(module, moduleValue, document);
modulesValue.PushBack(moduleValue, document.GetAllocator());
});
moduleTypeValue.AddMember("modules", modulesValue, document.GetAllocator());
}
void Signal::printOn(ostream &os) const
{
os<<getSignalType()<<"@"<<getConsensusPosition()<<":"<<*propagators[propagators[1] ? 1 :0];
}
