static void showifinlengthrange(const GtAlphabet *alphabet,
const GtUchar *start,
unsigned long gmatchlength,
unsigned long querystart,
unsigned long subjectpos,
void *info)
{
Rangespecinfo *rangespecinfo = (Rangespecinfo *) info;
if ((!rangespecinfo->minlength.defined ||
gmatchlength >= rangespecinfo->minlength.valueunsignedlong) &&
(!rangespecinfo->maxlength.defined ||
gmatchlength <= rangespecinfo->maxlength.valueunsignedlong))
{
if (rangespecinfo->showquerypos)
{
printf("%lu ",querystart);
}
printf("%lu",gmatchlength);
if (rangespecinfo->showsubjectpos)
{
printf(" %lu",subjectpos);
}
if (rangespecinfo->showsequence)
{
(void) putchar(' ');
gt_alphabet_decode_seq_to_fp(alphabet,stdout,start + querystart,
gmatchlength);
}
(void) putchar('\n');
}
}
static void mermatchoutput(const Tyrindex *tyrindex,
const Tyrcountinfo *tyrcountinfo,
const Tyrsearchinfo *tyrsearchinfo,
const GtUchar *result,
const GtUchar *query,
const GtUchar *qptr,
uint64_t unitnum,
bool forward)
{
bool firstitem = true;
unsigned long queryposition;
queryposition = (unsigned long) (qptr-query);
if (tyrsearchinfo->showmode & SHOWQSEQNUM)
{
printf(Formatuint64_t,PRINTuint64_tcast(unitnum));
firstitem = false;
}
if (tyrsearchinfo->showmode & SHOWQPOS)
{
ADDTABULATOR;
printf("%c%lu",forward ? '+' : '-',queryposition);
}
if (tyrsearchinfo->showmode & SHOWCOUNTS)
{
unsigned long mernumber = gt_tyrindex_ptr2number(tyrindex,result);
ADDTABULATOR;
printf("%lu",gt_tyrcountinfo_get(tyrcountinfo,mernumber));
}
if (tyrsearchinfo->showmode & SHOWSEQUENCE)
{
ADDTABULATOR;
gt_alphabet_decode_seq_to_fp(tyrsearchinfo->dnaalpha,
stdout,
qptr,
tyrsearchinfo->mersize);
}
if (tyrsearchinfo->showmode & (SHOWSEQUENCE | SHOWQPOS | SHOWCOUNTS))
{
(void) putchar('\n');
}
}
void gt_alphabet_printf_symbolstring(const GtAlphabet *alphabet,
const GtUchar *w, unsigned long len)
{
gt_alphabet_decode_seq_to_fp(alphabet, stdout, w, len);
}
