Exemplos de gth_sa_coverage_char em C++ (Cpp)

Exemplo n.º 1

Arquivo: xml_final_sa_visitor.c Projeto: 9beckert/TIR

/* The following function prints the "classic" GeneSeqer2 MATCH line */
static void xml_showmatchline(GthSA *sa, unsigned int indentlevel,
                              GtFile *outfp)
{
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "<MATCH_line gen_id=\"%s\" gen_strand=\"%c\" ",
                     gth_sa_gen_id(sa),
                     gth_sa_gen_strand_char(sa));
  if (gth_sa_alphatype(sa) == DNA_ALPHA) {
    gt_file_xprintf(outfp, "ref_id=\"%s\" ref_strand=\"%c\">\n",
                       gth_sa_ref_id(sa),
                       gth_sa_ref_strand_char(sa));
  }
  else
    gt_file_xprintf(outfp, "ref_id=\"%s\">\n", gth_sa_ref_id(sa));

  indentlevel++;
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp,
                     "<total_alignment_score>%.3f</total_alignment_score>\n",
                     gth_sa_score(sa));
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "<cumulative_length_of_scored_exons>%lu"
                     "</cumulative_length_of_scored_exons>\n",
                     gth_sa_cumlen_scored_exons(sa));
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "<coverage percentage=\"%.3f\" high_type=\"",
                     gth_sa_coverage(sa));
  gt_file_xfputc(gth_sa_coverage_char(sa), outfp);

  gt_file_xprintf(outfp, "\"/>\n");
  indentlevel--;
  gth_indent(outfp, indentlevel);
  gt_file_xprintf(outfp, "</MATCH_line>\n");
}

Exemplo n.º 2

Arquivo: txt_sa_visitor.c Projeto: AlexWoroschilow/uni_hamburg

/* The following function prints the "classic" GeneSeqer2 MATCH line */
static void showmatchline(GthSA *sa, GtFile *outfp)
{
  gt_file_xprintf(outfp, "MATCH\t%s%c\t%s%c\t%5.3f\t"GT_WU"\t%5.3f\t%c\n",
                     gth_sa_gen_id(sa),
                     gth_sa_gen_strand_char(sa),
                     gth_sa_ref_id(sa),
                     gth_sa_ref_strand_char(sa),
                     gth_sa_score(sa),
                     gth_sa_cumlen_scored_exons(sa),
                     gth_sa_coverage(sa),
                     gth_sa_coverage_char(sa));
}