int commandLine(int argc, char *argv[])
{
int Result = OK;
if (argc >= 3 && strcmp(argv[2], "-q") == 0)
quietMode = 'y';
if (strcmp(argv[1], "-h") == 0 || strcmp(argv[1], "-help") == 0)
{
Result = helpMessage(argc >= 3 ? argv[2] : NULL);
}
else if (strcmp(argv[1], "-r") == 0)
Result = callRandomGraphs(argc, argv);
else if (strcmp(argv[1], "-s") == 0)
Result = callSpecificGraph(argc, argv);
else if (strcmp(argv[1], "-rm") == 0)
Result = callRandomMaxPlanarGraph(argc, argv);
else if (strcmp(argv[1], "-rn") == 0)
Result = callRandomNonplanarGraph(argc, argv);
else
{
ErrorMessage("Unsupported command line. Here is the help for this program.\n");
helpMessage(NULL);
Result = NOTOK;
}
return Result == OK ? 0 : (Result == NONEMBEDDABLE ? 1 : -1);
}
int
main(int argc, char **argv)
{
static int read, mask;
int pins;
int c;
int option_index = 0;
char *serial = NULL;
static struct option long_options[] = {
{"mask", required_argument, 0, 'm'},
{"serial", required_argument, 0, 's'},
{"read", no_argument, 0, 'r'},
{"list", no_argument, 0, 'l'},
{"help", no_argument, 0, 'h'},
{0, 0, 0, 0} /* This is a filler for -1 */
};
if (argc == 1) {
helpMessage();
return 1;
}
while ((c = getopt_long(argc, argv, "m:rhls:", long_options, &option_index)) != -1) {
switch (c) {
case 'l':
listRelays();
return 1;
break;
case 'r':
read = 1;
break;
case 'm':
mask = 1;
pins = atoi(optarg);
break;
case 's':
serial = optarg;
break;
case 'h':
helpMessage();
return 0;
break;
default:
helpMessage();
return 1;
break;
}
}
if (read || mask) {
initBoard(serial);
}
if (mask) {
setPins(pins);
}
if (read) {
return readPins();
}
exit(0);
return (0);
}
int main(int argc, char *argv[]) {
FILE *f;
extern void initGlobalStructure(void);
extern void setMetaKeyOptions(int swap);
parseArguments( argv, argc, args);
if (versionMe) versionMessage(vmPath);
if (helpMe) helpMessage(vmPath, "!Help");
atexit(exit_function); // setup a clean exit function
InitRiscOS();
initGlobalStructure();
dummyWimpPoll();
/* read the image file and allocate memory for Squeak heap
- the image name has been set to the path parsed by c.sqArgument
- if no filename was passed in, the default is to expect an image
file (Squeak/image) inside the application directory */
f = fopen(imageName, "rb");
PRINTF(("\\t Starting Squeak with image file: %s\n", imageName));
if (f == NULL) {
/* give a RPC error message if image file is not found */
extern char VMVersion[];
privateErr.errnum = (bits)0;
sprintf(privateErr.errmess, "Could not open the Squeak image file '%s' (Squeak version: %s)", imageName, VMVersion);
printf("Squeak version: %s was unable to find and open the image file supposedly at %s\n", VMVersion, imageName);
printf("If you simply tried to run the !Squeak application, it will have attempted to run a default image within the application directory which is not usually present\n");
platReportError((os_error *)&privateErr);
helpMessage(vmPath, "!ImName");
ioExit();
}
setMetaKeyOptions(swapMeta);
readImageFromFileHeapSize(f, objectHeadroom);
fclose(f);
/* run Squeak */
PRINTF(("\\t start running image\n"));
interpret();
}
int main(int argc, char *argv[]) {
FILE *f;
extern void initGlobalStructure(void);
extern void setMetaKeyOptions(int swap);
parseArguments( argv, argc, args);
if (versionMe) versionMessage(vmPath);
if (helpMe) helpMessage(vmPath, "!Help");
atexit(exit_function); // setup a clean exit function
InitRiscOS();
initGlobalStructure();
dummyWimpPoll();
/* read the image file and allocate memory for Squeak heap */
f = fopen(imageName, "rb");
PRINTF(("\\t Starting Squeak with image file: %s\n", imageName));
if (f == NULL) {
/* give a RPC error message if image file is not found */
extern char VMVersion[];
privateErr.errnum = (bits)0;
sprintf(privateErr.errmess, "Could not open the Squeak image file '%s' (Squeak version: %s)", imageName, VMVersion);
printf("%s\n", privateErr.errmess);
platReportError((os_error *)&privateErr);
helpMessage(vmPath, "!ImName");
ioExit();
}
setMetaKeyOptions(swapMeta);
readImageFromFileHeapSize(f, objectHeadroom);
fclose(f);
/* run Squeak */
PRINTF(("\\t start running image\n"));
interpret();
}
int saisieAppuisInitQT_main(QApplication &app, int argc, char *argv[])
{
app.setApplicationName("SaisieAppuisInitQT");
app.setOrganizationName("Culture3D");
QStringList cmdline_args = QCoreApplication::arguments();
if (cmdline_args.back().contains("help"))
{
QString help = "Mandatory unnamed args :\n"
"* string :: {Full name (Dir+Pattern)}\n"
"* string :: {Orientation ; NONE if not used}\n"
"* string :: {Point name, or point file name}\n"
"* string :: {Output}\n\n"
"Named args :\n"
"* [Name=SzW] Pt2di :: {Sz of window}\n"
"* [Name=NbF] Pt2di :: {Nb of sub window}\n"
"* [Name=NameAuto] string :: {Prefix for automatic point creation}\n"
//"* [Name=Pref2Add] string :: {Prefix to add during import (for bug correction ?)}\n"
"* [Name=ForceGray] bool :: {Force gray image, def=false}\n"
"* [Name=OriMode] string :: {Orientation type (GRID) (Def=Std)}\n"
"* [Name=ZMoy] REAL :: {Average Z, Mandatory in PB}\n"
"* [Name=ZInc] REAL :: {Incertitude on Z, Mandatory in PB}\n\n"
"Example:\nmm3d " + app.applicationName() + " IMG_558{0-9}[1].tif RadialBasic 100 measures.xml\n\n"
"NB: visual interface for argument edition available with command:\n\n mm3d v" + app.applicationName() + "\n\n";
return helpMessage(app, help);
}
loadTranslation(app);
QSettings settings(QApplication::organizationName(), QApplication::applicationName());
if ((argc>0)&&(string(argv[0]).find("SaisieQT")!= string::npos))
{
argv++;
argc--;
}
Pt2di aSzWin(800,800);
Pt2di aNbFen(-1,-1);
string aFullName, aDir, aName, aNamePt, aNameOut; //mandatory arguments
string aNameOri, aModeOri, aNameAuto, aPrefix2Add; //named args
aPrefix2Add = "";
bool aForceGray = false;
settings.beginGroup("Misc");
aNameAuto = settings.value("defPtName", QString("100")).toString().toStdString();
settings.endGroup();
settings.beginGroup("Drawing settings");
aForceGray = settings.value("forceGray", false ).toBool();
settings.endGroup();
double aZInc, aZMoy;
if (argv[0][0] == 'v')
{
MMVisualMode = true;
argv[0] = (char*) "SaisieAppuisInitQT";
}
std::string aInputSec;
SaisieAppuisInit(argc, argv, aSzWin, aNbFen, aFullName, aDir, aName, aNamePt, aNameOri, aModeOri, aNameOut, aNameAuto, aPrefix2Add, aForceGray, aZMoy, aZInc,aInputSec);
if (!MMVisualMode)
{
if (!checkNamePt( QString (aNamePt.c_str()))) return -1;
QStringList filenames = getFilenames(aDir, aName);
int aNbW = aNbFen.x * aNbFen.y;
if (filenames.size() < aNbW)
{
aNbW = filenames.size();
cVirtualInterface::ComputeNbFen(aNbFen, aNbW);
}
updateSettings(settings, aSzWin,aNbFen, aForceGray);
settings.beginGroup("Misc");
settings.setValue("defPtName", QString(aNameAuto.c_str()));
settings.endGroup();
QStringList input;
input << QString(MMDir().c_str()) + QString("bin/SaisiePts")
<< QString(MMDir().c_str()) + QString("include/XML_MicMac/SaisieInitiale.xml")
<< QString("DirectoryChantier=") + QString(aDir.c_str())
<< QString("+Image=") + QString(aName.c_str())
<< QString("+Ori=") + QString(aNameOri.c_str())
<< QString("+NamePt=") + QString(aNamePt.c_str())
<< QString("+NameAuto=") + QString(aNameAuto.c_str())
<< QString("+Sauv=") + QString(aNameOut.c_str())
<< QString("+SzWx=") + QString::number(aSzWin.x)
<< QString("+SzWy=") + QString::number(aSzWin.y)
<< QString("+NbFx=") + QString::number(aNbFen.x)
<< QString("+NbFy=") + QString::number(aNbFen.y);
if (aModeOri == "GRID")
{
input << QString("+ModeOriIm=eGeomImageGrille")
<< QString("+Conik=false")
<< QString("+ZIncIsProp=false")
//<< QString(+PostFixOri=GRIBin")
<< QString("+Px1Inc=") + QString::number(aZInc)
<< QString("+Px1Moy=") + QString::number(aZMoy);
//<< QString("+Geom=eGeomMNTFaisceauIm1ZTerrain_Px1D");
}
if (EAMIsInit(&aForceGray))
input << QString("+ForceGray=") + QString(((string)(ToString(aForceGray))).c_str());
if (EAMIsInit(&aPrefix2Add))
input << QString("+Pref2Add=") + QString(aPrefix2Add.c_str());
char **output;
// Copy input to output
output = new char*[input.size() + 1];
for (int i = 0; i < input.size(); i++) {
output[i] = new char[strlen(input.at(i).toStdString().c_str())+1];
memcpy(output[i], input.at(i).toStdString().c_str(), strlen(input.at(i).toStdString().c_str())+1);
}
output[input.size()] = ((char*)NULL);
cResultSubstAndStdGetFile<cParamSaisiePts> aP2(
input.size()-2,output+2,
output[1],
StdGetFileXMLSpec("ParamSaisiePts.xml"),
"ParamSaisiePts",
"ParamSaisiePts",
"DirectoryChantier",
"FileChantierNameDescripteur" );
cAppli_SaisiePts anAppli (aP2,false);
SaisieQtWindow w(POINT2D_INIT);
new cQT_Interface(anAppli,&w);
w.show();
w.addFiles(filenames, false);
return app.exec();
}
else
return EXIT_SUCCESS;
}
int menu(void)
{
char Choice;
do {
ProjectTitle();
Message("\n"
"P. Planar embedding and Kuratowski subgraph isolation\n"
"D. Planar graph drawing\n"
"O. Outerplanar embedding and obstruction isolation\n"
"2. Search for subgraph homeomorphic to K_{2,3}\n"
"3. Search for subgraph homeomorphic to K_{3,3}\n"
"4. Search for subgraph homeomorphic to K_4\n"
"C. Color the vertices of the graph\n"
"H. Help message for command line version\n"
"R. Reconfigure options\n"
"X. Exit\n"
"\n"
);
Prompt("Enter Choice: ");
fflush(stdin);
scanf(" %c", &Choice);
Choice = tolower(Choice);
if (Choice == 'h')
helpMessage(NULL);
else if (Choice == 'r')
Reconfigure();
else if (Choice != 'x')
{
char *secondOutfile = NULL;
if (Choice == 'p' || Choice == 'o' || Choice == 'd')
secondOutfile ="";
switch (tolower(Mode))
{
case 's' : SpecificGraph(Choice, NULL, NULL, secondOutfile); break;
case 'r' : RandomGraphs(Choice, 0, 0); break;
case 'm' : RandomGraph(Choice, 0, 0, NULL, NULL); break;
case 'n' : RandomGraph(Choice, 1, 0, NULL, NULL); break;
}
}
if (Choice != 'r' && Choice != 'x')
{
Prompt("\nPress a key then hit ENTER to continue...");
fflush(stdin);
scanf(" %*c");
fflush(stdin);
Message("\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n");
FlushConsole(stdout);
}
} while (Choice != 'x');
// Certain debuggers don't terminate correctly with pending output content
FlushConsole(stdout);
FlushConsole(stderr);
return 0;
}
/*!
* \brief Executes a command from telnet interface
*/
void TelnetSocket::execute(const QString &command)
{
QString arguments;
Console::Command cmd = parseCommand(command, arguments);
switch (cmd)
{
case Console::Empty:
show(QString());
break;
case Console::Help:
show(helpMessage(arguments == QLatin1String("0")));
break;
case Console::Quit:
show(quitMessage(), false);
disconnectFromHost();
break;
case Console::Kill:
show(quitMessage(), false);
disconnectFromHost();
Console::execute(Console::Kill);
break;
case Console::Download:
{
QVariantList arg;
arg.append(QVariant::fromValue(arguments));
arg.append(QVariant::fromValue(true));
if (Console::execute(Console::Download, arg))
show(color(tr("Link '%1' added").arg(arguments), Cyan));
else
show(color(tr("Failed to add link '%1'").arg(arguments), Red));
}
break;
case Console::StartTask:
case Console::PauseTask:
case Console::StopTask:
case Console::DeleteTask:
{
QVariantList arg;
arg.append(QVariant::fromValue(arguments.toInt()));
if (Console::execute(cmd, arg))
show(color(tr("Done"), Cyan));
else
show(color(tr("Invalid task ID : '%1'").arg(arguments.toInt()), Red));
}
break;
case Console::GetProperty:
{
QVariantList arg;
QVariant result;
arg.append(QVariant::fromValue(arguments));
if (Console::execute(cmd, arg, &result))
show(color(tr("%1 : %2").arg(arguments).arg(result.toString()), Cyan));
else
show(color(tr("Invalid property : '%1'").arg(arguments), Red));
}
break;
case Console::SetProperty:
{
QVariantList arg;
arg.append(QVariant::fromValue(arguments.section(QLatin1Char(' '), 0, 0)));
arg.append(QVariant::fromValue(arguments.section(QLatin1Char(' '), 1, 1).toInt()));
if (Console::execute(cmd, arg))
show(color(tr("Done"), Cyan));
else
show(color(tr("Invalid property : '%1'").arg(arguments), Red));
}
break;
case Console::Status:
{
/// \todo ugly here
QStringList title;
QList<QStringList> list;
title.append(tr("ID"));
title.append(tr("State"));
title.append(tr("File"));
title.append(tr("%"));
title.append(tr("Size"));
title.append(tr("DownloadTime"));
const TaskManager::Tasks &tasks = TaskManager::getInstance()->getTasks();
for (auto iter = tasks.constBegin(); iter != tasks.constEnd(); ++iter)
{
QStringList item;
item.append(QString::number(iter.key()));
item.append(iter.value()->getStateString());
item.append(iter.value()->getName());
item.append(Utility::HumanReadable::formatPercent(iter.value()->getProgress()));
item.append(Utility::HumanReadable::formatByte(iter.value()->getSize()));
item.append(QString::number(iter.value()->getTransferTime()));
list.append(item);
}
// get the max width for each column
QList<int> width;
foreach (const QString &columnName, title)
width.append(columnName.size());
foreach (const QStringList &item, list)
for (int i = 0; i < item.size(); ++i)
width[i] = qMax(width[i], item[i].size());
// padding
for (int i = 0; i < width.size(); ++i) width[i] += 3;
QString result;
// title
for (int i = 0; i < title.size(); ++i)
result.append(title[i].rightJustified(width[i]));
result = color(result, Cyan);
result.append(QLatin1Char('\n'));
// items
foreach (const QStringList &item, list)
{
for (int i = 0; i < item.size(); ++i)
result.append(item[i].rightJustified(width[i]));
result.append(QLatin1Char('\n'));
}
// global statistics
result.append(tr("Download Rate : %1/s Upload Rate : %2/s")
.arg(Utility::HumanReadable::formatByte(Network::TrafficManager::getInstance()->getDownloadRate()))
.arg(Utility::HumanReadable::formatByte(Network::TrafficManager::getInstance()->getUploadRate())));
show(result);
}
break;
default:
show(color(tr("Invalid command '%1'\n\n").arg(command), Red) + helpMessage(true));
break;
}
}
void interpretCommandLineParameters(int argc, const char* argv[],
int* stateCount,
int* ntaxa,
int* nsites,
bool* manualScaling,
bool* autoScaling,
bool* dynamicScaling,
int* rateCategoryCount,
int* rsrc,
int* nreps,
bool* fullTiming,
bool* requireDoublePrecision,
bool* requireSSE,
int* compactTipCount,
int* randomSeed,
int* rescaleFrequency,
bool* unrooted,
bool* calcderivs,
bool* logscalers,
int* eigenCount,
bool* eigencomplex,
bool* ievectrans,
bool* setmatrix) {
bool expecting_stateCount = false;
bool expecting_ntaxa = false;
bool expecting_nsites = false;
bool expecting_rateCategoryCount = false;
bool expecting_nreps = false;
bool expecting_rsrc = false;
bool expecting_compactTipCount = false;
bool expecting_seed = false;
bool expecting_rescaleFrequency = false;
bool expecting_eigenCount = false;
for (unsigned i = 1; i < argc; ++i) {
std::string option = argv[i];
if (expecting_stateCount) {
*stateCount = (unsigned)atoi(option.c_str());
expecting_stateCount = false;
} else if (expecting_ntaxa) {
*ntaxa = (unsigned)atoi(option.c_str());
expecting_ntaxa = false;
} else if (expecting_nsites) {
*nsites = (unsigned)atoi(option.c_str());
expecting_nsites = false;
} else if (expecting_rateCategoryCount) {
*rateCategoryCount = (unsigned)atoi(option.c_str());
expecting_rateCategoryCount = false;
} else if (expecting_rsrc) {
*rsrc = (unsigned)atoi(option.c_str());
expecting_rsrc = false;
} else if (expecting_nreps) {
*nreps = (unsigned)atoi(option.c_str());
expecting_nreps = false;
} else if (expecting_compactTipCount) {
*compactTipCount = (unsigned)atoi(option.c_str());
expecting_compactTipCount = false;
} else if (expecting_seed) {
*randomSeed = (unsigned)atoi(option.c_str());
expecting_seed = false;
} else if (expecting_rescaleFrequency) {
*rescaleFrequency = (unsigned)atoi(option.c_str());
expecting_rescaleFrequency = false;
} else if (expecting_eigenCount) {
*eigenCount = (unsigned)atoi(option.c_str());
expecting_eigenCount = false;
} else if (option == "--help") {
helpMessage();
} else if (option == "--manualscale") {
*manualScaling = true;
} else if (option == "--autoscale") {
*autoScaling = true;
} else if (option == "--dynamicscale") {
*dynamicScaling = true;
} else if (option == "--doubleprecision") {
*requireDoublePrecision = true;
} else if (option == "--states") {
expecting_stateCount = true;
} else if (option == "--taxa") {
expecting_ntaxa = true;
} else if (option == "--sites") {
expecting_nsites = true;
} else if (option == "--rates") {
expecting_rateCategoryCount = true;
} else if (option == "--rsrc") {
expecting_rsrc = true;
} else if (option == "--reps") {
expecting_nreps = true;
} else if (option == "--compact-tips") {
expecting_compactTipCount = true;
} else if (option == "--rescale-frequency") {
expecting_rescaleFrequency = true;
} else if (option == "--seed") {
expecting_seed = true;
} else if (option == "--full-timing") {
*fullTiming = true;
} else if (option == "--SSE") {
*requireSSE = true;
} else if (option == "--unrooted") {
*unrooted = true;
} else if (option == "--calcderivs") {
*calcderivs = true;
} else if (option == "--logscalers") {
*logscalers = true;
} else if (option == "--eigencount") {
expecting_eigenCount = true;
} else if (option == "--eigencomplex") {
*eigencomplex = true;
} else if (option == "--ievectrans") {
*ievectrans = true;
} else if (option == "--setmatrix") {
*setmatrix = true;
} else {
std::string msg("Unknown command line parameter \"");
msg.append(option);
abort(msg.c_str());
}
}
if (expecting_stateCount)
abort("read last command line option without finding value associated with --states");
if (expecting_ntaxa)
abort("read last command line option without finding value associated with --taxa");
if (expecting_nsites)
abort("read last command line option without finding value associated with --sites");
if (expecting_rateCategoryCount)
abort("read last command line option without finding value associated with --rates");
if (expecting_rsrc)
abort("read last command line option without finding value associated with --rsrc");
if (expecting_nreps)
abort("read last command line option without finding value associated with --reps");
if (expecting_seed)
abort("read last command line option without finding value associated with --seed");
if (expecting_rescaleFrequency)
abort("read last command line option without finding value associated with --rescale-frequency");
if (expecting_compactTipCount)
abort("read last command line option without finding value associated with --compact-tips");
if (expecting_eigenCount)
abort("read last command line option without finding value associated with --eigencount");
if (*stateCount < 2)
abort("invalid number of states supplied on the command line");
if (*ntaxa < 2)
abort("invalid number of taxa supplied on the command line");
if (*nsites < 1)
abort("invalid number of sites supplied on the command line");
if (*rateCategoryCount < 1)
abort("invalid number of rates supplied on the command line");
if (*nreps < 1)
abort("invalid number of reps supplied on the command line");
if (*randomSeed < 1)
abort("invalid number for seed supplied on the command line");
if (*manualScaling && *rescaleFrequency < 1)
abort("invalid number for rescale-frequency supplied on the command line");
if (*compactTipCount < 0 || *compactTipCount > *ntaxa)
abort("invalid number for compact-tips supplied on the command line");
if (*calcderivs && !(*unrooted))
abort("calcderivs option requires unrooted tree option");
if (*eigenCount < 1)
abort("invalid number for eigencount supplied on the command line");
if (*eigencomplex && (*stateCount != 4 || *eigenCount != 1))
abort("eigencomplex option only works with stateCount=4 and eigenCount=1");
}
int WINAPI WinMain(HINSTANCE hinstance, HINSTANCE hPrevInstance,LPSTR lpCmdLine, int nCmdShow)
{
Win32CommandLineConverter cmd_line;
int argc = cmd_line.argc();
char **argv = cmd_line.argv();
#else
int main(int argc, char *argv[])
{
#endif
MMD_InitArgcArgv( argc, argv );
initQtLibraryPath();
QApplication app(argc, argv);
//app.setStyle("fusion");
// QT Modifie le comportement de sscanf !!!!! problematique quand on parse les fichiers XML
setlocale(LC_NUMERIC,"C");
app.setOrganizationName("Culture3D");
app.setApplicationName("QT graphical tools");
setStyleSheet(app);
QString cmds = QObject::tr("Allowed commands:") + "\n\n" +
QString("SaisieMasqQT\n") +
QString("SaisieAppuisInitQT\n") +
QString("SaisieAppuisPredicQT\n")+
QString("SaisieBascQT\n")+
QString("SaisieBoxQT\n\n");
if (argc > 1)
{
for (int i=0; i < argc; ++i)
{
QString str(argv[i]);
#ifdef _DEBUG
cout << "\ncommand: " << str.toStdString().c_str()<<endl;
#endif
if (!str.contains("SaisieQT"))
{
if (str.contains("SaisieMasqQT"))
saisieMasqQT_main(app, argc, argv);
else if (str.contains("SaisieAppuisInitQT"))
saisieAppuisInitQT_main(app, argc, argv);
else if (str.contains("SaisieAppuisPredicQT"))
saisieAppuisPredicQT_main(app, argc, argv);
else if (str.contains("SaisieBoxQT"))
saisieBoxQT_main(app, argc, argv);
else if (str.contains("SaisieBascQT"))
saisieBascQT_main(app, argc, argv);
else
{
QString text = str + QObject::tr(" is not a valid command!!!") + "\n\n" + cmds;
helpMessage(app, text);
return EXIT_FAILURE;
}
return EXIT_SUCCESS;
}
}
}
else
helpMessage(app, cmds);
return EXIT_SUCCESS;
}
void interpretCommandLineParameters(int argc, const char* argv[],
int* stateCount,
int* ntaxa,
int* nsites,
bool* manualScaling,
bool* autoScaling,
bool* dynamicScaling,
int* rateCategoryCount,
std::vector<int>* rsrc,
int* nreps,
bool* fullTiming,
bool* requireDoublePrecision,
bool* requireSSE,
bool* requireAVX,
int* compactTipCount,
int* randomSeed,
int* rescaleFrequency,
bool* unrooted,
bool* calcderivs,
bool* logscalers,
int* eigenCount,
bool* eigencomplex,
bool* ievectrans,
bool* setmatrix,
bool* opencl) {
bool expecting_stateCount = false;
bool expecting_ntaxa = false;
bool expecting_nsites = false;
bool expecting_rateCategoryCount = false;
bool expecting_nreps = false;
bool expecting_rsrc = false;
bool expecting_compactTipCount = false;
bool expecting_seed = false;
bool expecting_rescaleFrequency = false;
bool expecting_eigenCount = false;
for (unsigned i = 1; i < argc; ++i) {
std::string option = argv[i];
if (expecting_stateCount) {
*stateCount = (unsigned)atoi(option.c_str());
expecting_stateCount = false;
} else if (expecting_ntaxa) {
*ntaxa = (unsigned)atoi(option.c_str());
expecting_ntaxa = false;
} else if (expecting_nsites) {
*nsites = (unsigned)atoi(option.c_str());
expecting_nsites = false;
} else if (expecting_rateCategoryCount) {
*rateCategoryCount = (unsigned)atoi(option.c_str());
expecting_rateCategoryCount = false;
} else if (expecting_rsrc) {
std::stringstream ss(option);
int j;
while (ss >> j) {
rsrc->push_back(j);
if (ss.peek() == ',')
ss.ignore();
}
expecting_rsrc = false;
} else if (expecting_nreps) {
*nreps = (unsigned)atoi(option.c_str());
expecting_nreps = false;
} else if (expecting_compactTipCount) {
*compactTipCount = (unsigned)atoi(option.c_str());
expecting_compactTipCount = false;
} else if (expecting_seed) {
*randomSeed = (unsigned)atoi(option.c_str());
expecting_seed = false;
} else if (expecting_rescaleFrequency) {
*rescaleFrequency = (unsigned)atoi(option.c_str());
expecting_rescaleFrequency = false;
} else if (expecting_eigenCount) {
*eigenCount = (unsigned)atoi(option.c_str());
expecting_eigenCount = false;
} else if (option == "--help") {
helpMessage();
} else if (option == "--resourcelist") {
printResourceList();
} else if (option == "--manualscale") {
*manualScaling = true;
} else if (option == "--autoscale") {
*autoScaling = true;
} else if (option == "--dynamicscale") {
*dynamicScaling = true;
} else if (option == "--doubleprecision") {
*requireDoublePrecision = true;
} else if (option == "--states") {
expecting_stateCount = true;
} else if (option == "--taxa") {
expecting_ntaxa = true;
} else if (option == "--sites") {
expecting_nsites = true;
} else if (option == "--rates") {
expecting_rateCategoryCount = true;
} else if (option == "--rsrc") {
expecting_rsrc = true;
} else if (option == "--reps") {
expecting_nreps = true;
} else if (option == "--compact-tips") {
expecting_compactTipCount = true;
} else if (option == "--rescale-frequency") {
expecting_rescaleFrequency = true;
} else if (option == "--seed") {
expecting_seed = true;
} else if (option == "--full-timing") {
*fullTiming = true;
} else if (option == "--SSE") {
*requireSSE = true;
} else if (option == "--AVX") {
*requireAVX = true;
} else if (option == "--unrooted") {
*unrooted = true;
} else if (option == "--calcderivs") {
*calcderivs = true;
} else if (option == "--logscalers") {
*logscalers = true;
} else if (option == "--eigencount") {
expecting_eigenCount = true;
} else if (option == "--eigencomplex") {
*eigencomplex = true;
} else if (option == "--ievectrans") {
*ievectrans = true;
} else if (option == "--setmatrix") {
*setmatrix = true;
} else if (option == "--opencl") {
*opencl = true;
} else {
std::string msg("Unknown command line parameter \"");
msg.append(option);
abort(msg.c_str());
}
}
