static int fill_mapping(GtSeqid2SeqnumMapping *mapping, GtBioseq *bioseq,
GtSeqCol *seqcol, GT_UNUSED GtError *err)
{
GtUword i, j, nof_sequences, nof_files;
int had_err = 0;
gt_error_check(err);
gt_assert(mapping && (bioseq || seqcol) && !(bioseq && seqcol));
if (bioseq) {
nof_files = 1;
} else {
gt_assert(seqcol);
nof_files = gt_seq_col_num_of_files(seqcol);
}
for (j = 0; !had_err && j < nof_files; j++) {
if (bioseq)
nof_sequences = gt_bioseq_number_of_sequences(bioseq);
else {
gt_assert(seqcol);
nof_sequences = gt_seq_col_num_of_seqs(seqcol, j);
}
for (i = 0; !had_err && i < nof_sequences; i++) {
char *desc;
if (bioseq)
desc = gt_cstr_dup(gt_bioseq_get_description(bioseq, i));
else
desc = gt_seq_col_get_description(seqcol, j, i);
had_err = handle_description(mapping, desc, i, j, err);
gt_free(desc);
}
}
return had_err;
}
static int handle_category(xmlNode *n, sylverant_quest_list_t *l) {
xmlChar *name, *type;
int rv = 0;
uint32_t type_num;
void *tmp;
sylverant_quest_category_t *cat;
/* Grab the attributes we're expecting */
name = xmlGetProp(n, XC"name");
type = xmlGetProp(n, XC"type");
/* Make sure we have both of them... */
if(!name || !type) {
debug(DBG_ERROR, "Name or type not given for category\n");
rv = -1;
goto err;
}
/* Make sure the type is sane */
if(!xmlStrcmp(type, XC"normal")) {
type_num = SYLVERANT_QUEST_NORMAL;
}
else if(!xmlStrcmp(type, XC"battle")) {
type_num = SYLVERANT_QUEST_BATTLE;
}
else if(!xmlStrcmp(type, XC"challenge")) {
type_num = SYLVERANT_QUEST_CHALLENGE;
}
else if(!xmlStrcmp(type, XC"government")) {
type_num = SYLVERANT_QUEST_GOVERNMENT;
}
else {
debug(DBG_ERROR, "Invalid category type: %s\n", (char *)type);
rv = -2;
goto err;
}
/* Allocate space for the category */
tmp = realloc(l->cats, (l->cat_count + 1) *
sizeof(sylverant_quest_category_t));
if(!tmp) {
debug(DBG_ERROR, "Couldn't allocate space for category\n");
perror("realloc");
rv = -3;
goto err;
}
l->cats = (sylverant_quest_category_t *)tmp;
cat = l->cats + l->cat_count++;
/* Clear the category out */
memset(cat, 0, sizeof(sylverant_quest_category_t));
/* Copy over what we have so far */
cat->type = type_num;
strncpy(cat->name, (const char *)name, 31);
cat->name[31] = '\0';
/* Now that we're done with that, deal with any children of the node */
n = n->children;
while(n) {
if(n->type != XML_ELEMENT_NODE) {
/* Ignore non-elements. */
n = n->next;
continue;
}
else if(!xmlStrcmp(n->name, XC"description")) {
if(handle_description(n, cat)) {
rv = -4;
goto err;
}
}
else if(!xmlStrcmp(n->name, XC"quest")) {
if(handle_quest(n, cat)) {
rv = -5;
goto err;
}
}
else {
debug(DBG_WARN, "Invalid Tag %s on line %hu\n", (char *)n->name,
n->line);
}
n = n->next;
}
err:
xmlFree(name);
xmlFree(type);
return rv;
}
