Exemplos de gt_gtf_out_stream_new em C++ (Cpp)

Exemplo n.º 1

int gt_gff3_to_gtf(int argc, const char **argv, GtError *err)
{
  GtNodeStream *gff3_in_stream = NULL, *gtf_out_stream = NULL;
  int parsed_args, had_err = 0;
  gt_error_check(err);

  /* option parsing */
  switch (parse_options(&parsed_args, argc, argv, err)) {
    case OPTIONPARSER_OK: break;
    case OPTIONPARSER_ERROR: return -1;
    case OPTIONPARSER_REQUESTS_EXIT: return 0;
  }

  /* create a gff3 input stream */
  gff3_in_stream = gt_gff3_in_stream_new_unsorted(argc - parsed_args,
                                                  argv + parsed_args);

  if (!gff3_in_stream)
    had_err = -1;

  if (!had_err) {
    /* create a gtf output stream */
    gtf_out_stream = gt_gtf_out_stream_new(gff3_in_stream, NULL);

    /* pull the features through the stream and free them afterwards */
    had_err = gt_node_stream_pull(gtf_out_stream, err);
  }

  /* free */
  gt_node_stream_delete(gff3_in_stream);
  gt_node_stream_delete(gtf_out_stream);

  return had_err;
}

Exemplo n.º 2

Arquivo: gt_gff3_to_gtf.c Projeto: simongog/genometools

static int gt_gff3_to_gtf_runner(int argc, const char **argv, int parsed_args,
                                 void *tool_arguments, GtError *err)
{
  GFF3ToGTFArguments *arguments = tool_arguments;
  GtNodeStream *gff3_in_stream = NULL, *gtf_out_stream = NULL;
  int had_err;

  gt_error_check(err);
  gt_assert(arguments);

  /* create a gff3 input stream */
  gff3_in_stream = gt_gff3_in_stream_new_unsorted(argc - parsed_args,
                                                  argv + parsed_args);

  /* create a gtf output stream */
  gtf_out_stream = gt_gtf_out_stream_new(gff3_in_stream, arguments->outfp);

  /* pull the features through the stream and free them afterwards */
  had_err = gt_node_stream_pull(gtf_out_stream, err);

  /* free */
  gt_node_stream_delete(gff3_in_stream);
  gt_node_stream_delete(gtf_out_stream);

  return had_err;
}