int
main()
{
gsl_spmatrix *A = gsl_spmatrix_alloc(5, 4); /* triplet format */
gsl_spmatrix *C;
size_t i, j;
/* build the sparse matrix */
gsl_spmatrix_set(A, 0, 2, 3.1);
gsl_spmatrix_set(A, 0, 3, 4.6);
gsl_spmatrix_set(A, 1, 0, 1.0);
gsl_spmatrix_set(A, 1, 2, 7.2);
gsl_spmatrix_set(A, 3, 0, 2.1);
gsl_spmatrix_set(A, 3, 1, 2.9);
gsl_spmatrix_set(A, 3, 3, 8.5);
gsl_spmatrix_set(A, 4, 0, 4.1);
printf("printing all matrix elements:\n");
for (i = 0; i < 5; ++i)
for (j = 0; j < 4; ++j)
printf("A(%zu,%zu) = %g\n", i, j,
gsl_spmatrix_get(A, i, j));
/* print out elements in triplet format */
printf("matrix in triplet format (i,j,Aij):\n");
for (i = 0; i < A->nz; ++i)
printf("(%zu, %zu, %.1f)\n", A->i[i], A->p[i], A->data[i]);
/* convert to compressed column format */
C = gsl_spmatrix_compcol(A);
printf("matrix in compressed column format:\n");
printf("i = [ ");
for (i = 0; i < C->nz; ++i)
printf("%zu, ", C->i[i]);
printf("]\n");
printf("p = [ ");
for (i = 0; i < C->size2 + 1; ++i)
printf("%zu, ", C->p[i]);
printf("]\n");
printf("d = [ ");
for (i = 0; i < C->nz; ++i)
printf("%g, ", C->data[i]);
printf("]\n");
gsl_spmatrix_free(A);
gsl_spmatrix_free(C);
return 0;
}
static void
test_random(const size_t N, const gsl_rng *r, const int compress)
{
const gsl_splinalg_itersolve_type *T = gsl_splinalg_itersolve_gmres;
const double tol = 1.0e-8;
int status;
gsl_spmatrix *A = create_random_sparse(N, N, 0.3, r);
gsl_spmatrix *B;
gsl_vector *b = gsl_vector_alloc(N);
gsl_vector *x = gsl_vector_calloc(N);
/* these random matrices require all N iterations to converge */
gsl_splinalg_itersolve *w = gsl_splinalg_itersolve_alloc(T, N, N);
const char *desc = gsl_splinalg_itersolve_name(w);
create_random_vector(b, r);
if (compress)
B = gsl_spmatrix_compcol(A);
else
B = A;
status = gsl_splinalg_itersolve_iterate(B, b, tol, x, w);
gsl_test(status, "%s random status s=%d N=%zu", desc, status, N);
/* check that the residual satisfies ||r|| <= tol*||b|| */
{
gsl_vector *res = gsl_vector_alloc(N);
double normr, normb;
gsl_vector_memcpy(res, b);
gsl_spblas_dgemv(CblasNoTrans, -1.0, A, x, 1.0, res);
normr = gsl_blas_dnrm2(res);
normb = gsl_blas_dnrm2(b);
status = (normr <= tol*normb) != 1;
gsl_test(status, "%s random residual N=%zu normr=%.12e normb=%.12e",
desc, N, normr, normb);
gsl_vector_free(res);
}
gsl_spmatrix_free(A);
gsl_vector_free(b);
gsl_vector_free(x);
gsl_splinalg_itersolve_free(w);
if (compress)
gsl_spmatrix_free(B);
} /* test_random() */
void
test_compress(const size_t M, const size_t N, const double density,
const gsl_rng *r)
{
int status;
size_t i, j;
gsl_spmatrix *m, *ccs, *crs, *ccstr;
m = create_random_sparse(M, N, density, r);
// Compress column sum duplicates
ccs = gsl_spmatrix_compress(m, GSL_SPMATRIX_CCS);
// Compress row sum duplicates
crs = gsl_spmatrix_compress(m, GSL_SPMATRIX_CRS);
status = 0;
for (i = 0; i < ccs->size1; i++)
for (j = 0; j < ccs->size2; j++)
if (gsl_spmatrix_get(crs, i, j) != gsl_spmatrix_get(ccs, i, j))
status = 1;
gsl_test(status, "test_compress: _compress at M=%zu, N=%zu", M, N);
return;
// Transpose in place by changing major
gsl_spmatrix_transpose(crs);
status = 0;
for (i = 0; i < crs->size1; i++)
for (j = 0; j < crs->size2; j++)
if (gsl_spmatrix_get(crs, i, j) != gsl_spmatrix_get(ccs, j, i))
status = 1;
gsl_test(status, "test_compress: transpose inplace at M=%zu, N=%zu", M, N);
gsl_spmatrix_transpose(crs);
// Convert by transpose copy
gsl_spmatrix_switch_major(crs, ccs);
status = 0;
for (i = 0; i < ccs->size1; i++)
for (j = 0; j < ccs->size2; j++)
if (gsl_spmatrix_get(crs, i, j) != gsl_spmatrix_get(ccs, i, j))
status = 1;
gsl_test(status, "test_compress: _switch_major at M=%zu, N=%zu", M, N);
gsl_spmatrix_free(m);
gsl_spmatrix_free(ccs);
gsl_spmatrix_free(crs);
gsl_spmatrix_free(ccstr);
return;
}
static void
test_ops(const size_t M, const size_t N,
const double density, const gsl_rng *r)
{
size_t i, j;
int status;
/* test gsl_spmatrix_add */
{
gsl_spmatrix *A = create_random_sparse(M, N, density, r);
gsl_spmatrix *B = create_random_sparse(M, N, density, r);
gsl_spmatrix *A_ccs = gsl_spmatrix_ccs(A);
gsl_spmatrix *B_ccs = gsl_spmatrix_ccs(B);
gsl_spmatrix *C_ccs = gsl_spmatrix_alloc_nzmax(M, N, 1, GSL_SPMATRIX_CCS);
gsl_spmatrix *A_crs = gsl_spmatrix_crs(A);
gsl_spmatrix *B_crs = gsl_spmatrix_crs(B);
gsl_spmatrix *C_crs = gsl_spmatrix_alloc_nzmax(M, N, 1, GSL_SPMATRIX_CRS);
gsl_spmatrix_add(C_ccs, A_ccs, B_ccs);
gsl_spmatrix_add(C_crs, A_crs, B_crs);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double aij, bij, cij;
aij = gsl_spmatrix_get(A_ccs, i, j);
bij = gsl_spmatrix_get(B_ccs, i, j);
cij = gsl_spmatrix_get(C_ccs, i, j);
if (aij + bij != cij)
status = 1;
aij = gsl_spmatrix_get(A_crs, i, j);
bij = gsl_spmatrix_get(B_crs, i, j);
cij = gsl_spmatrix_get(C_crs, i, j);
if (aij + bij != cij)
status = 2;
}
}
gsl_test(status == 1, "test_ops: add M="F_ZU" N="F_ZU" CCS", M, N);
gsl_test(status == 2, "test_ops: add M="F_ZU" N="F_ZU" CRS", M, N);
gsl_spmatrix_free(A);
gsl_spmatrix_free(B);
gsl_spmatrix_free(A_ccs);
gsl_spmatrix_free(B_ccs);
gsl_spmatrix_free(C_ccs);
gsl_spmatrix_free(A_crs);
gsl_spmatrix_free(B_crs);
gsl_spmatrix_free(C_crs);
}
} /* test_ops() */
static void
test_ops(const size_t M, const size_t N, const gsl_rng *r)
{
size_t i, j;
int status;
/* test gsl_spmatrix_add */
{
gsl_spmatrix *Ta = create_random_sparse(M, N, 0.2, r);
gsl_spmatrix *Tb = create_random_sparse(M, N, 0.2, r);
gsl_spmatrix *a = gsl_spmatrix_compcol(Ta);
gsl_spmatrix *b = gsl_spmatrix_compcol(Tb);
gsl_spmatrix *c = gsl_spmatrix_alloc_nzmax(M, N, 1, GSL_SPMATRIX_CCS);
gsl_spmatrix_add(c, a, b);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double aij = gsl_spmatrix_get(a, i, j);
double bij = gsl_spmatrix_get(b, i, j);
double cij = gsl_spmatrix_get(c, i, j);
if (aij + bij != cij)
status = 1;
}
}
gsl_test(status, "test_ops: _add M=%zu N=%zu compressed format", M, N);
gsl_spmatrix_free(Ta);
gsl_spmatrix_free(Tb);
gsl_spmatrix_free(a);
gsl_spmatrix_free(b);
gsl_spmatrix_free(c);
}
} /* test_ops() */
void
test_io(FILE *inStream, FILE *outStream)
{
gsl_spmatrix *m;
int status;
m = gsl_spmatrix_fscanf(inStream, 1);
status = gsl_spmatrix_fprintf(outStream, m, "%.3lf");
gsl_spmatrix_free(m);
return;
}
gsl_spmatrix *
gsl_spmatrix_alloc_nzmax(const size_t n1, const size_t n2,
const size_t nzmax, const size_t sptype)
{
gsl_spmatrix *m;
if (n1 == 0)
{
GSL_ERROR_VAL ("matrix dimension n1 must be positive integer",
GSL_EINVAL, 0);
}
else if (n2 == 0)
{
GSL_ERROR_VAL ("matrix dimension n2 must be positive integer",
GSL_EINVAL, 0);
}
m = calloc(1, sizeof(gsl_spmatrix));
if (!m)
{
GSL_ERROR_VAL("failed to allocate space for spmatrix struct",
GSL_ENOMEM, 0);
}
m->size1 = n1;
m->size2 = n2;
m->nz = 0;
m->nzmax = GSL_MAX(nzmax, 1);
m->sptype = sptype;
m->i = malloc(m->nzmax * sizeof(size_t));
if (!m->i)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for row indices",
GSL_ENOMEM, 0);
}
if (sptype == GSL_SPMATRIX_TRIPLET)
{
m->p = malloc(m->nzmax * sizeof(size_t));
if (!m->p)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for column indices",
GSL_ENOMEM, 0);
}
}
else if (sptype == GSL_SPMATRIX_CCS)
{
m->p = malloc((n2 + 1) * sizeof(size_t));
m->work = malloc(GSL_MAX(n1, n2) *
GSL_MAX(sizeof(size_t), sizeof(double)));
if (!m->p || !m->work)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for column pointers",
GSL_ENOMEM, 0);
}
}
m->data = malloc(m->nzmax * sizeof(double));
if (!m->data)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for data",
GSL_ENOMEM, 0);
}
return m;
} /* gsl_spmatrix_alloc_nzmax() */
static void
test_toeplitz(const size_t N, const double a, const double b,
const double c)
{
int status;
const double tol = 1.0e-10;
const size_t max_iter = 10;
const gsl_splinalg_itersolve_type *T = gsl_splinalg_itersolve_gmres;
const char *desc;
gsl_spmatrix *A;
gsl_vector *rhs, *x;
gsl_splinalg_itersolve *w;
size_t i, iter = 0;
if (N <= 1)
return;
A = gsl_spmatrix_alloc(N ,N);
rhs = gsl_vector_alloc(N);
x = gsl_vector_calloc(N);
w = gsl_splinalg_itersolve_alloc(T, N, 0);
desc = gsl_splinalg_itersolve_name(w);
/* first row */
gsl_spmatrix_set(A, 0, 0, b);
gsl_spmatrix_set(A, 0, 1, c);
/* interior rows */
for (i = 1; i < N - 1; ++i)
{
gsl_spmatrix_set(A, i, i - 1, a);
gsl_spmatrix_set(A, i, i, b);
gsl_spmatrix_set(A, i, i + 1, c);
}
/* last row */
gsl_spmatrix_set(A, N - 1, N - 2, a);
gsl_spmatrix_set(A, N - 1, N - 1, b);
/* set rhs vector */
gsl_vector_set_all(rhs, 1.0);
/* solve the system */
do
{
status = gsl_splinalg_itersolve_iterate(A, rhs, tol, x, w);
}
while (status == GSL_CONTINUE && ++iter < max_iter);
gsl_test(status, "%s toeplitz status s=%d N=%zu a=%f b=%f c=%f",
desc, status, N, a, b, c);
/* check that the residual satisfies ||r|| <= tol*||b|| */
{
gsl_vector *r = gsl_vector_alloc(N);
double normr, normb;
gsl_vector_memcpy(r, rhs);
gsl_spblas_dgemv(CblasNoTrans, -1.0, A, x, 1.0, r);
normr = gsl_blas_dnrm2(r);
normb = gsl_blas_dnrm2(rhs);
status = (normr <= tol*normb) != 1;
gsl_test(status, "%s toeplitz residual N=%zu a=%f b=%f c=%f normr=%.12e normb=%.12e",
desc, N, a, b, c, normr, normb);
gsl_vector_free(r);
}
gsl_vector_free(x);
gsl_vector_free(rhs);
gsl_spmatrix_free(A);
gsl_splinalg_itersolve_free(w);
} /* test_toeplitz() */
/*
test_poisson()
Solve u''(x) = -pi^2 sin(pi*x), u(x) = sin(pi*x)
epsrel is the relative error threshold with the exact solution
*/
static void
test_poisson(const size_t N, const double epsrel, const int compress)
{
const gsl_splinalg_itersolve_type *T = gsl_splinalg_itersolve_gmres;
const size_t n = N - 2; /* subtract 2 to exclude boundaries */
const double h = 1.0 / (N - 1.0); /* grid spacing */
const double tol = 1.0e-9;
const size_t max_iter = 10;
size_t iter = 0;
gsl_spmatrix *A = gsl_spmatrix_alloc(n ,n); /* triplet format */
gsl_spmatrix *B;
gsl_vector *b = gsl_vector_alloc(n); /* right hand side vector */
gsl_vector *u = gsl_vector_calloc(n); /* solution vector, u0 = 0 */
gsl_splinalg_itersolve *w = gsl_splinalg_itersolve_alloc(T, n, 0);
const char *desc = gsl_splinalg_itersolve_name(w);
size_t i;
int status;
/* construct the sparse matrix for the finite difference equation */
/* first row of matrix */
gsl_spmatrix_set(A, 0, 0, -2.0);
gsl_spmatrix_set(A, 0, 1, 1.0);
/* loop over interior grid points */
for (i = 1; i < n - 1; ++i)
{
gsl_spmatrix_set(A, i, i + 1, 1.0);
gsl_spmatrix_set(A, i, i, -2.0);
gsl_spmatrix_set(A, i, i - 1, 1.0);
}
/* last row of matrix */
gsl_spmatrix_set(A, n - 1, n - 1, -2.0);
gsl_spmatrix_set(A, n - 1, n - 2, 1.0);
/* scale by h^2 */
gsl_spmatrix_scale(A, 1.0 / (h * h));
/* construct right hand side vector */
for (i = 0; i < n; ++i)
{
double xi = (i + 1) * h;
double bi = -M_PI * M_PI * sin(M_PI * xi);
gsl_vector_set(b, i, bi);
}
if (compress)
B = gsl_spmatrix_compcol(A);
else
B = A;
/* solve the system */
do
{
status = gsl_splinalg_itersolve_iterate(B, b, tol, u, w);
}
while (status == GSL_CONTINUE && ++iter < max_iter);
gsl_test(status, "%s poisson status s=%d N=%zu", desc, status, N);
/* check solution against analytic */
for (i = 0; i < n; ++i)
{
double xi = (i + 1) * h;
double u_gsl = gsl_vector_get(u, i);
double u_exact = sin(M_PI * xi);
gsl_test_rel(u_gsl, u_exact, epsrel, "%s poisson N=%zu i=%zu",
desc, N, i);
}
/* check that the residual satisfies ||r|| <= tol*||b|| */
{
gsl_vector *r = gsl_vector_alloc(n);
double normr, normb;
gsl_vector_memcpy(r, b);
gsl_spblas_dgemv(CblasNoTrans, -1.0, A, u, 1.0, r);
normr = gsl_blas_dnrm2(r);
normb = gsl_blas_dnrm2(b);
status = (normr <= tol*normb) != 1;
gsl_test(status, "%s poisson residual N=%zu normr=%.12e normb=%.12e",
desc, N, normr, normb);
gsl_vector_free(r);
}
gsl_splinalg_itersolve_free(w);
gsl_spmatrix_free(A);
gsl_vector_free(b);
gsl_vector_free(u);
if (compress)
gsl_spmatrix_free(B);
} /* test_poisson() */
int
main()
{
const size_t N = 100; /* number of grid points */
const size_t n = N - 2; /* subtract 2 to exclude boundaries */
const double h = 1.0 / (N - 1.0); /* grid spacing */
gsl_spmatrix *A = gsl_spmatrix_alloc(n ,n); /* triplet format */
gsl_spmatrix *C; /* compressed format */
gsl_vector *f = gsl_vector_alloc(n); /* right hand side vector */
gsl_vector *u = gsl_vector_alloc(n); /* solution vector */
size_t i;
/* construct the sparse matrix for the finite difference equation */
/* construct first row */
gsl_spmatrix_set(A, 0, 0, -2.0);
gsl_spmatrix_set(A, 0, 1, 1.0);
/* construct rows [1:n-2] */
for (i = 1; i < n - 1; ++i)
{
gsl_spmatrix_set(A, i, i + 1, 1.0);
gsl_spmatrix_set(A, i, i, -2.0);
gsl_spmatrix_set(A, i, i - 1, 1.0);
}
/* construct last row */
gsl_spmatrix_set(A, n - 1, n - 1, -2.0);
gsl_spmatrix_set(A, n - 1, n - 2, 1.0);
/* scale by h^2 */
gsl_spmatrix_scale(A, 1.0 / (h * h));
/* construct right hand side vector */
for (i = 0; i < n; ++i)
{
double xi = (i + 1) * h;
double fi = -M_PI * M_PI * sin(M_PI * xi);
gsl_vector_set(f, i, fi);
}
/* convert to compressed column format */
C = gsl_spmatrix_ccs(A);
/* now solve the system with the GMRES iterative solver */
{
const double tol = 1.0e-6; /* solution relative tolerance */
const size_t max_iter = 10; /* maximum iterations */
const gsl_splinalg_itersolve_type *T = gsl_splinalg_itersolve_gmres;
gsl_splinalg_itersolve *work =
gsl_splinalg_itersolve_alloc(T, n, 0);
size_t iter = 0;
double residual;
int status;
/* initial guess u = 0 */
gsl_vector_set_zero(u);
/* solve the system A u = f */
do
{
status = gsl_splinalg_itersolve_iterate(C, f, tol, u, work);
/* print out residual norm ||A*u - f|| */
residual = gsl_splinalg_itersolve_normr(work);
fprintf(stderr, "iter "F_ZU" residual = %.12e\n", iter, residual);
if (status == GSL_SUCCESS)
fprintf(stderr, "Converged\n");
}
while (status == GSL_CONTINUE && ++iter < max_iter);
/* output solution */
for (i = 0; i < n; ++i)
{
double xi = (i + 1) * h;
double u_exact = sin(M_PI * xi);
double u_gsl = gsl_vector_get(u, i);
printf("%f %.12e %.12e\n", xi, u_gsl, u_exact);
}
gsl_splinalg_itersolve_free(work);
}
gsl_spmatrix_free(A);
gsl_spmatrix_free(C);
gsl_vector_free(f);
gsl_vector_free(u);
return 0;
} /* main() */
int
main (void)
{
const size_t p = 2000;
const size_t n = p + 1;
gsl_vector *f = gsl_vector_alloc(n);
gsl_vector *x = gsl_vector_alloc(p);
/* allocate sparse Jacobian matrix with 2*p non-zero elements in triplet format */
gsl_spmatrix *J = gsl_spmatrix_alloc_nzmax(n, p, 2 * p, GSL_SPMATRIX_TRIPLET);
gsl_multilarge_nlinear_fdf fdf;
gsl_multilarge_nlinear_parameters fdf_params =
gsl_multilarge_nlinear_default_parameters();
struct model_params params;
size_t i;
params.alpha = 1.0e-5;
params.J = J;
/* define function to be minimized */
fdf.f = penalty_f;
fdf.df = penalty_df;
fdf.fvv = penalty_fvv;
fdf.n = n;
fdf.p = p;
fdf.params = ¶ms;
for (i = 0; i < p; ++i)
{
/* starting point */
gsl_vector_set(x, i, i + 1.0);
/* store sqrt(alpha)*I_p in upper p-by-p block of J */
gsl_spmatrix_set(J, i, i, sqrt(params.alpha));
}
fprintf(stderr, "%-25s %-4s %-4s %-5s %-6s %-4s %-10s %-10s %-7s %-11s %-10s\n",
"Method", "NITER", "NFEV", "NJUEV", "NJTJEV", "NAEV", "Init Cost",
"Final cost", "cond(J)", "Final |x|^2", "Time (s)");
fdf_params.scale = gsl_multilarge_nlinear_scale_levenberg;
fdf_params.trs = gsl_multilarge_nlinear_trs_lm;
solve_system(x, &fdf, &fdf_params);
fdf_params.trs = gsl_multilarge_nlinear_trs_lmaccel;
solve_system(x, &fdf, &fdf_params);
fdf_params.trs = gsl_multilarge_nlinear_trs_dogleg;
solve_system(x, &fdf, &fdf_params);
fdf_params.trs = gsl_multilarge_nlinear_trs_ddogleg;
solve_system(x, &fdf, &fdf_params);
fdf_params.trs = gsl_multilarge_nlinear_trs_cgst;
solve_system(x, &fdf, &fdf_params);
gsl_vector_free(f);
gsl_vector_free(x);
gsl_spmatrix_free(J);
return 0;
}
static void
test_getset(const size_t M, const size_t N, const gsl_rng *r)
{
int status;
size_t i, j;
/* test triplet versions of _get and _set */
{
size_t k = 0;
gsl_spmatrix *m = gsl_spmatrix_alloc(M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double x = (double) ++k;
double y;
gsl_spmatrix_set(m, i, j, x, 0);
y = gsl_spmatrix_get(m, i, j);
if (x != y)
status = 1;
}
}
gsl_test(status, "test_getset: M=%zu N=%zu _get != _set", M, N);
/* test setting an element to 0 */
gsl_spmatrix_set(m, 0, 0, 1.0, 0);
gsl_spmatrix_set(m, 0, 0, 0.0, 0);
status = gsl_spmatrix_get(m, 0, 0) != 0.0;
gsl_test(status, "test_getset: M=%zu N=%zu m(0,0) = %f",
M, N, gsl_spmatrix_get(m, 0, 0));
/* test gsl_spmatrix_set_zero() */
gsl_spmatrix_set(m, 0, 0, 1.0, 0);
gsl_spmatrix_set_zero(m);
status = gsl_spmatrix_get(m, 0, 0) != 0.0;
gsl_test(status, "test_getset: M=%zu N=%zu set_zero m(0,0) = %f",
M, N, gsl_spmatrix_get(m, 0, 0));
/* resassemble matrix to ensure nz is calculated correctly */
k = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double x = (double) ++k;
gsl_spmatrix_set(m, i, j, x, 0);
}
}
status = gsl_spmatrix_nnz(m) != M * N;
gsl_test(status, "test_getset: M=%zu N=%zu set_zero nz = %zu",
M, N, gsl_spmatrix_nnz(m));
gsl_spmatrix_free(m);
}
/* test duplicate values are handled correctly */
{
size_t min = GSL_MIN(M, N);
size_t expected_nnz = min;
size_t nnz;
size_t k = 0;
gsl_spmatrix *m = gsl_spmatrix_alloc(M, N);
status = 0;
for (i = 0; i < min; ++i)
{
for (j = 0; j < 5; ++j)
{
double x = (double) ++k;
double y;
gsl_spmatrix_set(m, i, i, x, 0);
y = gsl_spmatrix_get(m, i, i);
if (x != y)
status = 1;
}
}
gsl_test(status, "test_getset: duplicate test M=%zu N=%zu _get != _set", M, N);
nnz = gsl_spmatrix_nnz(m);
status = nnz != expected_nnz;
gsl_test(status, "test_getset: duplicate test M=%zu N=%zu nnz=%zu, expected=%zu",
M, N, nnz, expected_nnz);
gsl_spmatrix_free(m);
}
/* test compressed version of gsl_spmatrix_get() */
{
gsl_spmatrix *T = create_random_sparse(M, N, 0.3, r);
gsl_spmatrix *C = gsl_spmatrix_compress(T, GSL_SPMATRIX_CCS);
gsl_spmatrix *CR = gsl_spmatrix_compress(T, GSL_SPMATRIX_CRS);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Tij = gsl_spmatrix_get(T, i, j);
double Cij = gsl_spmatrix_get(C, i, j);
if (Tij != Cij)
status = 1;
}
}
gsl_test(status, "test_getset: M=%zu N=%zu compressed column _get", M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Tij = gsl_spmatrix_get(T, i, j);
double Cij = gsl_spmatrix_get(CR, i, j);
if (Tij != Cij)
status = 1;
}
}
gsl_test(status, "test_getset: M=%zu N=%zu compressed row _get", M, N);
gsl_spmatrix_free(T);
gsl_spmatrix_free(C);
gsl_spmatrix_free(CR);
}
} /* test_getset() */
void
test_prop(const size_t M, const size_t N, const double density,
const double d, const gsl_rng *r)
{
gsl_spmatrix *m, *test, *ccs, *crs;
size_t n, p, outerIdx;
int status, any;
m = create_random_sparse(M, N, density, r);
ccs = gsl_spmatrix_compress(m, GSL_SPMATRIX_CCS);
crs = gsl_spmatrix_compress(m, GSL_SPMATRIX_CRS);
// For triplet
/** Test greater than */
test = gsl_spmatrix_gt_elements(m, d);
status = 0;
for (n = 0; n < m->nz; n++)
{
if ((m->data[n] > d) != (gsl_spmatrix_get(test, m->i[n], m->p[n])))
status = 1;
}
gsl_test(status, "test_prop: M=%zu N=%zu _gt_elements triplet", M, N);
gsl_spmatrix_free(test);
/** Test greater or equal than */
test = gsl_spmatrix_ge_elements(m, d);
status = 0;
for (n = 0; n < m->nz; n++)
{
if ((m->data[n] >= d) != (gsl_spmatrix_get(test, m->i[n], m->p[n])))
status = 1;
}
gsl_test(status, "test_prop: M=%zu N=%zu _ge_elements triplet", M, N);
gsl_spmatrix_free(test);
/** Test lower than */
test = gsl_spmatrix_lt_elements(m, d);
status = 0;
for (n = 0; n < m->nz; n++)
{
if ((m->data[n] < d) != (gsl_spmatrix_get(test, m->i[n], m->p[n])))
status = 1;
}
gsl_test(status, "test_prop: M=%zu N=%zu _lt_elements triplet", M, N);
gsl_spmatrix_free(test);
/** Test lower or equal than */
test = gsl_spmatrix_le_elements(m, d);
status = 0;
any = 0;
for (n = 0; n < m->nz; n++)
{
if ((m->data[n] <= d) != (gsl_spmatrix_get(test, m->i[n], m->p[n])))
status = 1;
if (m->data[n] <= d)
any = 1;
}
gsl_test(status, "test_prop: M=%zu N=%zu _le_elements triplet", M, N);
gsl_spmatrix_free(test);
/** Test any */
status = !(any == (int) gsl_spmatrix_any(test));
gsl_test(status, "test_prop: M=%zu N=%zu _any triplet", M, N);
// For CCS
/** Test greater than */
test = gsl_spmatrix_gt_elements(ccs, d);
status = 0;
for (outerIdx = 0; outerIdx < ccs->outerSize; outerIdx++)
{
for (p = ccs->p[outerIdx]; p < ccs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, ccs->i[p], outerIdx)) != (ccs->data[p] > d))
status = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _gt_elements CCS", M, N);
gsl_spmatrix_free(test);
/** Test greater or equal than */
test = gsl_spmatrix_ge_elements(ccs, d);
status = 0;
for (outerIdx = 0; outerIdx < ccs->outerSize; outerIdx++)
{
for (p = ccs->p[outerIdx]; p < ccs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, ccs->i[p], outerIdx)) != (ccs->data[p] >= d))
status = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _ge_elements CCS", M, N);
gsl_spmatrix_free(test);
/** Test lower than */
test = gsl_spmatrix_lt_elements(ccs, d);
status = 0;
for (outerIdx = 0; outerIdx < ccs->outerSize; outerIdx++)
{
for (p = ccs->p[outerIdx]; p < ccs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, ccs->i[p], outerIdx)) != (ccs->data[p] < d))
status = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _lt_elements CCS", M, N);
gsl_spmatrix_free(test);
/** Test lower or equal than */
test = gsl_spmatrix_le_elements(ccs, d);
status = 0;
any = 0;
for (outerIdx = 0; outerIdx < ccs->outerSize; outerIdx++)
{
for (p = ccs->p[outerIdx]; p < ccs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, ccs->i[p], outerIdx)) != (ccs->data[p] <= d))
status = 1;
if (ccs->data[p] <= d)
any = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _le_elements CCS", M, N);
gsl_spmatrix_free(test);
/** Test any */
status = !(any == (int) gsl_spmatrix_any(test));
gsl_test(status, "test_prop: M=%zu N=%zu _any CCS", M, N);
// For CRS
/** Test greater than */
test = gsl_spmatrix_gt_elements(crs, d);
status = 0;
for (outerIdx = 0; outerIdx < crs->outerSize; outerIdx++)
{
for (p = crs->p[outerIdx]; p < crs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, outerIdx, crs->i[p])) != (crs->data[p] > d))
status = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _gt_elements CRS", M, N);
gsl_spmatrix_free(test);
/** Test greater or equal than */
test = gsl_spmatrix_ge_elements(crs, d);
status = 0;
for (outerIdx = 0; outerIdx < crs->outerSize; outerIdx++)
{
for (p = crs->p[outerIdx]; p < crs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, outerIdx, crs->i[p])) != (crs->data[p] >= d))
status = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _ge_elements CRS", M, N);
gsl_spmatrix_free(test);
/** Test lower than */
test = gsl_spmatrix_lt_elements(crs, d);
status = 0;
for (outerIdx = 0; outerIdx < crs->outerSize; outerIdx++)
{
for (p = crs->p[outerIdx]; p < crs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, outerIdx, crs->i[p])) != (crs->data[p] < d))
status = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _lt_elements CRS", M, N);
gsl_spmatrix_free(test);
/** Test lower or equal than */
test = gsl_spmatrix_le_elements(crs, d);
status = 0;
any = 0;
for (outerIdx = 0; outerIdx < crs->outerSize; outerIdx++)
{
for (p = crs->p[outerIdx]; p < crs->p[outerIdx + 1]; p++)
{
if (((int) gsl_spmatrix_get(test, outerIdx, crs->i[p])) != (crs->data[p] <= d))
status = 1;
if (crs->data[p] <= d)
any = 1;
}
}
gsl_test(status, "test_prop: M=%zu N=%zu _le_elements CRS", M, N);
gsl_spmatrix_free(test);
/** Test any */
status = !(any == (int) gsl_spmatrix_any(test));
gsl_test(status, "test_prop: M=%zu N=%zu _any CRS", M, N);
gsl_spmatrix_free(m);
gsl_spmatrix_free(ccs);
gsl_spmatrix_free(crs);
return;
}
void
test_manip(const size_t M, const size_t N, const double density,
const gsl_rng *r)
{
int status;
gsl_spmatrix *tri, *ccs, *crs, *test;
gsl_matrix *dense, *denseDivRows, *denseDivCols;
double sum, sumDense;
gsl_vector *v;
gsl_vector *denseRowSum, *denseColSum;
size_t i, j;
tri = create_random_sparse(M, N, density, r);
dense = gsl_matrix_alloc(M, N);
gsl_spmatrix_sp2d(dense, tri);
/** Get row sum and col sum aswell as divided matrices for dense */
denseDivRows = gsl_matrix_calloc(M, N);
denseDivCols = gsl_matrix_calloc(M, N);
denseRowSum = gsl_vector_calloc(M);
denseColSum = gsl_vector_calloc(N);
sumDense = 0.;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
denseRowSum->data[i * denseRowSum->stride] += gsl_matrix_get(dense, i, j);
denseColSum->data[j * denseColSum->stride] += gsl_matrix_get(dense, i, j);
sumDense += gsl_matrix_get(dense, i, j);
}
}
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_pow_2(denseRowSum->data[i * denseRowSum->stride]) > 1.e-12)
{
gsl_matrix_set(denseDivRows, i, j, gsl_matrix_get(dense, i, j)
/ denseRowSum->data[i * denseRowSum->stride]);
}
else
{
gsl_matrix_set(denseDivRows, i, j, gsl_matrix_get(dense, i, j));
}
if (gsl_pow_2(denseColSum->data[j * denseColSum->stride]) > 1.e-12)
{
gsl_matrix_set(denseDivCols, i, j, gsl_matrix_get(dense, i, j)
/ denseColSum->data[j * denseColSum->stride]);
}
else
{
gsl_matrix_set(denseDivCols, i, j, gsl_matrix_get(dense, i, j));
}
}
}
// Compress
ccs = gsl_spmatrix_compress(tri, GSL_SPMATRIX_CCS);
crs = gsl_spmatrix_compress(tri, GSL_SPMATRIX_CRS);
/** TOTAL SUM */
/** Triplet */
sum = gsl_spmatrix_get_sum(tri);
status = !(sum == sumDense);
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_sum triplet", M, N);
/** CCS */
sum = gsl_spmatrix_get_sum(ccs);
status = !(sum == sumDense);
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_sum CCS", M, N);
/** CRS */
sum = gsl_spmatrix_get_sum(crs);
status = !(sum == sumDense);
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_sum CRS", M, N);
/** COLUMN SUM AND DIVIDE */
/** Triplet */
/* Sum */
v = gsl_vector_alloc(M);
gsl_spmatrix_get_rowsum(v, tri);
status = 0;
for (i = 0; i < M; i++)
if (v->data[i * v->stride] != denseRowSum->data[i * denseRowSum->stride])
status = 1;
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_rowsum triplet", M, N);
/* Div */
test = gsl_spmatrix_alloc_nzmax(crs->size1, crs->size2, 0, GSL_SPMATRIX_TRIPLET);
gsl_spmatrix_memcpy(test, tri);
gsl_spmatrix_div_rows(test, v);
status = 0;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_matrix_get(denseDivRows, i, j) != gsl_spmatrix_get(test, i, j))
status = 1;
}
}
gsl_test(status, "test_manip: M=%zu N=%zu _get != _div_rows triplet", M, N);
gsl_vector_free(v);
gsl_spmatrix_free(test);
/** CCS */
/* Sum */
v = gsl_vector_alloc(M);
gsl_spmatrix_get_rowsum(v, ccs);
status = 0;
for (i = 0; i < M; i++)
if (v->data[i * v->stride] != denseRowSum->data[i * denseRowSum->stride])
status = 1;
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_rowsum CCS", M, N);
/* Div */
test = gsl_spmatrix_alloc_nzmax(ccs->size1, ccs->size2, 0, GSL_SPMATRIX_CCS);
gsl_spmatrix_memcpy(test, ccs);
gsl_spmatrix_div_rows(test, v);
status = 0;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_matrix_get(denseDivRows, i, j) != gsl_spmatrix_get(test, i, j))
status = 1;
}
}
gsl_test(status, "test_manip: M=%zu N=%zu _get != _div_rows CCS", M, N);
gsl_vector_free(v);
gsl_spmatrix_free(test);
/* CRS */
/* Sum */
v = gsl_vector_alloc(M);
gsl_spmatrix_get_rowsum(v, crs);
status = 0;
for (i = 0; i < M; i++)
if (v->data[i * v->stride] != denseRowSum->data[i * denseRowSum->stride])
status = 1;
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_rowsum CRS", M, N);
/* Div */
test = gsl_spmatrix_alloc_nzmax(crs->size1, crs->size2, 0, GSL_SPMATRIX_CRS);
gsl_spmatrix_memcpy(test, crs);
gsl_spmatrix_div_rows(test, v);
status = 0;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_matrix_get(denseDivRows, i, j) != gsl_spmatrix_get(test, i, j))
status = 1;
}
}
gsl_test(status, "test_manip: M=%zu N=%zu _get != _div_rows CRS", M, N);
gsl_vector_free(v);
gsl_spmatrix_free(test);
/** COLUMN SUM AND DIVIDE */
/** Triplet */
/* Sum */
v = gsl_vector_alloc(N);
gsl_spmatrix_get_colsum(v, tri);
status = 0;
for (j = 0; j < N; j++)
if (v->data[j * v->stride] != denseColSum->data[j * denseColSum->stride])
status = 1;
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_colsum triplet", M, N);
/* Div */
test = gsl_spmatrix_alloc_nzmax(tri->size1, tri->size2, 0, GSL_SPMATRIX_TRIPLET);
gsl_spmatrix_memcpy(test, tri);
gsl_spmatrix_div_cols(test, v);
status = 0;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_fcmp(gsl_matrix_get(denseDivCols, i, j), gsl_spmatrix_get(test, i, j), 1.e-12))
{
fprintf(stdout, "mismatch: (%zu, %zu) %lf != %lf\n", i, j, gsl_matrix_get(denseDivCols, i, j),
gsl_spmatrix_get(test, i, j));
status = 1;
}
}
}
gsl_test(status, "test_manip: M=%zu N=%zu _get != _div_cols triplet", M, N);
gsl_vector_free(v);
gsl_spmatrix_free(test);
/** CCS */
/** Sum */
v = gsl_vector_alloc(N);
gsl_spmatrix_get_colsum(v, ccs);
status = 0;
for (j = 0; j < N; j++)
if (v->data[j * v->stride] != denseColSum->data[j * denseColSum->stride])
status = 1;
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_colsum CCS", M, N);
/** Div */
test = gsl_spmatrix_alloc_nzmax(ccs->size1, ccs->size2, 0, GSL_SPMATRIX_CCS);
gsl_spmatrix_memcpy(test, ccs);
gsl_spmatrix_div_cols(test, v);
status = 0;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_matrix_get(denseDivCols, i, j) != gsl_spmatrix_get(test, i, j))
status = 1;
}
}
gsl_test(status, "test_manip: M=%zu N=%zu _get != _div_cols CCS", M, N);
gsl_vector_free(v);
gsl_spmatrix_free(test);
/** CRS */
/* Sum */
v = gsl_vector_alloc(N);
gsl_spmatrix_get_colsum(v, crs);
status = 0;
for (j = 0; j < N; j++)
if (v->data[j * v->stride] != denseColSum->data[j * denseColSum->stride])
status = 1;
gsl_test(status, "test_manip: M=%zu N=%zu _get != _get_colsum CRS", M, N);
/* Div */
test = gsl_spmatrix_alloc_nzmax(crs->size1, crs->size2, 0, GSL_SPMATRIX_CRS);
gsl_spmatrix_memcpy(test, crs);
gsl_spmatrix_div_cols(test, v);
status = 0;
for (i = 0; i < M; i++)
{
for (j = 0; j < N; j++)
{
if (gsl_matrix_get(denseDivCols, i, j) != gsl_spmatrix_get(test, i, j))
status = 1;
}
}
gsl_test(status, "test_manip: M=%zu N=%zu _get != _div_cols CRS", M, N);
gsl_vector_free(v);
gsl_spmatrix_free(test);
/** Free */
gsl_spmatrix_free(tri);
gsl_spmatrix_free(ccs);
gsl_spmatrix_free(crs);
gsl_matrix_free(dense);
gsl_matrix_free(denseDivRows);
gsl_matrix_free(denseDivCols);
gsl_vector_free(denseRowSum);
gsl_vector_free(denseColSum);
return;
}
gsl_spmatrix *
gsl_spmatrix_alloc_nzmax(const size_t n1, const size_t n2,
const size_t nzmax, const size_t sptype)
{
gsl_spmatrix *m;
if (n1 == 0)
{
GSL_ERROR_VAL ("matrix dimension n1 must be positive integer",
GSL_EINVAL, 0);
}
else if (n2 == 0)
{
GSL_ERROR_VAL ("matrix dimension n2 must be positive integer",
GSL_EINVAL, 0);
}
m = calloc(1, sizeof(gsl_spmatrix));
if (!m)
{
GSL_ERROR_VAL("failed to allocate space for spmatrix struct",
GSL_ENOMEM, 0);
}
m->size1 = n1;
m->size2 = n2;
m->nz = 0;
m->nzmax = GSL_MAX(nzmax, 1);
m->sptype = sptype;
m->i = malloc(m->nzmax * sizeof(size_t));
if (!m->i)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for row indices",
GSL_ENOMEM, 0);
}
if (sptype == GSL_SPMATRIX_TRIPLET)
{
m->tree_data = malloc(sizeof(gsl_spmatrix_tree));
if (!m->tree_data)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for AVL tree struct",
GSL_ENOMEM, 0);
}
m->tree_data->n = 0;
/* allocate tree data structure */
m->tree_data->tree = avl_create(compare_triplet, (void *) m,
&avl_allocator_spmatrix);
if (!m->tree_data->tree)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for AVL tree",
GSL_ENOMEM, 0);
}
/* preallocate nzmax tree nodes */
m->tree_data->node_array = malloc(m->nzmax * sizeof(struct avl_node));
if (!m->tree_data->node_array)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for AVL tree nodes",
GSL_ENOMEM, 0);
}
m->p = malloc(m->nzmax * sizeof(size_t));
if (!m->p)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for column indices",
GSL_ENOMEM, 0);
}
}
else if (sptype == GSL_SPMATRIX_CCS)
{
m->p = malloc((n2 + 1) * sizeof(size_t));
m->work = malloc(GSL_MAX(n1, n2) *
GSL_MAX(sizeof(size_t), sizeof(double)));
if (!m->p || !m->work)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for column pointers",
GSL_ENOMEM, 0);
}
}
m->data = malloc(m->nzmax * sizeof(double));
if (!m->data)
{
gsl_spmatrix_free(m);
GSL_ERROR_VAL("failed to allocate space for data",
GSL_ENOMEM, 0);
}
return m;
} /* gsl_spmatrix_alloc_nzmax() */
static void
test_memcpy(const size_t M, const size_t N, const gsl_rng *r)
{
int status;
{
gsl_spmatrix *at = create_random_sparse(M, N, 0.2, r);
gsl_spmatrix *ac = gsl_spmatrix_compress(at, GSL_SPMATRIX_CCS);
gsl_spmatrix *ar = gsl_spmatrix_compress(at, GSL_SPMATRIX_CRS);
gsl_spmatrix *bt, *bc, *br;
bt = gsl_spmatrix_alloc(M, N);
gsl_spmatrix_memcpy(bt, at);
status = gsl_spmatrix_equal(at, bt) != 1;
gsl_test(status, "test_memcpy: _memcpy M=%zu N=%zu triplet format", M, N);
bc = gsl_spmatrix_alloc_nzmax(M, N, ac->nzmax, GSL_SPMATRIX_CCS);
gsl_spmatrix_memcpy(bc, ac);
status = gsl_spmatrix_equal(ac, bc) != 1;
gsl_test(status, "test_memcpy: _memcpy M=%zu N=%zu compressed column format", M, N);
br = gsl_spmatrix_alloc_nzmax(M, N, ar->nzmax, GSL_SPMATRIX_CRS);
gsl_spmatrix_memcpy(br, ar);
status = gsl_spmatrix_equal(ar, br) != 1;
gsl_test(status, "test_memcpy: _memcpy M=%zu N=%zu compressed row format", M, N);
gsl_spmatrix_free(at);
gsl_spmatrix_free(ac);
gsl_spmatrix_free(ar);
gsl_spmatrix_free(bt);
gsl_spmatrix_free(bc);
gsl_spmatrix_free(br);
}
/* test transpose_memcpy */
{
gsl_spmatrix *A = create_random_sparse(M, N, 0.3, r);
gsl_spmatrix *B = gsl_spmatrix_compress(A, GSL_SPMATRIX_CCS);
gsl_spmatrix *BR = gsl_spmatrix_compress(A, GSL_SPMATRIX_CRS);
gsl_spmatrix *AT = gsl_spmatrix_alloc(N, M);
gsl_spmatrix *BT = gsl_spmatrix_alloc_nzmax(N, M, 1, GSL_SPMATRIX_CCS);
gsl_spmatrix *BTR = gsl_spmatrix_alloc_nzmax(N, M, 1, GSL_SPMATRIX_CRS);
size_t i, j;
gsl_spmatrix_transpose_memcpy(AT, A);
gsl_spmatrix_transpose_memcpy(BT, B);
gsl_spmatrix_transpose_memcpy(BTR, BR);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double ATji = gsl_spmatrix_get(AT, j, i);
if (Aij != ATji)
status = 1;
}
}
gsl_test(status, "test_memcpy: _transpose_memcpy M=%zu N=%zu triplet format", M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double Bij = gsl_spmatrix_get(B, i, j);
double BTji = gsl_spmatrix_get(BT, j, i);
if ((Bij != BTji) || (Aij != Bij))
status = 1;
}
}
gsl_test(status, "test_memcpy: _transpose_memcpy M=%zu N=%zu column format", M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double BRij = gsl_spmatrix_get(BR, i, j);
double BTRji = gsl_spmatrix_get(BTR, j, i);
if ((Aij != BRij) || (BRij != BTRji))
status = 1;
}
}
gsl_test(status, "test_memcpy: _transpose_memcpy M=%zu N=%zu row format", M, N);
gsl_spmatrix_free(A);
gsl_spmatrix_free(AT);
gsl_spmatrix_free(B);
gsl_spmatrix_free(BT);
gsl_spmatrix_free(BR);
gsl_spmatrix_free(BTR);
}
} /* test_memcpy() */
static void
test_getset(const size_t M, const size_t N,
const double density, const gsl_rng *r)
{
int status;
size_t i, j;
/* test triplet versions of _get and _set */
{
const double val = 0.75;
size_t k = 0;
gsl_spmatrix *m = gsl_spmatrix_alloc(M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double x = (double) ++k;
double y;
gsl_spmatrix_set(m, i, j, x);
y = gsl_spmatrix_get(m, i, j);
if (x != y)
status = 1;
}
}
gsl_test(status, "test_getset: M="F_ZU" N="F_ZU" _get != _set", M, N);
/* test setting an element to 0 */
gsl_spmatrix_set(m, 0, 0, 1.0);
gsl_spmatrix_set(m, 0, 0, 0.0);
status = gsl_spmatrix_get(m, 0, 0) != 0.0;
gsl_test(status, "test_getset: M="F_ZU" N="F_ZU" m(0,0) = %f",
M, N, gsl_spmatrix_get(m, 0, 0));
/* test gsl_spmatrix_set_zero() */
gsl_spmatrix_set(m, 0, 0, 1.0);
gsl_spmatrix_set_zero(m);
status = gsl_spmatrix_get(m, 0, 0) != 0.0;
gsl_test(status, "test_getset: M="F_ZU" N="F_ZU" set_zero m(0,0) = %f",
M, N, gsl_spmatrix_get(m, 0, 0));
/* resassemble matrix to ensure nz is calculated correctly */
k = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double x = (double) ++k;
gsl_spmatrix_set(m, i, j, x);
}
}
status = gsl_spmatrix_nnz(m) != M * N;
gsl_test(status, "test_getset: M="F_ZU" N="F_ZU" set_zero nz = "F_ZU,
M, N, gsl_spmatrix_nnz(m));
/* test gsl_spmatrix_ptr() */
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double mij = gsl_spmatrix_get(m, i, j);
double *ptr = gsl_spmatrix_ptr(m, i, j);
*ptr += val;
if (gsl_spmatrix_get(m, i, j) != mij + val)
status = 2;
}
}
gsl_test(status == 2, "test_getset: M="F_ZU" N="F_ZU" triplet ptr", M, N);
gsl_spmatrix_free(m);
}
/* test duplicate values are handled correctly */
{
size_t min = GSL_MIN(M, N);
size_t expected_nnz = min;
size_t nnz;
size_t k = 0;
gsl_spmatrix *m = gsl_spmatrix_alloc(M, N);
status = 0;
for (i = 0; i < min; ++i)
{
for (j = 0; j < 5; ++j)
{
double x = (double) ++k;
double y;
gsl_spmatrix_set(m, i, i, x);
y = gsl_spmatrix_get(m, i, i);
if (x != y)
status = 1;
}
}
gsl_test(status, "test_getset: duplicate test M="F_ZU" N="F_ZU" _get != _set", M, N);
nnz = gsl_spmatrix_nnz(m);
status = nnz != expected_nnz;
gsl_test(status, "test_getset: duplicate test M="F_ZU" N="F_ZU" nnz="F_ZU", expected="F_ZU,
M, N, nnz, expected_nnz);
gsl_spmatrix_free(m);
}
/* test CCS version of gsl_spmatrix_get() */
{
const double val = 0.75;
gsl_spmatrix *T = create_random_sparse(M, N, density, r);
gsl_spmatrix *C = gsl_spmatrix_ccs(T);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Tij = gsl_spmatrix_get(T, i, j);
double Cij = gsl_spmatrix_get(C, i, j);
double *ptr = gsl_spmatrix_ptr(C, i, j);
if (Tij != Cij)
status = 1;
if (ptr)
{
*ptr += val;
Cij = gsl_spmatrix_get(C, i, j);
if (Tij + val != Cij)
status = 2;
}
}
}
gsl_test(status == 1, "test_getset: M="F_ZU" N="F_ZU" CCS get", M, N);
gsl_test(status == 2, "test_getset: M="F_ZU" N="F_ZU" CCS ptr", M, N);
gsl_spmatrix_free(T);
gsl_spmatrix_free(C);
}
/* test CRS version of gsl_spmatrix_get() */
{
const double val = 0.75;
gsl_spmatrix *T = create_random_sparse(M, N, density, r);
gsl_spmatrix *C = gsl_spmatrix_crs(T);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Tij = gsl_spmatrix_get(T, i, j);
double Cij = gsl_spmatrix_get(C, i, j);
double *ptr = gsl_spmatrix_ptr(C, i, j);
if (Tij != Cij)
status = 1;
if (ptr)
{
*ptr += val;
Cij = gsl_spmatrix_get(C, i, j);
if (Tij + val != Cij)
status = 2;
}
}
}
gsl_test(status == 1, "test_getset: M="F_ZU" N="F_ZU" CRS get", M, N);
gsl_test(status == 2, "test_getset: M="F_ZU" N="F_ZU" CRS ptr", M, N);
gsl_spmatrix_free(T);
gsl_spmatrix_free(C);
}
} /* test_getset() */
static void
test_io_binary(const size_t M, const size_t N,
const double density, const gsl_rng *r)
{
int status;
gsl_spmatrix *A = create_random_sparse(M, N, density, r);
gsl_spmatrix *A_ccs, *A_crs;
char filename[] = "test.XXXXXX";
#if !defined( _WIN32 )
int fd = mkstemp(filename);
#else
char * fd = _mktemp(filename);
# define fdopen fopen
#endif
/* test triplet I/O */
{
FILE *f = fdopen(fd, "wb");
gsl_spmatrix_fwrite(f, A);
fclose(f);
}
{
FILE *f = fopen(filename, "rb");
gsl_spmatrix *B = gsl_spmatrix_alloc_nzmax(M, N, A->nz, A->sptype);
gsl_spmatrix_fread(f, B);
status = gsl_spmatrix_equal(A, B) != 1;
gsl_test(status, "test_io_binary: fwrite/fread M="F_ZU" N="F_ZU" triplet format", M, N);
fclose(f);
gsl_spmatrix_free(B);
}
/* test CCS I/O */
A_ccs = gsl_spmatrix_ccs(A);
{
FILE *f = fopen(filename, "wb");
gsl_spmatrix_fwrite(f, A_ccs);
fclose(f);
}
{
FILE *f = fopen(filename, "rb");
gsl_spmatrix *B = gsl_spmatrix_alloc_nzmax(M, N, A->nz, GSL_SPMATRIX_CCS);
gsl_spmatrix_fread(f, B);
status = gsl_spmatrix_equal(A_ccs, B) != 1;
gsl_test(status, "test_io_binary: fwrite/fread M="F_ZU" N="F_ZU" CCS format", M, N);
fclose(f);
gsl_spmatrix_free(B);
}
/* test CRS I/O */
A_crs = gsl_spmatrix_crs(A);
{
FILE *f = fopen(filename, "wb");
gsl_spmatrix_fwrite(f, A_crs);
fclose(f);
}
{
FILE *f = fopen(filename, "rb");
gsl_spmatrix *B = gsl_spmatrix_alloc_nzmax(M, N, A->nz, GSL_SPMATRIX_CRS);
gsl_spmatrix_fread(f, B);
status = gsl_spmatrix_equal(A_crs, B) != 1;
gsl_test(status, "test_io_binary: fwrite/fread M="F_ZU" N="F_ZU" CRS format", M, N);
fclose(f);
gsl_spmatrix_free(B);
}
unlink(filename);
gsl_spmatrix_free(A);
gsl_spmatrix_free(A_ccs);
gsl_spmatrix_free(A_crs);
}
static void
test_io_ascii(const size_t M, const size_t N,
const double density, const gsl_rng *r)
{
int status;
gsl_spmatrix *A = create_random_sparse_int(M, N, density, r);
char filename[] = "test.XXXXXX";
#if !defined( _WIN32 )
int fd = mkstemp(filename);
#else
char * fd = _mktemp(filename);
# define fdopen fopen
#endif
/* test triplet I/O */
{
FILE *f = fdopen(fd, "w");
gsl_spmatrix_fprintf(f, A, "%lg");
fclose(f);
}
{
FILE *f = fopen(filename, "r");
gsl_spmatrix *B = gsl_spmatrix_fscanf(f);
status = gsl_spmatrix_equal(A, B) != 1;
gsl_test(status, "test_io_ascii: fprintf/fscanf M="F_ZU" N="F_ZU" triplet format", M, N);
fclose(f);
gsl_spmatrix_free(B);
}
/* test CCS I/O */
{
FILE *f = fopen(filename, "w");
gsl_spmatrix *A_ccs = gsl_spmatrix_ccs(A);
gsl_spmatrix_fprintf(f, A_ccs, "%lg");
fclose(f);
gsl_spmatrix_free(A_ccs);
}
{
FILE *f = fopen(filename, "r");
gsl_spmatrix *B = gsl_spmatrix_fscanf(f);
status = gsl_spmatrix_equal(A, B) != 1;
gsl_test(status, "test_io_ascii: fprintf/fscanf M="F_ZU" N="F_ZU" CCS format", M, N);
fclose(f);
gsl_spmatrix_free(B);
}
/* test CRS I/O */
{
FILE *f = fopen(filename, "w");
gsl_spmatrix *A_crs = gsl_spmatrix_crs(A);
gsl_spmatrix_fprintf(f, A_crs, "%lg");
fclose(f);
gsl_spmatrix_free(A_crs);
}
{
FILE *f = fopen(filename, "r");
gsl_spmatrix *B = gsl_spmatrix_fscanf(f);
status = gsl_spmatrix_equal(A, B) != 1;
gsl_test(status, "test_io_ascii: fprintf/fscanf M="F_ZU" N="F_ZU" CRS format", M, N);
fclose(f);
gsl_spmatrix_free(B);
}
unlink(filename);
gsl_spmatrix_free(A);
}
static void
test_memcpy(const size_t M, const size_t N,
const double density, const gsl_rng *r)
{
int status;
{
gsl_spmatrix *A = create_random_sparse(M, N, density, r);
gsl_spmatrix *A_ccs = gsl_spmatrix_ccs(A);
gsl_spmatrix *A_crs = gsl_spmatrix_crs(A);
gsl_spmatrix *B_t, *B_ccs, *B_crs;
B_t = gsl_spmatrix_alloc(M, N);
gsl_spmatrix_memcpy(B_t, A);
status = gsl_spmatrix_equal(A, B_t) != 1;
gsl_test(status, "test_memcpy: _memcpy M="F_ZU" N="F_ZU" triplet format", M, N);
B_ccs = gsl_spmatrix_alloc_nzmax(M, N, A_ccs->nzmax, GSL_SPMATRIX_CCS);
B_crs = gsl_spmatrix_alloc_nzmax(M, N, A_ccs->nzmax, GSL_SPMATRIX_CRS);
gsl_spmatrix_memcpy(B_ccs, A_ccs);
gsl_spmatrix_memcpy(B_crs, A_crs);
status = gsl_spmatrix_equal(A_ccs, B_ccs) != 1;
gsl_test(status, "test_memcpy: _memcpy M="F_ZU" N="F_ZU" CCS", M, N);
status = gsl_spmatrix_equal(A_crs, B_crs) != 1;
gsl_test(status, "test_memcpy: _memcpy M="F_ZU" N="F_ZU" CRS", M, N);
gsl_spmatrix_free(A);
gsl_spmatrix_free(A_ccs);
gsl_spmatrix_free(A_crs);
gsl_spmatrix_free(B_t);
gsl_spmatrix_free(B_ccs);
gsl_spmatrix_free(B_crs);
}
/* test transpose_memcpy */
{
gsl_spmatrix *A = create_random_sparse(M, N, density, r);
gsl_spmatrix *AT = gsl_spmatrix_alloc(N, M);
gsl_spmatrix *B = gsl_spmatrix_ccs(A);
gsl_spmatrix *BT = gsl_spmatrix_alloc_nzmax(N, M, 1, GSL_SPMATRIX_CCS);
gsl_spmatrix *C = gsl_spmatrix_crs(A);
gsl_spmatrix *CT = gsl_spmatrix_alloc_nzmax(N, M, 1, GSL_SPMATRIX_CRS);
size_t i, j;
gsl_spmatrix_transpose_memcpy(AT, A);
gsl_spmatrix_transpose_memcpy(BT, B);
gsl_spmatrix_transpose_memcpy(CT, C);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double ATji = gsl_spmatrix_get(AT, j, i);
if (Aij != ATji)
status = 1;
}
}
gsl_test(status, "test_memcpy: _transpose_memcpy M="F_ZU" N="F_ZU" triplet format", M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double Bij = gsl_spmatrix_get(B, i, j);
double BTji = gsl_spmatrix_get(BT, j, i);
if ((Bij != BTji) || (Aij != Bij))
status = 1;
}
}
gsl_test(status, "test_memcpy: _transpose_memcpy M="F_ZU" N="F_ZU" CCS format", M, N);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double Cij = gsl_spmatrix_get(C, i, j);
double CTji = gsl_spmatrix_get(CT, j, i);
if ((Cij != CTji) || (Aij != Cij))
status = 1;
}
}
gsl_test(status, "test_memcpy: _transpose_memcpy M="F_ZU" N="F_ZU" CRS format", M, N);
gsl_spmatrix_free(A);
gsl_spmatrix_free(AT);
gsl_spmatrix_free(B);
gsl_spmatrix_free(BT);
gsl_spmatrix_free(C);
gsl_spmatrix_free(CT);
}
} /* test_memcpy() */
static void
test_transpose(const size_t M, const size_t N,
const double density, const gsl_rng *r)
{
int status;
gsl_spmatrix *A = create_random_sparse(M, N, density, r);
gsl_spmatrix *AT = gsl_spmatrix_alloc_nzmax(M, N, A->nz, A->sptype);
gsl_spmatrix *AT2 = gsl_spmatrix_alloc_nzmax(M, N, A->nz, A->sptype);
gsl_spmatrix *AT2_ccs, *AT2_crs;
size_t i, j;
/* test triplet transpose */
gsl_spmatrix_memcpy(AT, A);
gsl_spmatrix_memcpy(AT2, A);
gsl_spmatrix_transpose(AT);
gsl_spmatrix_transpose2(AT2);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double ATji = gsl_spmatrix_get(AT, j, i);
double AT2ji = gsl_spmatrix_get(AT2, j, i);
if (Aij != ATji)
status = 1;
if (Aij != AT2ji)
status = 2;
}
}
gsl_test(status == 1, "test_transpose: transpose M="F_ZU" N="F_ZU" triplet format",
M, N);
gsl_test(status == 2, "test_transpose: transpose2 M="F_ZU" N="F_ZU" triplet format",
M, N);
/* test CCS transpose */
AT2_ccs = gsl_spmatrix_ccs(A);
gsl_spmatrix_transpose2(AT2_ccs);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double AT2ji = gsl_spmatrix_get(AT2_ccs, j, i);
if (Aij != AT2ji)
status = 2;
}
}
gsl_test(status == 2, "test_transpose: transpose2 M="F_ZU" N="F_ZU" CCS format",
M, N);
/* test CRS transpose */
AT2_crs = gsl_spmatrix_crs(A);
gsl_spmatrix_transpose2(AT2_crs);
status = 0;
for (i = 0; i < M; ++i)
{
for (j = 0; j < N; ++j)
{
double Aij = gsl_spmatrix_get(A, i, j);
double AT2ji = gsl_spmatrix_get(AT2_crs, j, i);
if (Aij != AT2ji)
status = 2;
}
}
gsl_test(status == 2, "test_transpose: transpose2 M="F_ZU" N="F_ZU" CRS format",
M, N);
gsl_spmatrix_free(A);
gsl_spmatrix_free(AT);
gsl_spmatrix_free(AT2);
gsl_spmatrix_free(AT2_ccs);
gsl_spmatrix_free(AT2_crs);
}
