void mitk::PlanarFigureCompositeWriter::Write()
{
std::ostream* out;
std::ofstream outStream;
if( this->GetOutputStream() )
{
out = this->GetOutputStream();
}else{
outStream.open( this->GetOutputLocation().c_str() );
out = &outStream;
}
if ( !out->good() )
{
mitkThrow() << "Stream not good.";
}
try
{
const std::string& locale = "C";
const std::string& currLocale = setlocale( LC_ALL, NULL );
setlocale(LC_ALL, locale.c_str());
std::locale previousLocale(out->getloc());
std::locale I("C");
out->imbue(I);
std::string filename = this->GetOutputLocation().c_str();
mitk::PlanarFigureComposite::ConstPointer input = dynamic_cast<const mitk::PlanarFigureComposite*>(this->GetInput());
std::string ext = itksys::SystemTools::GetFilenameLastExtension(this->GetOutputLocation().c_str());
boost::property_tree::ptree type;
type.put("comptype", input->getOperationType());
boost::property_tree::xml_writer_settings<std::string> writerSettings(' ', 2);
boost::property_tree::xml_parser::write_xml(filename, type, std::locale(), writerSettings);
setlocale(LC_ALL, currLocale.c_str());
}
catch(...)
{
throw;
}
}
void mitk::ContourModelWriter::Write()
{
std::ostream* out;
std::ofstream outStream;
if( this->GetOutputStream() )
{
out = this->GetOutputStream();
}
else
{
outStream.open( this->GetOutputLocation().c_str() );
out = &outStream;
}
if ( !out->good() )
{
mitkThrow() << "Stream not good.";
}
std::locale previousLocale(out->getloc());
std::locale I("C");
out->imbue(I);
/*+++++++++++ Here the actual xml writing begins +++++++++*/
/*++++ <?xml version="1.0" encoding="utf-8"?> ++++*/
WriteXMLHeader( *out );
//
// for each input object write its xml representation to
// the stream
//
mitk::ContourModel::ConstPointer contourModel = dynamic_cast<const mitk::ContourModel*>(this->GetInput());
assert( contourModel.IsNotNull() );
WriteXML( contourModel.GetPointer(), *out );
out->imbue(previousLocale);
if ( !out->good() ) // some error during output
{
throw std::ios_base::failure("Some error during contour writing.");
}
}
void mitk::ConnectomicsNetworkCSVWriter::Write()
{
MITK_INFO << "Writing connectomics network";
InputType::ConstPointer input = dynamic_cast<const InputType*>(this->GetInput());
if (input.IsNull() )
{
MITK_ERROR <<"Sorry, input to ConnectomicsNetworkMatrixWriter is nullptr!";
return;
}
this->ValidateOutputLocation();
std::ostream* out;
std::ofstream outStream;
if( this->GetOutputStream() )
{
out = this->GetOutputStream();
}
else
{
outStream.open( this->GetOutputLocation().c_str() );
out = &outStream;
}
if ( !out->good() )
{
mitkThrow() << "Could not open stream.";
}
try
{
const std::string& locale = "C";
const std::string& currLocale = setlocale( LC_ALL, nullptr );
setlocale(LC_ALL, locale.c_str());
std::locale previousLocale(out->getloc());
std::locale I("C");
out->imbue(I);
// construct header
std::stringstream header;
mitk::StringProperty::Pointer addHeaderInfoProperty = dynamic_cast<mitk::StringProperty*>(input->GetProperty(connectomicsDataAdditionalHeaderInformation.c_str()).GetPointer());
if(addHeaderInfoProperty.IsNotNull())
{
std::string additionalHeaderInfo = addHeaderInfoProperty->GetValue();
// if the additional header info contains newlines we need to add #
// in front of the new lines
std::vector<std::string> strings;
boost::split(strings, additionalHeaderInfo, boost::is_any_of("\n"));
for( unsigned int index(0); index < strings.size(); ++index)
{
header << "#" << strings[index] << "\n";
}
}
// construct body
std::stringstream body;
std::vector< InputType::VertexDescriptorType > nodes = input->GetVectorOfAllVertexDescriptors();
for(unsigned int i(0); i < nodes.size(); ++i)
{
for(unsigned int j(0); j < i; ++j)
{
double weight(0);
if( input->EdgeExists(nodes[i], nodes[j]) )
{
weight = (input->GetEdge(nodes[i], nodes[j])).edge_weight;
}
body << (input->GetNode(nodes[i])).label << " "
<< (input->GetNode(nodes[j])).label << " "
<< weight << "\n";
}
}
(*out)<< header.str() << body.str();
setlocale(LC_ALL, currLocale.c_str());
MITK_INFO << "Connectomics network connection list written";
}
catch(...)
{
mitkThrow() << "Error while writing to stream.";
}
}
