Exemplos de gt_fasta_reader_create em C++ (Cpp)

Exemplo n.º 1

Arquivo: fasta_reader_rec.c Projeto: jamescasbon/genometools

GtFastaReader* gt_fasta_reader_rec_new(GtStr *sequence_filename)
{
  GtFastaReader *fr = gt_fasta_reader_create(gt_fasta_reader_rec_class());
  GtFastaReaderRec *gt_fasta_reader_rec = gt_fasta_reader_rec_cast(fr);
  gt_fasta_reader_rec->seqio = gt_io_new(sequence_filename
                                   ? gt_str_get(sequence_filename) : NULL,
                                   "r");
  return fr;
}

Exemplo n.º 2

Arquivo: fasta_reader_fsm.c Projeto: AlexWoroschilow/uni_hamburg

GtFastaReader* gt_fasta_reader_fsm_new(GtStr *sequence_filename)
{
  GtFastaReader *fr = gt_fasta_reader_create(gt_fasta_reader_fsm_class());
  GtFastaReaderFSM *gt_fasta_reader_fsm = gt_fasta_reader_fsm_cast(fr);
  gt_fasta_reader_fsm->sequence_filename = gt_str_ref(sequence_filename);
  if (sequence_filename) {
    gt_fasta_reader_fsm->sequence_file =
      gt_file_xopen(gt_str_get(sequence_filename), "r");
  }
  else
    gt_fasta_reader_fsm->sequence_filename = gt_str_new_cstr("stdin");
  return fr;
}