void LSH_DFE::fit(){
srand(0);
init_data_structure();
prepare();
lsh_main_function();
release();
}
void Forwarder::read_seq_directory(const std::string &dirname, const size_t alphabet_size, std::vector<size_t> &nStatesSave, const size_t min_no_eval) {
std::vector<std::vector<unsigned> > sequences;
DIR *dir;
struct dirent *ent;
std::string suffix = ".seq";
if ((dir = opendir (dirname.c_str())) != NULL) {
while ((ent = readdir (dir)) != NULL) {
std::string filename = ent->d_name;
if(filename.size() >= suffix.size() && filename.compare(filename.size() - suffix.size(), suffix.size(), suffix) == 0) {
std::string path = dirname + "/" + filename;
std::vector<unsigned> sequence;
zipHMM::readSeq(sequence, path);
sequences.push_back(sequence);
}
}
closedir (dir);
} else {
/* could not open directory */
perror ("could not open directory");
}
init_data_structure(sequences, alphabet_size, nStatesSave, min_no_eval);
}
void Forwarder::read_seq(const std::string &seq_filename, const size_t alphabet_size, std::vector<size_t> &nStatesSave, const size_t min_no_eval) {
std::vector<std::vector<unsigned> > sequences;
sequences.push_back(std::vector<unsigned>());
readSeq(sequences[0], seq_filename);
init_data_structure(sequences, alphabet_size, nStatesSave, min_no_eval);
}