void imProcessFillHoles(const imImage* image, imImage* NewImage, int connect)
{
// finding regions in the inverted image will isolate only the holes.
imProcessNegative(image, NewImage);
imImage *region_image = imImageCreate(image->width, image->height, IM_GRAY, IM_USHORT);
if (!region_image)
return;
int holes_count = imAnalyzeFindRegions(NewImage, region_image, connect, 0);
if (!holes_count)
{
imImageCopy(image, NewImage);
imImageDestroy(region_image);
return;
}
imushort* region_data = (imushort*)region_image->data[0];
imbyte* dst_data = (imbyte*)NewImage->data[0];
for (int i = 0; i < image->count; i++)
{
if (*region_data)
*dst_data = 1;
else
*dst_data = !(*dst_data); // Fix negative data.
region_data++;
dst_data++;
}
imImageDestroy(region_image);
}
int imProcessBrinkThreshold(const imImage* image, imImage* dest, bool white_is_255 )
{
imImage *src = imImageDuplicate( image );
if ( !white_is_255 )
imProcessNegative( src, src );
int i, j;
int Topt = 0;
double p[MAX_GRAY]; // pmf (i.e. normalized histogram)
unsigned long histo[MAX_GRAY]; // from imlib: "Histogram is always 256 positions long"
double m_f[MAX_GRAY]; // first foreground moment
double m_b[MAX_GRAY]; // first background moment
double tmp0[MAX_GRAY][MAX_GRAY];
double tmp1[MAX_GRAY][MAX_GRAY];
double tmp3[MAX_GRAY][MAX_GRAY];
double tmp4[MAX_GRAY][MAX_GRAY];
double tmpVec1[MAX_GRAY];
double tmpVec2[MAX_GRAY];
imCalcGrayHistogram(src, histo, NON_CUMULATIVE); // gray histogram computed
double invHistSum = 1.0 / vecSum(histo, MAX_GRAY); // inverse of the sum
for (i = 0; i < MAX_GRAY; ++i)
p[i] = histo[i] * invHistSum; // equivalent to dividing by the sum, but faster!
m_f[0] = 0.0;
for (i = 1; i < MAX_GRAY; ++i) // m_f = cumsum(g .* p).';
m_f[i] = i * p[i] + m_f[i - 1];
memcpy(m_b, m_f, VEC_DBL_SZ); // m_b = m_f(end) - m_f;
for (i = 0; i < MAX_GRAY; ++i)
m_b[i] = m_f[MAX_GRAY - 1] - m_b[i];
/****************** END OF BINAR_ASHLEY PORTION, START OF ENTROPY_BRINK********************************/
for (i = 0; i < MAX_GRAY; ++i) // tmp0 = m_f_rep ./ g_rep;
{
for (j = 0; j < MAX_GRAY; ++j)
{
tmp0[i][j] = m_f[j] / i;
if ((m_f[j] == 0) || (i == 0))
{
tmp1[i][j] = 0.0; // replace inf or NaN values with 0
tmp3[i][j] = 0.0;
}
else
{
tmp1[i][j] = log(tmp0[i][j]);
tmp3[i][j] = log(1.0 / tmp0[i][j]);;
}
tmp4[i][j] = p[i] * (m_f[j] * tmp1[i][j] + i * tmp3[i][j]);
}
}
diagCumSum(tmpVec1, tmp4); // tmpVec is now the diagonal of the cumulative sum of tmp4
// same operation but for background moment, NOTE: tmp1 through tmp4 get overwritten
for (i = 0; i < MAX_GRAY; ++i)
{
for (j = 0; j < MAX_GRAY; ++j)
{
tmp0[i][j] = m_b[j] / i; // tmpb0 = m_b_rep ./ g_rep;
if ((m_b[j] == 0) || (i == 0))
{
tmp1[i][j] = 0.0; // replace inf or NaN values with 0
tmp3[i][j] = 0.0;
}
else
{
tmp1[i][j] = log(tmp0[i][j]);
tmp3[i][j] = log(1.0 / tmp0[i][j]);;
}
tmp4[i][j] = p[i] * (m_b[j] * tmp1[i][j] + i * tmp3[i][j]);
}
}
sumMinusDiagCumSum(tmpVec2, tmp4); // sum columns, subtract diagonal of cumsum of tmp4
for (i = 0; i < MAX_GRAY; ++i)
tmpVec1[i] += tmpVec2[i];
Topt = calcTopt(m_f, m_b, tmpVec1); // DO I NEED TO ADD ONE?
imProcessThreshold(src, dest, Topt, true);
imProcessBitwiseNot(dest, dest); // HACK ALERT: HAVE TO FLIP BITS
return Topt;
}