void GFont::renderCharVertexArray(RenderDevice* renderDevice, const Array<CPUCharVertex>& cpuCharArray, Array<int>& indexArray) const {
// Avoid the overhead of Profiler events by not calling LAUNCH_SHADER...
static const shared_ptr<Shader> fontShader = Shader::getShaderFromPattern("GFont_render.*");
renderDevice->setBlendFunc(RenderDevice::BLEND_SRC_ALPHA, RenderDevice::BLEND_ONE_MINUS_SRC_ALPHA);
renderDevice->setCullFace(CullFace::NONE);
const shared_ptr<VertexBuffer>& vb = VertexBuffer::create((cpuCharArray.size() * sizeof(CPUCharVertex)) + (indexArray.size() * sizeof(int)) + 8, VertexBuffer::WRITE_EVERY_FRAME);
IndexStream indexStream(indexArray, vb);
AttributeArray interleavedArray(cpuCharArray.size() * sizeof(CPUCharVertex), vb);
CPUCharVertex dummy;
# define OFFSET(field) ((size_t)(&dummy.field) - (size_t)&dummy)
AttributeArray texCoordArray (dummy.texCoord, cpuCharArray.size(), interleavedArray, OFFSET(texCoord), sizeof(CPUCharVertex));
AttributeArray positionArray (dummy.position, cpuCharArray.size(), interleavedArray, OFFSET(position), sizeof(CPUCharVertex));
AttributeArray colorArray (dummy.color, cpuCharArray.size(), interleavedArray, OFFSET(color), sizeof(CPUCharVertex));
AttributeArray borderColorArray(dummy.borderColor, cpuCharArray.size(), interleavedArray, OFFSET(borderColor), sizeof(CPUCharVertex));
# undef OFFSET
CPUCharVertex* dst = (CPUCharVertex*)interleavedArray.mapBuffer(GL_WRITE_ONLY);
System::memcpy(dst, cpuCharArray.getCArray(), cpuCharArray.size() * sizeof(CPUCharVertex));
interleavedArray.unmapBuffer();
Args args;
args.enableG3DArgs(false); // Lower CPU overhead for uniform bind
args.setAttributeArray("g3d_Vertex", positionArray);
args.setAttributeArray("g3d_TexCoord0", texCoordArray);
args.setAttributeArray("borderColor", borderColorArray);
args.setAttributeArray("color", colorArray);
args.setIndexArray(indexStream);
args.setPrimitiveType(PrimitiveType::TRIANGLES);
args.setUniform("g3d_ObjectToScreenMatrixTranspose", RenderDevice::current->objectToScreenMatrix().transpose());
args.setUniform("textureMatrix", Matrix4(m_textureMatrix));
args.setUniform("borderWidth", Vector2(m_textureMatrix[0], m_textureMatrix[5]));
args.setUniform("textureLODBias", -0.6f);
args.setUniform("fontTexture", m_texture, Sampler::defaults());
args.setUniform("alphaThreshold", 1.0f / 255.0f);
args.setUniform("translation", Vector2(0, 0));
RenderDevice::current->apply(fontShader, args);
}
int main(int ac, char* av[]){
// Yeah, I know this isn't the best way to do this, but YAY STREAMS
std::cout << "The ASCII Project Server - 0.0.1f" << std::endl;
std::cout << "--------------------------------" << std::endl;
std::cout << std::endl;
ConfigParser *cfgParse = new ConfigParser(ac, av);
cfgParse->parse();
dbEngine = new DBConnector(cfgParse->db_hostname, cfgParse->db_port, cfgParse->db_username, cfgParse->db_pass, cfgParse->db_name);
if(!fileExists("data/maps/World.idx")){
worldMap = new WorldMap(cfgParse->worldX, cfgParse->worldY, cfgParse->worldZ);
worldMap->initWorldMap();
worldMap->backupToDisk();
std::ofstream indexOutStream("data/maps/World.idx");
boost::archive::binary_oarchive indexOut(indexOutStream);
indexOut << worldMap;
indexOutStream.close();
}
else{
std::ifstream indexStream("data/maps/World.idx");
boost::archive::binary_iarchive indexLoad(indexStream);
indexLoad >> worldMap;
worldMap->loadFromDisk();
}
try
{
std::cout << "Preparing to start listening on port " << cfgParse->serverPort;
sleep(0.5);
std::cout << ".";
sleep(0.5);
std::cout << ".";
sleep(0.5);
std::cout << "." << std::endl;
boost::asio::io_service io_service;
tcp::endpoint endpoint(tcp::v4(), cfgParse->serverPort);
boost::asio::signal_set signals(io_service, SIGINT, SIGTERM);
signals.async_wait(boost::bind(&boost::asio::io_service::stop, &io_service));
game_server server(io_service, endpoint);
std::cout << "Server startup complete, have fun!" << std::endl;
std::cout << std::endl;
io_service.run();
}
catch (std::exception& e)
{
std::cerr << e.what() << std::endl;
}
return 0;
}
/*!
Parses and loads multi definitions
*/
void cMultiCache::load( const QString &basePath )
{
QFile indexFile( basePath + "multi.idx" );
if( !indexFile.open( IO_ReadOnly ) )
throw wpException( QString( "Error opening file %1 for reading." ).arg( basePath + "multi.idx" ) );
QDataStream indexStream( &indexFile );
indexStream.setByteOrder( QDataStream::LittleEndian );
QFile multiFile( basePath + "multi.mul" );
if ( !multiFile.open( IO_ReadOnly ) )
throw wpException( QString( "Error opening file %1 for reading." ).arg( basePath + "multi.mul" ) );
struct
{
Q_INT32 start;
Q_INT32 length;
Q_INT32 unknown;
} indexData;
ushort currentID = 0;
while ( !indexStream.atEnd() )
{
indexFile.at( currentID * 12 );
indexStream >> indexData.start;
indexStream >> indexData.length;
indexStream >> indexData.unknown;
if ( indexData.start == -1 ) // empty record?
{
++currentID;
continue;
}
QValueVector<multiItem_st> items;
items.reserve( indexData.length / 12 );
uint i = 0;
multiFile.at( indexData.start );
QDataStream multiStream( &multiFile );
multiStream.setByteOrder( QDataStream::LittleEndian );
for (; i < indexData.length / 12; ++i )
{
multiItem_st item;
multiStream >> item.tile;
multiStream >> item.x;
multiStream >> item.y;
multiStream >> item.z;
Q_UINT8 empty;
multiStream >> empty; // ????
Q_UINT32 isVisible = 0;
multiStream >> isVisible;
item.visible = isVisible > 0 ? true : false;
if ( item.visible ) // we ignore invisible items (?)
items.push_back(item);
}
MultiDefinition* multi = new MultiDefinition;
multi->setItems( items );
multis.insert( currentID++, multi );
}
}
int rapMapMap(int argc, char* argv[]) {
std::cerr << "RapMap Mapper\n";
std::string versionString = rapmap::version;
TCLAP::CmdLine cmd(
"RapMap Mapper",
' ',
versionString);
cmd.getProgramName() = "rapmap";
TCLAP::ValueArg<std::string> index("i", "index", "The location of the pseudoindex", true, "", "path");
TCLAP::ValueArg<std::string> read1("1", "leftMates", "The location of the left paired-end reads", false, "", "path");
TCLAP::ValueArg<std::string> read2("2", "rightMates", "The location of the right paired-end reads", false, "", "path");
TCLAP::ValueArg<std::string> unmatedReads("r", "unmatedReads", "The location of single-end reads", false, "", "path");
TCLAP::ValueArg<uint32_t> numThreads("t", "numThreads", "Number of threads to use", false, 1, "positive integer");
TCLAP::ValueArg<uint32_t> maxNumHits("m", "maxNumHits", "Reads mapping to more than this many loci are discarded", false, 200, "positive integer");
TCLAP::ValueArg<std::string> outname("o", "output", "The output file (default: stdout)", false, "", "path");
TCLAP::SwitchArg endCollectorSwitch("e", "endCollector", "Use the simpler (and faster) \"end\" collector as opposed to the more sophisticated \"skipping\" collector", false);
TCLAP::SwitchArg noout("n", "noOutput", "Don't write out any alignments (for speed testing purposes)", false);
cmd.add(index);
cmd.add(noout);
cmd.add(read1);
cmd.add(read2);
cmd.add(unmatedReads);
cmd.add(outname);
cmd.add(numThreads);
cmd.add(maxNumHits);
cmd.add(endCollectorSwitch);
auto consoleSink = std::make_shared<spdlog::sinks::stderr_sink_mt>();
auto consoleLog = spdlog::create("stderrLog", {consoleSink});
try {
cmd.parse(argc, argv);
bool pairedEnd = (read1.isSet() or read2.isSet());
if (pairedEnd and (read1.isSet() != read2.isSet())) {
consoleLog->error("You must set both the -1 and -2 arguments to align "
"paired end reads!");
std::exit(1);
}
if (pairedEnd and unmatedReads.isSet()) {
consoleLog->error("You cannot specify both paired-end and unmated "
"reads in the input!");
std::exit(1);
}
if (!pairedEnd and !unmatedReads.isSet()) {
consoleLog->error("You must specify input; either both paired-end "
"or unmated reads!");
std::exit(1);
}
std::string indexPrefix(index.getValue());
if (indexPrefix.back() != '/') {
indexPrefix += "/";
}
if (!rapmap::fs::DirExists(indexPrefix.c_str())) {
consoleLog->error("It looks like the index you provided [{}] "
"doesn't exist", indexPrefix);
std::exit(1);
}
IndexHeader h;
std::ifstream indexStream(indexPrefix + "header.json");
{
cereal::JSONInputArchive ar(indexStream);
ar(h);
}
indexStream.close();
if (h.indexType() != IndexType::PSEUDO) {
consoleLog->error("The index {} does not appear to be of the "
"appropriate type (pseudo)", indexPrefix);
std::exit(1);
}
RapMapIndex rmi;
rmi.load(indexPrefix);
std::cerr << "\n\n\n\n";
// from: http://stackoverflow.com/questions/366955/obtain-a-stdostream-either-from-stdcout-or-stdofstreamfile
// set either a file or cout as the output stream
std::streambuf* outBuf;
std::ofstream outFile;
bool haveOutputFile{false};
if (outname.getValue() == "") {
outBuf = std::cout.rdbuf();
} else {
outFile.open(outname.getValue());
outBuf = outFile.rdbuf();
haveOutputFile = true;
}
// Now set the output stream to the buffer, which is
// either std::cout, or a file.
std::ostream outStream(outBuf);
// Must be a power of 2
size_t queueSize{268435456};
spdlog::set_async_mode(queueSize);
auto outputSink = std::make_shared<spdlog::sinks::ostream_sink_mt>(outStream);
auto outLog = std::make_shared<spdlog::logger>("outLog", outputSink);
outLog->set_pattern("%v");
uint32_t nthread = numThreads.getValue();
std::unique_ptr<paired_parser> pairParserPtr{nullptr};
std::unique_ptr<single_parser> singleParserPtr{nullptr};
if (!noout.getValue()) {
rapmap::utils::writeSAMHeader(rmi, outLog);
}
SpinLockT iomutex;
{
ScopedTimer timer;
HitCounters hctrs;
consoleLog->info("mapping reads . . . \n\n\n");
if (pairedEnd) {
std::vector<std::thread> threads;
std::vector<std::string> read1Vec = rapmap::utils::tokenize(read1.getValue(), ',');
std::vector<std::string> read2Vec = rapmap::utils::tokenize(read2.getValue(), ',');
if (read1Vec.size() != read2Vec.size()) {
consoleLog->error("The number of provided files for "
"-1 and -2 must be the same!");
std::exit(1);
}
size_t numFiles = read1Vec.size() + read2Vec.size();
char** pairFileList = new char*[numFiles];
for (size_t i = 0; i < read1Vec.size(); ++i) {
pairFileList[2*i] = const_cast<char*>(read1Vec[i].c_str());
pairFileList[2*i+1] = const_cast<char*>(read2Vec[i].c_str());
}
size_t maxReadGroup{1000}; // Number of reads in each "job"
size_t concurrentFile{2}; // Number of files to read simultaneously
pairParserPtr.reset(new paired_parser(4 * nthread, maxReadGroup,
concurrentFile,
pairFileList, pairFileList+numFiles));
/** Create the threads depending on the collector type **/
if (endCollectorSwitch.getValue()) {
EndCollector endCollector(&rmi);
for (size_t i = 0; i < nthread; ++i) {
threads.emplace_back(processReadsPair<EndCollector, SpinLockT>,
pairParserPtr.get(),
std::ref(rmi),
std::ref(endCollector),
&iomutex,
outLog,
std::ref(hctrs),
maxNumHits.getValue(),
noout.getValue());
}
} else {
SkippingCollector skippingCollector(&rmi);
for (size_t i = 0; i < nthread; ++i) {
threads.emplace_back(processReadsPair<SkippingCollector, SpinLockT>,
pairParserPtr.get(),
std::ref(rmi),
std::ref(skippingCollector),
&iomutex,
outLog,
std::ref(hctrs),
maxNumHits.getValue(),
noout.getValue());
}
}
for (auto& t : threads) { t.join(); }
delete [] pairFileList;
} else {
std::vector<std::thread> threads;
std::vector<std::string> unmatedReadVec = rapmap::utils::tokenize(unmatedReads.getValue(), ',');
size_t maxReadGroup{1000}; // Number of reads in each "job"
size_t concurrentFile{1};
stream_manager streams( unmatedReadVec.begin(), unmatedReadVec.end(),
concurrentFile);
singleParserPtr.reset(new single_parser(4 * nthread,
maxReadGroup,
concurrentFile,
streams));
/** Create the threads depending on the collector type **/
if (endCollectorSwitch.getValue()) {
EndCollector endCollector(&rmi);
for (size_t i = 0; i < nthread; ++i) {
threads.emplace_back(processReadsSingle<EndCollector, SpinLockT>,
singleParserPtr.get(),
std::ref(rmi),
std::ref(endCollector),
&iomutex,
outLog,
std::ref(hctrs),
maxNumHits.getValue(),
noout.getValue());
}
} else {
SkippingCollector skippingCollector(&rmi);
for (size_t i = 0; i < nthread; ++i) {
threads.emplace_back(processReadsSingle<SkippingCollector, SpinLockT>,
singleParserPtr.get(),
std::ref(rmi),
std::ref(skippingCollector),
&iomutex,
outLog,
std::ref(hctrs),
maxNumHits.getValue(),
noout.getValue());
}
}
for (auto& t : threads) { t.join(); }
}
consoleLog->info("Done mapping reads.");
consoleLog->info("In total saw {} reads.", hctrs.numReads);
consoleLog->info("Final # hits per read = {}", hctrs.totHits / static_cast<float>(hctrs.numReads));
consoleLog->info("Discarded {} reads because they had > {} alignments",
hctrs.tooManyHits, maxNumHits.getValue());
consoleLog->info("flushing output");
outLog->flush();
}
if (haveOutputFile) {
outFile.close();
}
return 0;
} catch (TCLAP::ArgException& e) {
consoleLog->error("Exception [{}] when parsing argument {}", e.error(), e.argId());
return 1;
}
}
