static char *
get_gputop_system_path(void)
{
const char *bin_dir = get_bin_dir();
const char *options[] = {
".libs/lt-gputop-system",
".libs/gputop-system",
"gputop-system",
NULL
};
for (int i = 0; options[i]; i++) {
struct stat sb;
char *path = NULL;
if (asprintf(&path, "%s/%s", bin_dir, options[i]) < 0) {
perror("Failed to format gputop-system path");
exit(1);
}
if (stat(path, &sb) == 0)
return path;
free(path);
}
fprintf(stderr, "Failed to find gputop-system program\n");
exit(1);
}
int lamsa_index(int argc, char *argv[])
{
clock_t t = clock();
char *prefix=0;
int type=0, c;
/*while ((c = getopt(argc, argv, "i:")) >= 0)
{
switch (c)
{
case 'i':
type = atoi(optarg);
if (type > 2 || type < 1) return lamsa_index_usage();
break;
default:
return lamsa_index_usage();
}
}*/
if (optind + 2 > argc) return lamsa_index_usage();
prefix = strdup(argv[optind+1]);
char *bin_dir;
bin_dir = get_bin_dir(argv[0]);
bwt_index(prefix);
if (type==0) gem_build(bin_dir, prefix);
else if (type==1) bwa_build(bin_dir, prefix);
else if(type==2) soap_bulid(bin_dir, prefix);
else return lamsa_index_usage();
//fprintf(stderr, "[lamsa_index] Time Consupmtion: %.3f sec.\n", (float)(clock()-t)/CLOCKS_PER_SEC);
return 0;
}
int get_bin(t_data *data)
{
char *path;
char *frag;
path = data->std.path;
data->bin = NULL;
while ((frag = get_bin_dir(&path)))
{
if ((get_file_dir(&data->bin, frag)) == SH_FAIL)
return (SH_FAIL);
free(frag);
}
return (SH_OK);
}
/* See if gputop is being run from a source/build directory and set
* the GPUTOP_WEB_ROOT environment accordingly if so, to avoid
* neeing to run make install during development/testing...
*/
static void
setup_web_root_env(void)
{
const char *bin_dir = get_bin_dir();
char *index_path = NULL;
struct stat sb;
if (getenv("GPUTOP_WEB_ROOT"))
return;
if (asprintf(&index_path, "%s/gputop.js", bin_dir) < 0) {
fprintf(stderr, "Failed to format index.html path\n");
exit(1);
}
if (stat(index_path, &sb) == 0)
setenv("GPUTOP_WEB_ROOT", bin_dir, 1);
free(index_path);
}
