static const guchar*
pt3file_read_board(PicoHarpBoard *board,
const guchar *p)
{
guint i;
get_CHARARRAY(board->hardware_ident, &p);
get_CHARARRAY(board->hardware_version, &p);
gwy_debug("<%.*s> <%.*s>",
(gint)sizeof(board->hardware_ident), board->hardware_ident,
(gint)sizeof(board->hardware_version), board->hardware_version);
board->hardware_serial = gwy_get_guint32_le(&p);
board->sync_divider = gwy_get_guint32_le(&p);
board->cfd_zero_cross0 = gwy_get_guint32_le(&p);
board->cfd_level0 = gwy_get_guint32_le(&p);
board->cfd_zero_cross1 = gwy_get_guint32_le(&p);
board->cfd_level1 = gwy_get_guint32_le(&p);
board->resolution = gwy_get_gfloat_le(&p);
board->router_model_code = gwy_get_guint32_le(&p);
board->router_enabled = !!gwy_get_guint32_le(&p);
for (i = 0; i < G_N_ELEMENTS(board->rt_channel); i++) {
board->rt_channel[i].input_type = gwy_get_guint32_le(&p);
board->rt_channel[i].input_level = gwy_get_gint32_le(&p);
board->rt_channel[i].input_edge = gwy_get_guint32_le(&p);
board->rt_channel[i].cfd_present = !!gwy_get_guint32_le(&p);
board->rt_channel[i].cfd_level = gwy_get_gint32_le(&p);
board->rt_channel[i].cfd_zero_cross = gwy_get_gint32_le(&p);
}
return p;
}
static void
oldmda_read_data(OldMDAFile *mdafile, const gchar *buffer)
{
GwyBrick *brick;
GwyDataField *dfield;
GwyDataLine *cal;
gdouble *data;
gint i, j, k;
const guchar *p;
p = buffer;
brick = gwy_brick_new(mdafile->xres, mdafile->yres, mdafile->zres,
mdafile->xreal, mdafile->yreal, mdafile->zres,
TRUE);
data = gwy_brick_get_data(brick);
for (k = 0; k < mdafile->zres; k++) {
p = buffer + k * 4;
for (i = 0; i < mdafile->yres; i++)
for (j = 0; j < mdafile->xres; j++) {
*(data + k * mdafile->xres * mdafile->yres + j
+ (mdafile->yres - i - 1) * mdafile->xres)
= (gdouble)gwy_get_gint32_le(&p);
p += (mdafile->zres - 1) * 4;
}
}
gwy_brick_set_si_unit_x(brick, mdafile->siunitx);
gwy_brick_set_si_unit_y(brick, mdafile->siunity);
gwy_brick_set_si_unit_z(brick, mdafile->siunitz);
cal = gwy_data_line_new(mdafile->zres, mdafile->zres, FALSE);
data = gwy_data_line_get_data(cal);
for (k = 0; k < mdafile->zres; k++) {
*(data++) = g_array_index(mdafile->xdata, gdouble, k);
}
gwy_data_line_set_si_unit_y(cal, mdafile->siunitz);
gwy_brick_set_zcalibration(brick, cal);
g_object_unref(cal);
g_object_unref(mdafile->siunitx);
g_object_unref(mdafile->siunity);
g_object_unref(mdafile->siunitz);
dfield = gwy_data_field_new(mdafile->xres, mdafile->yres,
mdafile->xreal, mdafile->yreal,
TRUE);
gwy_container_set_object_by_name(mdafile->data, "/brick/0", brick);
gwy_container_set_string_by_name(mdafile->data, "/brick/0/title",
g_strdup("MDA data"));
gwy_brick_mean_plane(brick, dfield, 0, 0, 0,
mdafile->xres, mdafile->yres, -1, FALSE);
gwy_container_set_object_by_name(mdafile->data, "/brick/0/preview",
dfield);
g_object_unref(dfield);
g_object_unref(brick);
gwy_file_volume_import_log_add(mdafile->data, 0, NULL, mdafile->filename);
}
static LIFMemBlock*
lif_read_memblock(const guchar *buffer, gsize *size, gint version)
{
LIFMemBlock *memblock;
const guchar *p;
int i;
p = buffer;
memblock = g_new0(LIFMemBlock, 1);
memblock->magic = gwy_get_gint32_le(&p);
gwy_debug("Magic = %d", memblock->magic);
if (memcmp(&memblock->magic, MAGIC, MAGIC_SIZE) != 0) {
gwy_debug("Wrong magic for memblock");
size = 0;
g_free(memblock);
return NULL;
}
memblock->size = gwy_get_guint32_le(&p);
gwy_debug("Size = %d", memblock->size);
memblock->testcode = *(p++);
gwy_debug("Testcode = 0x%x", memblock->testcode);
if (memblock->testcode != TESTCODE) {
gwy_debug("Wrong testcode for memblock");
g_free(memblock);
size = 0;
return NULL;
}
if (version == 1) {
memblock->memsize = gwy_get_guint32_le(&p);
}
else if (version >= 2) {
memblock->memsize = gwy_get_guint64_le(&p);
}
gwy_debug("data length = %" G_GUINT64_FORMAT "", memblock->memsize);
i = 0;
while (*(p++) != TESTCODE) {
i++;
}
gwy_debug("skipped %d bytes", i);
memblock->desclen = gwy_get_guint32_le(&p);
gwy_debug("description length = %d", memblock->desclen);
memblock->memid = g_convert((const gchar*)p, 2 * memblock->desclen,
"UTF-8", "UTF-16", NULL, NULL, NULL);
gwy_debug("description = %s", memblock->memid);
p += memblock->desclen * 2;
memblock->data = (gpointer)p;
*size = (gsize)(p - buffer) + memblock->memsize;
return memblock;
}
static GwyContainer*
lif_load(const gchar *filename,
G_GNUC_UNUSED GwyRunType mode,
GError **error)
{
GwyContainer *container = NULL;
LIFHeader *header = NULL;
LIFMemBlock *memblock = NULL;
LIFFile *file = NULL;
LIFElement *element = NULL;
LIFDimension *dimension = NULL;
LIFChannel *channel = NULL;
gsize size = 0, memblock_size = 0;
gint64 remaining = 0;
gchar *buffer;
const guchar *p;
GError *err = NULL;
GwyDataField *dfield = NULL;
GwyBrick *brick = NULL;
gdouble *data = NULL;
gint i, j, channelno = 0, volumeno = 0;
gchar *strkey, *lutname;
GMarkupParser parser = {
header_start_element,
header_end_element,
header_parse_text, NULL, NULL
};
GMarkupParseContext *context;
XMLParserData *xmldata;
gint x, xres, xstep, y, yres, ystep, z, zres, zstep, offset, res;
gdouble xreal, yreal, zreal, xoffset, yoffset, zoffset;
gdouble zscale = 1.0, wscale = 1.0;
GwySIUnit *siunitxy = NULL, *siunitz = NULL;
GwySIUnit *siunitx = NULL, *siunity = NULL, *siunitw = NULL;
gint power10xy = 1;
gint power10x = 1, power10y = 1, power10z = 1, power10w = 1;
if (!g_file_get_contents(filename, &buffer, &size, &err)) {
err_GET_FILE_CONTENTS(error, &err);
goto fail;
}
if (size < 13) { /* header too short */
err_TOO_SHORT(error);
goto fail;
}
p = buffer;
remaining = size;
header = g_new0(LIFHeader, 1);
header->magic = gwy_get_gint32_le(&p);
gwy_debug("Magic = %d", header->magic);
header->size = gwy_get_guint32_le(&p);
gwy_debug("Size = %d", header->size);
header->testcode = *(p++);
gwy_debug("Testcode = 0x%x", header->testcode);
if (header->testcode != TESTCODE) {
err_FILE_TYPE(error, "Leica LIF");
goto fail;
}
header->xmllen = gwy_get_guint32_le(&p);
gwy_debug("XML length = %d", header->xmllen);
if (size < 13 + header->xmllen * 2) {
err_TOO_SHORT(error);
goto fail;
}
remaining -= 13;
header->xmlheader = g_convert((const gchar*)p, 2 * header->xmllen,
"UTF-8", "UTF-16", NULL, NULL, NULL);
p += header->xmllen * 2;
remaining -= header->xmllen * 2;
// gwy_debug("%s", header->xmlheader);
/* Parse XML header */
xmldata = g_new0(XMLParserData, 1);
xmldata->file = g_new0(LIFFile, 1);
xmldata->file->elements = g_array_new(FALSE, TRUE,
sizeof(LIFElement));
xmldata->elements = g_ptr_array_new();
context = g_markup_parse_context_new(&parser,
G_MARKUP_TREAT_CDATA_AS_TEXT,
(gpointer)xmldata,
NULL);
if (!g_markup_parse_context_parse(context, header->xmlheader, -1, &err)
|| !g_markup_parse_context_end_parse(context, &err)) {
error = &err;
g_clear_error(&err);
}
g_markup_parse_context_free(context);
file = xmldata->file;
file->header = header;
g_ptr_array_free(xmldata->elements, TRUE);
g_free(xmldata);
/* Reading memblocks */
file->memblocks = g_hash_table_new(g_str_hash, g_str_equal);
while (remaining > 0) {
memblock = lif_read_memblock(p, &memblock_size, file->version);
if (!memblock) {
break;
}
remaining -= memblock_size;
if (remaining >= 0) {
gwy_debug("remaining = %" G_GUINT64_FORMAT "", remaining);
p += memblock_size;
g_hash_table_insert(file->memblocks, memblock->memid,
memblock);
}
}
container = gwy_container_new();
for (i = 0; i < file->elements->len; i++) {
element = &g_array_index(file->elements, LIFElement, i);
if ((element->dimensions == NULL)
|| (element->channels == NULL)) {
gwy_debug("Empty element");
continue;
}
gwy_debug("Dimensions = %d channels=%d",
element->dimensions->len,
element->channels->len);
gwy_debug("memid=%s", element->memid);
/* check if we can load this type of data into
* Gwyddion structures */
res = 0;
if ((element->dimensions->len != 2)
&& (element->dimensions->len != 3)) {
/* check for case ndim == 4 && res == 1 */
for (i = 0; i < element->dimensions->len; i++) {
dimension = &g_array_index(element->dimensions,
LIFDimension, i);
xres = dimension->res;
gwy_debug("dim[%d].res=%d", i, xres);
if (i == 2) {
res = xres;
}
}
if ((element->dimensions->len == 4) && (res == 1)) {
gwy_debug("4D volume");
}
else {
gwy_debug("not loading");
continue;
}
}
memblock = (LIFMemBlock *)g_hash_table_lookup(file->memblocks,
element->memid);
if (!memblock) {
gwy_debug("Failed to locate memblock with key %s",
element->memid);
continue;
}
p = memblock->data;
if (element->dimensions->len == 2) { /* Image */
for (j = 0; j < element->channels->len; j++) {
dimension = &g_array_index(element->dimensions,
LIFDimension, 0);
xres = dimension->res;
xreal = dimension->length;
xoffset = dimension->origin;
xstep = dimension->bytesinc;
siunitxy = gwy_si_unit_new_parse(dimension->unit,
&power10xy);
dimension = &g_array_index(element->dimensions,
LIFDimension, 1);
yres = dimension->res;
yreal = dimension->length;
yoffset = dimension->origin;
ystep = dimension->bytesinc;
if (xreal <= 0.0)
xreal = 1.0;
if (yreal <= 0.0)
yreal = 1.0;
channel = &g_array_index(element->channels,
LIFChannel, j);
offset = channel->bytesinc;
siunitz = gwy_si_unit_new_parse(channel->unit,
&power10z);
zscale = pow10(power10z);
if (offset + (xres - 1) * xstep + (yres - 1)* ystep
> memblock->memsize) {
gwy_debug("Memblock too small");
gwy_debug("%d %" G_GUINT64_FORMAT "",
offset + (xres-1)*xstep + (yres-1)*ystep,
memblock->memsize);
err_SIZE_MISMATCH(error,
memblock->memsize,
offset+(xres-1)*xstep
+(yres-1)*ystep,
FALSE);
goto fail;
}
dfield = gwy_data_field_new(xres, yres,
xreal*pow10(power10xy),
yreal*pow10(power10xy),
TRUE);
gwy_data_field_set_xoffset(dfield,
xoffset*pow10(power10xy));
gwy_data_field_set_yoffset(dfield,
yoffset*pow10(power10xy));
data = gwy_data_field_get_data(dfield);
for (y = 0; y < yres; y++)
for (x = 0; x < xres; x++) {
*(data++) = zscale
* (gdouble)*(p + offset + x*xstep + y*ystep);
}
if (siunitxy) {
gwy_data_field_set_si_unit_xy(dfield, siunitxy);
g_object_unref(siunitxy);
}
if (siunitz) {
gwy_data_field_set_si_unit_z(dfield, siunitz);
g_object_unref(siunitz);
}
strkey = g_strdup_printf("/%d/data", channelno);
gwy_container_set_object_by_name(container,
strkey,
dfield);
g_object_unref(dfield);
g_free(strkey);
if (element->name) {
strkey = g_strdup_printf("/%d/data/title",
channelno);
gwy_container_set_string_by_name(container, strkey,
g_strdup(element->name));
g_free(strkey);
}
if (element->metadata) {
strkey = g_strdup_printf("/%d/meta",
channelno);
gwy_container_set_object_by_name(container,
strkey,
element->metadata);
g_free(strkey);
}
if (channel->lut) {
lutname = NULL;
if (gwy_strequal(channel->lut, "Red"))
lutname = g_strdup_printf("RGB-Red");
else if (gwy_strequal(channel->lut, "Green"))
lutname = g_strdup_printf("RGB-Green");
else if (gwy_strequal(channel->lut, "Blue"))
lutname = g_strdup_printf("RGB-Blue");
else if (gwy_strequal(channel->lut, "Gray"))
lutname = g_strdup_printf("Gray");
if (lutname) {
strkey = g_strdup_printf("/%u/base/palette",
channelno);
gwy_container_set_string_by_name(container,
strkey,
lutname);
g_free(strkey);
}
}
gwy_file_channel_import_log_add(container, channelno,
NULL, filename);
channelno++;
}
}
else if ((element->dimensions->len == 3)
|| ((element->dimensions->len == 4) && (res == 1))) {
/* Volume */
for (j = 0; j < element->channels->len; j++) {
dimension = &g_array_index(element->dimensions,
LIFDimension, 0);
xres = dimension->res;
xreal = dimension->length;
xoffset = dimension->origin;
xstep = dimension->bytesinc;
siunitx = gwy_si_unit_new_parse(dimension->unit,
&power10x);
dimension = &g_array_index(element->dimensions,
LIFDimension, 1);
yres = dimension->res;
yreal = dimension->length;
yoffset = dimension->origin;
ystep = dimension->bytesinc;
siunity = gwy_si_unit_new_parse(dimension->unit,
&power10y);
if (element->dimensions->len == 3) {
dimension = &g_array_index(element->dimensions,
LIFDimension, 2);
}
else {
dimension = &g_array_index(element->dimensions,
LIFDimension, 3);
}
zres = dimension->res;
zreal = dimension->length;
zoffset = dimension->origin;
zstep = dimension->bytesinc;
siunitz = gwy_si_unit_new_parse(dimension->unit,
&power10z);
channel = &g_array_index(element->channels,
LIFChannel, j);
offset = channel->bytesinc;
siunitw = gwy_si_unit_new_parse(channel->unit,
&power10w);
wscale = pow10(power10w);
if (offset
+ (xres-1)*xstep + (yres-1)*ystep + (zres-1)*zstep
> memblock->memsize) {
gwy_debug("Memblock too small");
gwy_debug("%d %" G_GUINT64_FORMAT "",
offset + (xres-1)*xstep
+ (yres-1)*ystep + (zres-1)*zstep,
memblock->memsize);
err_SIZE_MISMATCH(error,
memblock->memsize,
offset + (xres-1)*xstep
+ (yres-1)*ystep + (zres-1)*zstep,
FALSE);
goto fail;
}
brick = gwy_brick_new(xres, yres, zres,
xreal*pow10(power10x),
yreal*pow10(power10y),
zreal*pow10(power10z),
TRUE);
gwy_brick_set_xoffset(brick, xoffset*pow10(power10x));
gwy_brick_set_yoffset(brick, yoffset*pow10(power10y));
gwy_brick_set_zoffset(brick, zoffset*pow10(power10z));
data = gwy_brick_get_data(brick);
for (z = 0; z < zres; z++)
for (y = 0; y < yres; y++)
for (x = 0; x < xres; x++) {
*(data++) = wscale * (gdouble)*(p + offset
+ x*xstep + y*ystep + z*zstep);
}
if (siunitx) {
gwy_brick_set_si_unit_x(brick, siunitx);
g_object_unref(siunitx);
}
if (siunity) {
gwy_brick_set_si_unit_y(brick, siunity);
g_object_unref(siunity);
}
if (siunitz) {
gwy_brick_set_si_unit_z(brick, siunitz);
g_object_unref(siunitz);
}
if (siunitw) {
gwy_brick_set_si_unit_w(brick, siunitw);
g_object_unref(siunitw);
}
strkey = g_strdup_printf("/brick/%d", volumeno);
gwy_container_set_object_by_name(container,
strkey,
brick);
g_free(strkey);
if (element->name) {
strkey = g_strdup_printf("/brick/%d/title",
volumeno);
gwy_container_set_string_by_name(container, strkey,
g_strdup(element->name));
g_free(strkey);
}
if (element->metadata) {
strkey = g_strdup_printf("/brick/%d/meta",
volumeno);
gwy_container_set_object_by_name(container,
strkey,
element->metadata);
g_free(strkey);
}
if (channel->lut) {
lutname = NULL;
if (gwy_strequal(channel->lut, "Red"))
lutname = g_strdup_printf("RGB-Red");
else if (gwy_strequal(channel->lut, "Green"))
lutname = g_strdup_printf("RGB-Green");
else if (gwy_strequal(channel->lut, "Blue"))
lutname = g_strdup_printf("RGB-Blue");
else if (gwy_strequal(channel->lut, "Gray"))
lutname = g_strdup_printf("Gray");
if (lutname) {
strkey = g_strdup_printf("/brick/%d/preview/palette",
volumeno);
gwy_container_set_string_by_name(container,
strkey,
lutname);
g_free(strkey);
}
}
dfield = gwy_data_field_new(xres, yres,
xreal, yreal, FALSE);
gwy_brick_mean_plane(brick, dfield,
0, 0, 0,
xres, yres, -1, FALSE);
strkey = g_strdup_printf("/brick/%d/preview",
volumeno);
gwy_container_set_object_by_name(container,
strkey,
dfield);
g_free(strkey);
g_object_unref(brick);
g_object_unref(dfield);
gwy_file_volume_import_log_add(container, volumeno,
NULL, filename);
volumeno++;
} /* for (channels) */
} /* if (volume) */
}
fail:
/* freeing all stuff */
if (file) {
if (file->memblocks) {
g_hash_table_foreach_remove(file->memblocks,
lif_remove_memblock,
NULL);
g_hash_table_unref(file->memblocks);
}
if (file->elements) {
for (i = 0; i < file->elements->len; i++) {
element = &g_array_index(file->elements, LIFElement, i);
if (element->dimensions) {
for (j = 0; j < element->dimensions->len; j++) {
dimension = &g_array_index(element->dimensions,
LIFDimension, j);
if (dimension->unit)
g_free(dimension->unit);
}
g_array_free(element->dimensions, TRUE);
}
if (element->channels) {
for (j = 0; j < element->channels->len; j++) {
channel = &g_array_index(element->channels,
LIFChannel, j);
if (channel->unit)
g_free(channel->unit);
if (channel->lut)
g_free(channel->lut);
}
g_array_free(element->channels, TRUE);
}
if (element->name)
g_free(element->name);
if (element->memid)
g_free(element->memid);
if (element->metadata)
g_object_unref(element->metadata);
}
g_array_free(file->elements, TRUE);
}
g_free(file);
}
if (header->xmlheader)
g_free(header->xmlheader);
if (header) {
g_free(header);
}
return container;
}
static GwyContainer*
surffile_load(const gchar *filename,
G_GNUC_UNUSED GwyRunType mode,
GError **error)
{
SurfFile surffile;
GwyContainer *meta, *container = NULL;
guchar *buffer = NULL;
const guchar *p;
gsize expected_size, size = 0;
GError *err = NULL;
gchar signature[12];
gdouble max, min;
gint add = 0;
if (!gwy_file_get_contents(filename, &buffer, &size, &err)) {
err_GET_FILE_CONTENTS(error, &err);
g_clear_error(&err);
return NULL;
}
if (size < SURF_HEADER_SIZE + 2) {
err_TOO_SHORT(error);
gwy_file_abandon_contents(buffer, size, NULL);
return NULL;
}
p = buffer;
get_CHARARRAY(signature, &p);
if (strncmp(signature, "DIGITAL SURF", 12) != 0) {
err_FILE_TYPE(error, "Surf");
gwy_file_abandon_contents(buffer, size, NULL);
return NULL;
}
surffile.format = gwy_get_guint16_le(&p);
surffile.nobjects = gwy_get_guint16_le(&p);
surffile.version = gwy_get_guint16_le(&p);
surffile.type = gwy_get_guint16_le(&p);
get_CHARS0(surffile.object_name, &p, 30);
get_CHARS0(surffile.operator_name, &p, 30);
surffile.material_code = gwy_get_guint16_le(&p);
surffile.acquisition = gwy_get_guint16_le(&p);
surffile.range = gwy_get_guint16_le(&p);
surffile.special_points = gwy_get_guint16_le(&p);
surffile.absolute = gwy_get_guint16_le(&p);
/*reserved*/
p += 8;
surffile.pointsize = gwy_get_guint16_le(&p);
surffile.zmin = gwy_get_gint32_le(&p);
surffile.zmax = gwy_get_gint32_le(&p);
surffile.xres = gwy_get_gint32_le(&p);
surffile.yres = gwy_get_gint32_le(&p);
surffile.nofpoints = gwy_get_guint32_le(&p);
surffile.dx = gwy_get_gfloat_le(&p);
surffile.dy = gwy_get_gfloat_le(&p);
surffile.dz = gwy_get_gfloat_le(&p);
get_CHARS0(surffile.xaxis, &p, 16);
get_CHARS0(surffile.yaxis, &p, 16);
get_CHARS0(surffile.zaxis, &p, 16);
get_CHARS0(surffile.dx_unit, &p, 16);
get_CHARS0(surffile.dy_unit, &p, 16);
get_CHARS0(surffile.dz_unit, &p, 16);
get_CHARS0(surffile.xlength_unit, &p, 16);
get_CHARS0(surffile.ylength_unit, &p, 16);
get_CHARS0(surffile.zlength_unit, &p, 16);
surffile.xunit_ratio = gwy_get_gfloat_le(&p);
surffile.yunit_ratio = gwy_get_gfloat_le(&p);
surffile.zunit_ratio = gwy_get_gfloat_le(&p);
surffile.imprint = gwy_get_guint16_le(&p);
surffile.inversion = gwy_get_guint16_le(&p);
surffile.leveling = gwy_get_guint16_le(&p);
p += 12;
surffile.seconds = gwy_get_guint16_le(&p);
surffile.minutes = gwy_get_guint16_le(&p);
surffile.hours = gwy_get_guint16_le(&p);
surffile.day = gwy_get_guint16_le(&p);
surffile.month = gwy_get_guint16_le(&p);
surffile.year = gwy_get_guint16_le(&p);
surffile.measurement_duration = gwy_get_guint16_le(&p);
surffile.comment_size = gwy_get_guint16_le(&p);
surffile.private_size = gwy_get_guint16_le(&p);
get_CHARARRAY(surffile.client_zone, &p);
surffile.XOffset = gwy_get_gfloat_le(&p);
surffile.YOffset = gwy_get_gfloat_le(&p);
surffile.ZOffset = gwy_get_gfloat_le(&p);
gwy_debug("fileformat: %d, n_of_objects: %d, "
"version: %d, object_type: %d",
surffile.format, surffile.nobjects,
surffile.version, surffile.type);
gwy_debug("object name: <%s>", surffile.object_name);
gwy_debug("operator name: <%s>", surffile.operator_name);
gwy_debug("material code: %d, acquisition type: %d",
surffile.material_code, surffile.acquisition);
gwy_debug("range type: %d, special points: %d, absolute: %d",
surffile.range,
surffile.special_points, (gint)surffile.absolute);
gwy_debug("data point size: %d", surffile.pointsize);
gwy_debug("zmin: %d, zmax: %d", surffile.zmin, surffile.zmax);
gwy_debug("xres: %d, yres: %d (xres*yres = %d)",
surffile.xres, surffile.yres, (surffile.xres*surffile.yres));
gwy_debug("total number of points: %d", surffile.nofpoints);
gwy_debug("dx: %g, dy: %g, dz: %g",
surffile.dx, surffile.dy, surffile.dz);
gwy_debug("X axis name: %16s", surffile.xaxis);
gwy_debug("Y axis name: %16s", surffile.yaxis);
gwy_debug("Z axis name: %16s", surffile.zaxis);
gwy_debug("dx unit: %16s", surffile.dx_unit);
gwy_debug("dy unit: %16s", surffile.dy_unit);
gwy_debug("dz unit: %16s", surffile.dz_unit);
gwy_debug("X axis unit: %16s", surffile.xlength_unit);
gwy_debug("Y axis unit: %16s", surffile.ylength_unit);
gwy_debug("Z axis unit: %16s", surffile.zlength_unit);
gwy_debug("xunit_ratio: %g, yunit_ratio: %g, zunit_ratio: %g",
surffile.xunit_ratio, surffile.yunit_ratio, surffile.zunit_ratio);
gwy_debug("imprint: %d, inversion: %d, leveling: %d",
surffile.imprint, surffile.inversion, surffile.leveling);
gwy_debug("Time: %d:%d:%d, Date: %d.%d.%d",
surffile.hours, surffile.minutes, surffile.seconds,
surffile.day, surffile.month, surffile.year);
gwy_debug("private zone size: %d, comment size %d",
surffile.private_size, surffile.comment_size);
expected_size = (SURF_HEADER_SIZE
+ surffile.pointsize/8*surffile.xres*surffile.yres);
if (expected_size != size) {
gwy_debug("Size mismatch!");
if (size > expected_size) add = size - expected_size; /*TODO correct this !*/
else {
err_SIZE_MISMATCH(error, expected_size, size);
gwy_file_abandon_contents(buffer, size, NULL);
return NULL;
}
}
p = buffer + SURF_HEADER_SIZE + add;
if (!fill_data_fields(&surffile, p, error)) {
gwy_file_abandon_contents(buffer, size, NULL);
return NULL;
}
if (!surffile.absolute) {
max = gwy_data_field_get_max(surffile.dfield);
min = gwy_data_field_get_min(surffile.dfield);
gwy_data_field_add(surffile.dfield, -min);
gwy_data_field_multiply(surffile.dfield,
(surffile.zmax - surffile.zmin)/(max-min));
}
switch (surffile.inversion) {
case SURF_INV_Z:
gwy_data_field_invert(surffile.dfield, FALSE, FALSE, TRUE);
break;
case SURF_FLIP_Z:
gwy_data_field_invert(surffile.dfield, FALSE, TRUE, TRUE);
break;
case SURF_FLOP_Z:
gwy_data_field_invert(surffile.dfield, TRUE, FALSE, TRUE);
break;
default:
break;
}
container = gwy_container_new();
gwy_container_set_object_by_name(container, "/0/data", surffile.dfield);
g_object_unref(surffile.dfield);
meta = surffile_get_metadata(&surffile);
gwy_container_set_object_by_name(container, "/0/meta", meta);
g_object_unref(meta);
gwy_app_channel_check_nonsquare(container, 0);
return container;
}
static gsize
pt3file_read_header(const guchar *buffer,
gsize size,
PicoHarpFile *pt3file,
GError **error)
{
const guchar* (*read_imaging_header)(PicoHarpImagingHeader *header,
const guchar *p);
PicoHarpInstrument instr;
const guchar *p;
guint i, expected_size;
p = buffer;
if (size < HEADER_MIN_SIZE + 2) {
err_TOO_SHORT(error);
return 0;
}
get_CHARARRAY(pt3file->ident, &p);
get_CHARARRAY(pt3file->format_version, &p);
get_CHARARRAY(pt3file->creator_name, &p);
get_CHARARRAY(pt3file->creator_version, &p);
gwy_debug("<%.*s> <%.*s> <%.*s> <%.*s>",
(gint)sizeof(pt3file->ident), pt3file->ident,
(gint)sizeof(pt3file->format_version), pt3file->format_version,
(gint)sizeof(pt3file->creator_name), pt3file->creator_name,
(gint)sizeof(pt3file->creator_version), pt3file->creator_version);
get_CHARARRAY(pt3file->file_time, &p);
get_CHARARRAY(pt3file->crlf, &p);
get_CHARARRAY(pt3file->comment, &p);
if (memcmp(pt3file->ident, MAGIC, MAGIC_SIZE) != 0
|| pt3file->crlf[0] != '\r'
|| pt3file->crlf[1] != '\n') {
err_FILE_TYPE(error, "PicoHarp");
return 0;
}
pt3file->number_of_curves = gwy_get_guint32_le(&p);
gwy_debug("number_of_curves: %u", pt3file->number_of_curves);
pt3file->bits_per_record = gwy_get_guint32_le(&p);
gwy_debug("bits_per_record: %u", pt3file->bits_per_record);
pt3file->routing_channels = gwy_get_guint32_le(&p);
gwy_debug("routing_channels: %u", pt3file->routing_channels);
pt3file->number_of_boards = gwy_get_guint32_le(&p);
gwy_debug("number_of_boards: %u", pt3file->number_of_boards);
if (pt3file->number_of_boards != 1) {
g_warning("Number of boards is %u instead of 1. Reading one.",
pt3file->number_of_boards);
pt3file->number_of_boards = MAX(pt3file->number_of_boards, 1);
if (size < HEADER_MIN_SIZE + BOARD_SIZE*pt3file->number_of_boards) {
g_set_error(error, GWY_MODULE_FILE_ERROR,
GWY_MODULE_FILE_ERROR_DATA,
_("File header is truncated."));
return 0;
}
}
pt3file->active_curve = gwy_get_guint32_le(&p);
pt3file->measurement_mode = gwy_get_guint32_le(&p);
gwy_debug("measurement_mode: %u", pt3file->measurement_mode);
pt3file->sub_mode = gwy_get_guint32_le(&p);
gwy_debug("sub_mode: %u", pt3file->sub_mode);
pt3file->range_no = gwy_get_guint32_le(&p);
pt3file->offset = gwy_get_gint32_le(&p);
pt3file->acquisition_time = gwy_get_guint32_le(&p);
pt3file->stop_at = gwy_get_guint32_le(&p);
pt3file->stop_on_ovfl = gwy_get_guint32_le(&p);
pt3file->restart = gwy_get_guint32_le(&p);
pt3file->display_lin_log = !!gwy_get_guint32_le(&p);
pt3file->display_time_axis_from = gwy_get_guint32_le(&p);
pt3file->display_time_axis_to = gwy_get_guint32_le(&p);
pt3file->display_counts_axis_from = gwy_get_guint32_le(&p);
pt3file->display_counts_axis_to = gwy_get_guint32_le(&p);
for (i = 0; i < G_N_ELEMENTS(pt3file->display_curve); i++) {
pt3file->display_curve[i].map_to = gwy_get_guint32_le(&p);
pt3file->display_curve[i].show = gwy_get_guint32_le(&p);
}
for (i = 0; i < G_N_ELEMENTS(pt3file->auto_param); i++) {
pt3file->auto_param[i].start = gwy_get_gfloat_le(&p);
pt3file->auto_param[i].step = gwy_get_gfloat_le(&p);
pt3file->auto_param[i].end = gwy_get_gfloat_le(&p);
}
pt3file->repeat_mode = gwy_get_guint32_le(&p);
pt3file->repeats_per_curve = gwy_get_guint32_le(&p);
pt3file->repeat_time = gwy_get_guint32_le(&p);
pt3file->repeat_wait_time = gwy_get_guint32_le(&p);
get_CHARARRAY(pt3file->script_name, &p);
p = pt3file_read_board(&pt3file->board, p);
p += BOARD_SIZE*(pt3file->number_of_boards - 1);
pt3file->ext_devices = gwy_get_guint32_le(&p);
pt3file->reserved1 = gwy_get_guint32_le(&p);
pt3file->reserved2 = gwy_get_guint32_le(&p);
pt3file->input0_rate = gwy_get_guint32_le(&p);
pt3file->input1_rate = gwy_get_guint32_le(&p);
pt3file->stop_after = gwy_get_guint32_le(&p);
pt3file->stop_reason = gwy_get_guint32_le(&p);
pt3file->number_of_records = gwy_get_guint32_le(&p);
gwy_debug("number_of_records: %u", pt3file->number_of_records);
pt3file->spec_header_length = 4*gwy_get_guint32_le(&p);
gwy_debug("spec_header_length: %u", pt3file->spec_header_length);
gwy_debug("now at pos 0x%0lx", (gulong)(p - buffer));
if (pt3file->measurement_mode != 2
&& pt3file->measurement_mode != 3) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Measurement mode must be 2 or 3; %u is invalid."),
pt3file->measurement_mode);
return 0;
}
if (pt3file->sub_mode != PICO_HARP_IMAGE) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Only area imaging files are supported."));
return 0;
}
if (pt3file->bits_per_record != 32) {
err_BPP(error, pt3file->bits_per_record);
return 0;
}
pt3file->imaging.common.dimensions = gwy_get_guint32_le(&p);
gwy_debug("imaging dimensions: %u", pt3file->imaging.common.dimensions);
if (pt3file->imaging.common.dimensions != 3) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Only area imaging files are supported."));
return 0;
}
pt3file->imaging.common.instrument = instr = gwy_get_guint32_le(&p);
gwy_debug("imaging instrument: %u", pt3file->imaging.common.instrument);
if (instr == PICO_HARP_PIE710) {
expected_size = IMAGING_PIE710_SIZE;
read_imaging_header = &read_pie710_imaging_header;
}
else if (instr == PICO_HARP_KDT180) {
expected_size = IMAGING_KDT180_SIZE;
read_imaging_header = &read_kdt180_imaging_header;
}
else if (instr == PICO_HARP_LSM) {
expected_size = IMAGING_LSM_SIZE;
read_imaging_header = &read_lsm_imaging_header;
}
else {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Unknown instrument number %u."),
instr);
return 0;
}
if (pt3file->spec_header_length != expected_size) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("Wrong imaging header size: %u instead of %u."),
pt3file->spec_header_length, expected_size);
return 0;
}
if ((p - buffer) + expected_size > size) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("File header is truncated."));
return 0;
}
p = read_imaging_header(&pt3file->imaging, p);
gwy_debug("xres: %u", pt3file->imaging.common.xres);
gwy_debug("yres: %u", pt3file->imaging.common.yres);
if (err_DIMENSION(error, pt3file->imaging.common.xres)
|| err_DIMENSION(error, pt3file->imaging.common.xres))
return 0;
return (gsize)(p - buffer);
}
static gboolean
rhk_sm4_read_page_header(RHKPage *page,
const RHKObject *obj,
const guchar *buffer,
gsize size,
GError **error)
{
const guchar *p;
guint i;
if (obj->size < PAGE_HEADER_SIZE) {
err_OBJECT_TRUNCATED(error, RHK_OBJECT_PAGE_HEADER);
return FALSE;
}
p = buffer + obj->offset;
page->field_size = gwy_get_guint16_le(&p);
if (obj->size < page->field_size) {
err_OBJECT_TRUNCATED(error, RHK_OBJECT_PAGE_HEADER);
return FALSE;
}
page->string_count = gwy_get_guint16_le(&p);
gwy_debug("string_count = %u", page->string_count);
page->page_type = gwy_get_guint32_le(&p);
gwy_debug("page_type = %u", page->page_type);
page->data_sub_source = gwy_get_guint32_le(&p);
page->line_type = gwy_get_guint32_le(&p);
page->x_coord = gwy_get_gint32_le(&p);
page->y_coord = gwy_get_gint32_le(&p);
gwy_debug("x_coord = %u, y_coord = %u", page->x_coord, page->y_coord);
page->x_size = gwy_get_guint32_le(&p);
page->y_size = gwy_get_guint32_le(&p);
gwy_debug("x_size = %u, y_size = %u", page->x_size, page->y_size);
if (err_DIMENSION(error, page->x_size)
|| err_DIMENSION(error, page->y_size))
return FALSE;
page->image_type = gwy_get_guint32_le(&p);
gwy_debug("image_type = %u", page->image_type);
page->scan_dir = gwy_get_guint32_le(&p);
gwy_debug("scan_dir = %u", page->scan_dir);
page->group_id = gwy_get_guint32_le(&p);
gwy_debug("group_id = 0x%08x", page->group_id);
page->data_size = gwy_get_guint32_le(&p);
gwy_debug("data_size = %u", page->data_size);
page->min_z_value = gwy_get_gint32_le(&p);
page->max_z_value = gwy_get_gint32_le(&p);
gwy_debug("min,max_z_value = %d %d", page->min_z_value, page->max_z_value);
page->x_scale = gwy_get_gfloat_le(&p);
page->y_scale = gwy_get_gfloat_le(&p);
page->z_scale = gwy_get_gfloat_le(&p);
gwy_debug("x,y,z_scale = %g %g %g",
page->x_scale, page->y_scale, page->z_scale);
/* Use negated positive conditions to catch NaNs */
/* Must not take the absolute value here, spectra may have valid negative
* scales. */
if (!(page->x_scale != 0)) {
g_warning("Real x scale is 0.0, fixing to 1.0");
page->x_scale = 1.0;
}
if (!(page->y_scale != 0)) {
g_warning("Real y scale is 0.0, fixing to 1.0");
page->y_scale = 1.0;
}
page->xy_scale = gwy_get_gfloat_le(&p);
page->x_offset = gwy_get_gfloat_le(&p);
page->y_offset = gwy_get_gfloat_le(&p);
page->z_offset = gwy_get_gfloat_le(&p);
gwy_debug("x,y,z_offset = %g %g %g",
page->x_offset, page->y_offset, page->z_offset);
page->period = gwy_get_gfloat_le(&p);
page->bias = gwy_get_gfloat_le(&p);
page->current = gwy_get_gfloat_le(&p);
page->angle = gwy_get_gfloat_le(&p);
gwy_debug("period = %g, bias = %g, current = %g, angle = %g",
page->period, page->bias, page->current, page->angle);
page->color_info_count = gwy_get_guint32_le(&p);
gwy_debug("color_info_count = %u", page->color_info_count);
page->grid_x_size = gwy_get_guint32_le(&p);
page->grid_y_size = gwy_get_guint32_le(&p);
gwy_debug("gird_x,y = %u %u", page->grid_x_size, page->grid_y_size);
page->object_count = gwy_get_guint32_le(&p);
for (i = 0; i < G_N_ELEMENTS(page->reserved); i++)
page->reserved[i] = gwy_get_guint32_le(&p);
if (!(page->objects = rhk_sm4_read_objects(buffer, p, size,
page->object_count,
RHK_OBJECT_PAGE_HEADER,
error)))
return FALSE;
return TRUE;
}
static RHKPage*
rhk_sm3_read_page(const guchar **buffer,
gsize *len,
GError **error)
{
RHKPage *page;
const guchar *p = *buffer;
guint i, expected;
if (!*len)
return NULL;
if (*len < HEADER_SIZE + 4) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("End of file reached in page header."));
return NULL;
}
if (memcmp(p + MAGIC_OFFSET, MAGIC, MAGIC_SIZE) != 0) {
err_INVALID(error, _("magic page header"));
return NULL;
}
page = g_new0(RHKPage, 1);
page->param_size = gwy_get_guint16_le(&p);
gwy_debug("param_size = %u", page->param_size);
if (*len < page->param_size + 4) {
g_set_error(error, GWY_MODULE_FILE_ERROR, GWY_MODULE_FILE_ERROR_DATA,
_("End of file reached in page header."));
goto FAIL;
}
/* TODO: Convert to UTF-8, store to meta */
memcpy(page->version, p, MAGIC_TOTAL_SIZE);
p += MAGIC_TOTAL_SIZE;
page->string_count = gwy_get_guint16_le(&p);
gwy_debug("string_count = %u", page->string_count);
page->type = gwy_get_guint32_le(&p);
gwy_debug("type = %u", page->type);
page->page_type = gwy_get_guint32_le(&p);
gwy_debug("page_type = %u", page->page_type);
page->data_sub_source = gwy_get_guint32_le(&p);
page->line_type = gwy_get_guint32_le(&p);
page->x_coord = gwy_get_gint32_le(&p);
page->y_coord = gwy_get_gint32_le(&p);
page->x_size = gwy_get_guint32_le(&p);
page->y_size = gwy_get_guint32_le(&p);
gwy_debug("x_size = %u, y_size = %u", page->x_size, page->y_size);
page->source_type = gwy_get_guint32_le(&p);
page->image_type = gwy_get_guint32_le(&p);
gwy_debug("image_type = %u", page->image_type);
page->scan_dir = gwy_get_guint32_le(&p);
gwy_debug("scan_dir = %u", page->scan_dir);
page->group_id = gwy_get_guint32_le(&p);
gwy_debug("group_id = %u", page->group_id);
page->data_size = gwy_get_guint32_le(&p);
gwy_debug("data_size = %u", page->data_size);
page->min_z_value = gwy_get_gint32_le(&p);
page->max_z_value = gwy_get_gint32_le(&p);
gwy_debug("min,max_z_value = %d %d", page->min_z_value, page->max_z_value);
page->x_scale = gwy_get_gfloat_le(&p);
page->y_scale = gwy_get_gfloat_le(&p);
page->z_scale = gwy_get_gfloat_le(&p);
gwy_debug("x,y,z_scale = %g %g %g",
page->x_scale, page->y_scale, page->z_scale);
page->xy_scale = gwy_get_gfloat_le(&p);
page->x_offset = gwy_get_gfloat_le(&p);
page->y_offset = gwy_get_gfloat_le(&p);
page->z_offset = gwy_get_gfloat_le(&p);
gwy_debug("x,y,z_offset = %g %g %g",
page->x_offset, page->y_offset, page->z_offset);
page->period = gwy_get_gfloat_le(&p);
page->bias = gwy_get_gfloat_le(&p);
page->current = gwy_get_gfloat_le(&p);
page->angle = gwy_get_gfloat_le(&p);
gwy_debug("period = %g, bias = %g, current = %g, angle = %g",
page->period, page->bias, page->current, page->angle);
get_CHARARRAY(page->page_id, &p);
p = *buffer + 2 + page->param_size;
for (i = 0; i < page->string_count; i++) {
gchar *s;
gwy_debug("position %04x", p - *buffer);
s = rhk_sm3_read_string(&p, *len - (p - *buffer));
if (!s) {
g_set_error(error, GWY_MODULE_FILE_ERROR,
GWY_MODULE_FILE_ERROR_DATA,
_("End of file reached in string #%u."), i);
goto FAIL;
}
if (i < RHK_STRING_NSTRINGS)
page->strings[i] = s;
else
g_free(s);
}
expected = page->x_size * page->y_size * sizeof(gint32);
gwy_debug("expecting %u bytes of page data now", expected);
if (*len < (p - *buffer) + expected) {
err_SIZE_MISMATCH(error, expected, *len - (p - *buffer));
goto FAIL;
}
if (page->type == RHK_TYPE_IMAGE)
page->page_data = p;
else
page->spectral_data = p;
p += expected;
if (page->type == RHK_TYPE_IMAGE) {
if (*len < (p - *buffer) + 4) {
g_set_error(error, GWY_MODULE_FILE_ERROR,
GWY_MODULE_FILE_ERROR_DATA,
_("End of file reached in color data header."));
goto FAIL;
}
/* Info size includes itself */
page->color_info.size = gwy_get_guint32_le(&p) - 2;
if (*len < (p - *buffer) + page->color_info.size) {
g_set_error(error, GWY_MODULE_FILE_ERROR,
GWY_MODULE_FILE_ERROR_DATA,
_("End of file reached in color data."));
goto FAIL;
}
p += page->color_info.size;
}
*len -= p - *buffer;
*buffer = p;
return page;
FAIL:
rhk_sm3_page_free(page);
return NULL;
}